Wall clock time and date at job start Tue Mar 31 2020 18:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47150 * 2 1 4 4 C 1.53006 * 109.47159 * 120.00034 * 2 1 3 5 5 N 1.46506 * 109.47045 * 295.00188 * 4 2 1 6 6 C 1.46498 * 119.99575 * 269.99872 * 5 4 2 7 7 C 1.34768 * 120.00174 * 89.99507 * 5 4 2 8 8 O 1.21726 * 120.00323 * 0.02562 * 7 5 4 9 9 C 1.46257 * 120.00330 * 180.27495 * 7 5 4 10 10 C 1.35015 * 120.00463 * 173.07287 * 9 7 5 11 11 C 1.46960 * 120.00140 * 348.88368 * 10 9 7 12 12 C 1.40025 * 120.09828 * 315.53942 * 11 10 9 13 13 C 1.37604 * 119.89648 * 179.72198 * 12 11 10 14 14 C 1.39171 * 120.10097 * 0.57069 * 13 12 11 15 15 O 1.35570 * 119.89945 * 179.70305 * 14 13 12 16 16 C 1.34784 * 116.99911 * 174.27793 * 15 14 13 17 17 H 1.08003 * 120.00118 * 5.07014 * 16 15 14 18 18 C 1.38719 * 120.00009 * 185.06167 * 16 15 14 19 19 N 1.31503 * 120.00188 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 119.99853 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47160 * 89.99712 * 20 18 16 22 22 H 1.48504 * 109.46949 * 210.00181 * 20 18 16 23 23 H 1.48506 * 109.46816 * 329.99879 * 20 18 16 24 24 C 1.39185 * 120.20325 * 359.68117 * 14 13 12 25 25 C 1.37596 * 120.09942 * 0.04062 * 24 14 13 26 26 C 1.50694 * 109.47142 * 239.99651 * 2 1 3 27 27 O 1.20829 * 120.00415 * 239.99906 * 26 2 1 28 28 O 1.34226 * 119.99769 * 60.00650 * 26 2 1 29 29 H 1.08994 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47341 * 300.00126 * 1 2 3 31 31 H 1.09002 * 109.46859 * 59.99766 * 1 2 3 32 32 H 1.08993 * 109.47200 * 174.99667 * 4 2 1 33 33 H 1.09005 * 109.46893 * 54.99306 * 4 2 1 34 34 H 1.09000 * 109.46869 * 269.99827 * 6 5 4 35 35 H 1.08995 * 109.47361 * 29.99882 * 6 5 4 36 36 H 1.08999 * 109.46774 * 150.00245 * 6 5 4 37 37 H 1.08002 * 119.99307 * 353.07575 * 9 7 5 38 38 H 1.08002 * 120.00334 * 168.87354 * 10 9 7 39 39 H 1.08002 * 120.05382 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.94828 * 180.27254 * 13 12 11 41 41 H 0.97006 * 119.99902 * 180.02562 * 19 18 16 42 42 H 1.07997 * 119.94579 * 180.02562 * 24 14 13 43 43 H 1.08007 * 120.05103 * 180.02562 * 25 24 14 44 44 H 0.96707 * 117.00045 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0353 2.4425 6 6 2.5427 1.0696 2.9751 7 6 0.4768 -0.2201 3.0499 8 8 -0.2629 -1.0797 2.6076 9 6 0.0870 0.5394 4.2376 10 6 -1.1466 0.3838 4.7638 11 6 -2.1765 -0.3521 4.0171 12 6 -2.3548 -0.1161 2.6484 13 6 -3.3165 -0.8116 1.9521 14 6 -4.1193 -1.7397 2.6085 15 8 -5.0696 -2.4182 1.9198 16 6 -5.7326 -3.3860 2.5835 17 1 -5.5555 -3.5360 3.6383 18 6 -6.6426 -4.1892 1.9119 19 7 -7.2891 -5.1338 2.5593 20 14 -6.9486 -3.9300 0.0874 21 1 -6.0068 -4.7688 -0.6966 22 1 -8.3449 -4.3153 -0.2400 23 1 -6.7373 -2.4997 -0.2516 24 6 -3.9492 -1.9738 3.9700 25 6 -2.9863 -1.2872 4.6732 26 6 2.0323 -0.7105 -1.2304 27 8 2.7270 -1.6928 -1.1195 28 8 1.7081 -0.2518 -2.4495 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1262 -0.7996 1.2056 33 1 1.6052 -1.7198 1.2952 34 1 3.2229 0.6246 3.7013 35 1 3.1179 1.5088 2.1602 36 1 1.9496 1.8448 3.4603 37 1 0.7862 1.2248 4.6936 38 1 -1.3765 0.7999 5.7335 39 1 -1.7357 0.6077 2.1392 40 1 -3.4518 -0.6334 0.8955 41 1 -7.9251 -5.6957 2.0895 42 1 -4.5742 -2.6952 4.4752 43 1 -2.8547 -1.4697 5.7296 44 1 2.0542 -0.7406 -3.2088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492983775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:06 Heat of formation + Delta-G solvation = -114.879004 kcal Electronic energy + Delta-G solvation = -28761.720966 eV Core-core repulsion = 24645.304432 eV Total energy + Delta-G solvation = -4116.416534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69720 -41.08582 -40.52291 -38.45133 -37.29270 -36.76274 -34.81971 -34.50869 -33.82657 -31.85398 -29.91618 -28.40748 -27.51426 -27.06766 -25.64643 -23.93754 -23.53541 -22.26496 -21.04545 -19.94812 -19.46845 -19.15888 -18.92584 -18.36472 -17.86125 -16.88591 -16.85265 -16.54890 -16.36278 -15.98544 -15.68902 -15.48667 -15.12686 -14.98404 -14.54560 -14.45208 -14.31621 -14.16732 -14.12359 -13.77531 -13.68104 -13.59767 -13.18645 -13.11051 -12.92690 -12.62306 -12.59031 -12.49155 -12.37127 -12.21499 -12.11004 -11.94798 -11.52415 -11.30979 -11.01425 -10.60630 -10.40012 -9.76517 -9.45633 -8.59255 -8.52419 -6.23137 -0.01130 0.70360 1.09294 1.12527 1.27444 1.33953 1.48772 1.82100 2.25806 2.36859 2.54555 2.79964 3.05984 3.24547 3.59858 3.70522 3.95217 4.00861 4.06890 4.12369 4.15547 4.36734 4.45012 4.49268 4.55511 4.58558 4.69463 4.75340 4.82481 4.86827 4.94409 4.97619 5.05017 5.21449 5.22592 5.29315 5.39345 5.46452 5.54506 5.60736 5.70642 5.79260 5.84213 5.91328 6.28132 6.52968 6.82018 6.92669 7.39456 7.58546 8.59352 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003540 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.374577 B = 7906.656730 C = 9864.605314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.142 0.858 4 C 0.134 3.866 5 N -0.612 5.612 6 C 0.068 3.932 7 C 0.525 3.475 8 O -0.555 6.555 9 C -0.228 4.228 10 C 0.002 3.998 11 C -0.149 4.149 12 C 0.012 3.988 13 C -0.205 4.205 14 C 0.131 3.869 15 O -0.245 6.245 16 C -0.400 4.400 17 H 0.081 0.919 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.262 1.262 23 H -0.263 1.263 24 C -0.253 4.253 25 C -0.054 4.054 26 C 0.492 3.508 27 O -0.550 6.550 28 O -0.510 6.510 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.175 0.825 38 H 0.166 0.834 39 H 0.132 0.868 40 H 0.117 0.883 41 H 0.285 0.715 42 H 0.106 0.894 43 H 0.140 0.860 44 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.817 19.807 -1.361 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 H 0.160 0.840 4 C 0.010 3.990 5 N -0.345 5.345 6 C -0.073 4.073 7 C 0.317 3.683 8 O -0.434 6.434 9 C -0.248 4.248 10 C -0.017 4.017 11 C -0.150 4.150 12 C -0.006 4.006 13 C -0.225 4.225 14 C 0.082 3.918 15 O -0.152 6.152 16 C -0.477 4.477 17 H 0.098 0.902 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.186 1.186 23 H -0.187 1.187 24 C -0.272 4.272 25 C -0.072 4.072 26 C 0.335 3.665 27 O -0.441 6.441 28 O -0.323 6.323 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.192 0.808 38 H 0.184 0.816 39 H 0.149 0.851 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.157 0.843 44 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 23.261 19.166 -1.471 30.175 hybrid contribution -0.378 -1.358 -1.046 1.755 sum 22.883 17.808 -2.516 29.105 Atomic orbital electron populations 1.21741 0.92101 1.01977 1.03204 1.21410 0.98182 1.02403 0.88937 0.84046 1.21099 1.00678 0.94579 0.82648 1.47846 1.20065 1.39050 1.27547 1.22167 0.94130 0.90273 1.00711 1.19115 0.80952 0.83777 0.84443 1.91017 1.51470 1.34838 1.66100 1.23159 0.98713 1.04442 0.98492 1.22588 0.90840 0.90728 0.97570 1.18933 1.00026 1.02058 0.93946 1.20797 0.91764 0.95566 0.92500 1.20229 1.00418 1.01767 1.00054 1.19772 0.88339 0.92115 0.91574 1.83447 1.45674 1.45750 1.40361 1.20749 1.21381 1.10234 0.95288 0.90171 1.25275 0.94973 0.94007 1.04467 1.69704 1.27331 1.20128 1.39073 0.85251 0.78183 0.79492 0.77969 1.19442 1.18649 1.18740 1.21098 1.04981 1.06782 0.94358 1.21132 0.92431 0.94081 0.99603 1.23532 0.75663 0.81685 0.85574 1.90728 1.37992 1.27524 1.87880 1.84495 1.71947 1.58920 1.16930 0.94618 0.91114 0.90775 0.88163 0.92634 0.91476 0.89233 0.88556 0.80767 0.81625 0.85086 0.86527 0.90507 0.87627 0.84257 0.71068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 7.87 71.98 0.57 -2.41 16 2 C -0.09 -1.54 3.03 -11.54 -0.04 -1.57 16 3 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.13 2.60 4.34 86.38 0.38 2.98 16 5 N -0.61 -10.01 2.76 -851.99 -2.35 -12.36 16 6 C 0.07 0.42 10.11 127.77 1.29 1.71 16 7 C 0.52 12.08 5.35 86.33 0.46 12.54 16 8 O -0.55 -18.67 10.09 -4.43 -0.04 -18.71 16 9 C -0.23 -3.79 9.03 23.61 0.21 -3.58 16 10 C 0.00 0.04 9.80 23.82 0.23 0.27 16 11 C -0.15 -4.77 4.51 -20.13 -0.09 -4.86 16 12 C 0.01 0.41 6.61 22.55 0.15 0.56 16 13 C -0.21 -8.81 9.97 22.34 0.22 -8.59 16 14 C 0.13 6.69 6.66 22.72 0.15 6.84 16 15 O -0.24 -14.25 8.57 -20.29 -0.17 -14.43 16 16 C -0.40 -24.88 9.94 67.93 0.68 -24.20 16 17 H 0.08 5.21 5.41 -2.91 -0.02 5.20 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.92 -56.93 13.96 21.62 0.30 -56.63 16 20 Si 0.97 47.58 28.62 68.60 1.96 49.55 16 21 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 24 C -0.25 -12.02 9.14 22.35 0.20 -11.82 16 25 C -0.05 -2.02 9.78 22.55 0.22 -1.80 16 26 C 0.49 9.76 7.63 71.23 0.54 10.31 16 27 O -0.55 -14.55 16.68 21.96 0.37 -14.18 16 28 O -0.51 -7.54 13.33 -51.38 -0.68 -8.22 16 29 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 30 H 0.07 1.62 4.18 -2.39 -0.01 1.61 16 31 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 32 H 0.10 1.60 7.88 -2.39 -0.02 1.58 16 33 H 0.06 1.56 7.42 -2.38 -0.02 1.54 16 34 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.09 0.23 8.07 -2.39 -0.02 0.21 16 36 H 0.10 0.25 6.18 -2.39 -0.01 0.23 16 37 H 0.18 1.25 6.33 -2.91 -0.02 1.23 16 38 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.13 3.80 5.22 -2.91 -0.02 3.78 16 40 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 41 H 0.29 16.10 8.31 -92.70 -0.77 15.33 16 42 H 0.11 5.47 5.62 -2.91 -0.02 5.45 16 43 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.43 2.91 9.10 -74.05 -0.67 2.24 16 Total: -1.00 -84.71 364.89 5.41 -79.31 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.38 Total: 18.15 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 5.65 Total: -22.47 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -2.05 Total: -68.99 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.54 Total: -55.54 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.96 Total: 49.55 kcal Total: -84.71 5.41 -79.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492983775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.573 kcal (2) G-P(sol) polarization free energy of solvation -84.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds