Wall clock time and date at job start Tue Mar 31 2020 16:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47522 * 2 1 4 4 N 1.46493 * 109.47494 * 180.02562 * 3 2 1 5 5 C 1.46503 * 119.99848 * 89.99628 * 4 3 2 6 6 C 1.50700 * 109.46979 * 90.00536 * 5 4 3 7 7 O 1.20820 * 119.99875 * 359.97438 * 6 5 4 8 8 O 1.34224 * 119.99999 * 180.02562 * 6 5 4 9 9 C 1.34774 * 120.00199 * 270.00487 * 4 3 2 10 10 O 1.21726 * 119.99716 * 359.97438 * 9 4 3 11 11 C 1.46251 * 120.00051 * 180.02562 * 9 4 3 12 12 C 1.35031 * 119.99694 * 173.21891 * 11 9 4 13 13 C 1.46956 * 120.00348 * 348.67733 * 12 11 9 14 14 C 1.40020 * 120.10108 * 316.40097 * 13 12 11 15 15 C 1.37600 * 119.89916 * 179.69457 * 14 13 12 16 16 C 1.39178 * 120.09802 * 0.59853 * 15 14 13 17 17 O 1.35572 * 119.89762 * 179.69947 * 16 15 14 18 18 C 1.34778 * 117.00018 * 174.33998 * 17 16 15 19 19 H 1.08003 * 120.00035 * 5.05034 * 18 17 16 20 20 C 1.38721 * 119.99969 * 185.06388 * 18 17 16 21 21 N 1.31513 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47238 * 89.99168 * 22 20 18 24 24 H 1.48508 * 109.46937 * 209.99407 * 22 20 18 25 25 H 1.48503 * 109.46982 * 329.99239 * 22 20 18 26 26 C 1.39170 * 120.20568 * 359.67302 * 16 15 14 27 27 C 1.37604 * 120.09800 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46785 * 299.99932 * 1 2 3 29 29 H 1.08998 * 109.47106 * 59.99700 * 1 2 3 30 30 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47444 * 239.99771 * 2 1 3 32 32 H 1.08998 * 109.47484 * 119.99620 * 2 1 3 33 33 H 1.08996 * 109.46926 * 59.99956 * 3 2 1 34 34 H 1.09004 * 109.46800 * 300.00034 * 3 2 1 35 35 H 1.09005 * 109.46921 * 210.00050 * 5 4 3 36 36 H 1.08999 * 109.47331 * 330.00047 * 5 4 3 37 37 H 0.96699 * 117.00397 * 179.97438 * 8 6 5 38 38 H 1.07991 * 120.00240 * 353.21463 * 11 9 4 39 39 H 1.07998 * 119.99488 * 168.67749 * 12 11 9 40 40 H 1.08008 * 120.05116 * 359.97438 * 14 13 12 41 41 H 1.07998 * 119.95181 * 180.27535 * 15 14 13 42 42 H 0.97002 * 119.99949 * 180.02562 * 21 20 18 43 43 H 1.07994 * 119.95433 * 179.97438 * 26 16 15 44 44 H 1.08007 * 120.04742 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.4426 -1.2697 6 6 4.4880 2.8635 -1.7046 7 8 4.0954 3.7817 -1.0246 8 8 5.1469 3.1089 -2.8480 9 6 4.1794 1.4422 1.1663 10 8 3.5712 1.4425 2.2207 11 6 5.6419 1.4428 1.1656 12 6 6.3175 1.5806 2.3266 13 6 5.6046 1.9767 3.5491 14 6 4.6530 3.0030 3.5058 15 6 3.9834 3.3662 4.6517 16 6 4.2597 2.7237 5.8550 17 8 3.6019 3.0890 6.9827 18 6 3.8277 2.3525 8.0886 19 1 4.5676 1.5659 8.0718 20 6 3.1097 2.6046 9.2485 21 7 2.2090 3.5626 9.2691 22 14 3.4222 1.5833 10.7810 23 1 4.4852 2.2252 11.5954 24 1 2.1732 1.4937 11.5793 25 1 3.8566 0.2191 10.3866 26 6 5.2087 1.7070 5.9040 27 6 5.8788 1.3328 4.7619 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1895 0.9287 -1.1398 36 1 3.6476 0.9289 -2.0291 37 1 5.2837 4.0362 -3.0856 38 1 6.1816 1.3329 0.2367 39 1 7.3818 1.3997 2.3567 40 1 4.4417 3.5056 2.5735 41 1 3.2461 4.1546 4.6184 42 1 1.7072 3.7392 10.0802 43 1 5.4202 1.2114 6.8399 44 1 6.6149 0.5434 4.8008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493557522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:43 Heat of formation + Delta-G solvation = -93.468450 kcal Electronic energy + Delta-G solvation = -28355.607385 eV Core-core repulsion = 24240.119282 eV Total energy + Delta-G solvation = -4115.488103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79991 -39.68967 -38.75473 -36.91870 -36.33142 -35.65587 -33.72209 -32.89503 -32.08256 -30.10030 -28.85554 -28.29713 -26.33648 -25.33278 -23.16024 -22.35759 -21.85996 -21.51390 -20.35684 -18.54875 -18.41811 -17.89862 -17.53300 -16.96487 -16.76633 -16.20505 -15.72219 -15.05447 -14.73280 -14.52340 -14.47187 -14.24189 -13.77553 -13.47438 -13.44444 -13.30893 -13.22860 -12.98410 -12.76037 -12.45050 -12.21610 -12.09994 -11.95707 -11.78435 -11.68093 -11.50681 -11.31028 -11.00085 -10.94200 -10.79167 -10.65577 -10.59703 -10.39540 -9.51866 -9.41364 -9.15091 -8.87637 -8.68879 -7.90152 -6.85708 -6.44377 -4.00041 1.19980 1.91260 2.35565 2.52712 2.71580 3.05108 3.14517 3.16151 3.20353 3.63584 3.98350 4.48905 4.60353 4.71098 4.75190 4.88182 4.93568 5.03864 5.12635 5.16157 5.21793 5.33842 5.37848 5.54534 5.59175 5.71371 5.73970 5.88172 5.91913 6.03216 6.12509 6.19678 6.24402 6.29109 6.39093 6.49070 6.61211 6.81727 7.05232 7.13827 7.30812 7.39650 7.48619 7.52233 7.61070 7.94213 8.02339 8.41228 9.01142 9.73377 10.73455 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002770 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.576657 B =10104.226242 C =10889.390129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.118 3.882 4 N -0.605 5.605 5 C 0.123 3.877 6 C 0.450 3.550 7 O -0.496 6.496 8 O -0.521 6.521 9 C 0.549 3.451 10 O -0.495 6.495 11 C -0.278 4.278 12 C 0.037 3.963 13 C -0.194 4.194 14 C 0.013 3.987 15 C -0.202 4.202 16 C 0.173 3.827 17 O -0.172 6.172 18 C -0.390 4.390 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.251 4.251 27 C -0.040 4.040 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.410 0.590 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 -6.401 -24.091 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.004 4.004 4 N -0.340 5.340 5 C -0.003 4.003 6 C 0.289 3.711 7 O -0.381 6.381 8 O -0.333 6.333 9 C 0.341 3.659 10 O -0.370 6.370 11 C -0.299 4.299 12 C 0.017 3.983 13 C -0.194 4.194 14 C -0.006 4.006 15 C -0.221 4.221 16 C 0.118 3.882 17 O -0.074 6.074 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.270 4.270 27 C -0.058 4.058 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.269 0.731 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.309 -6.255 -22.939 24.164 hybrid contribution 0.293 0.126 0.291 0.432 sum 4.602 -6.128 -22.648 23.909 Atomic orbital electron populations 1.21687 0.95122 1.01885 1.02045 1.21885 0.96224 0.97087 1.02483 1.21508 0.78495 0.96893 1.03507 1.47697 1.06585 1.75260 1.04446 1.20962 1.01077 0.89860 0.88444 1.24440 0.74488 0.93995 0.78159 1.90789 1.47249 1.46632 1.53452 1.84511 1.71080 1.36529 1.41188 1.18480 0.88617 0.76014 0.82783 1.91005 1.69896 1.47004 1.29051 1.22623 0.92892 1.15577 0.98805 1.22362 0.98153 0.86112 0.91652 1.18284 1.05003 1.03708 0.92452 1.20495 0.90904 0.93626 0.95552 1.20017 1.05664 1.05669 0.90772 1.19529 0.90053 0.91303 0.87336 1.83908 1.58313 1.50063 1.15154 1.21401 1.22501 1.15666 0.87026 0.88873 1.25332 0.95292 0.97195 0.98759 1.70029 1.21843 1.28778 1.28735 0.85697 0.78172 0.79473 0.80011 1.19839 1.20224 1.19120 1.20944 1.03186 1.03796 0.99109 1.20734 0.96919 0.96793 0.91352 0.92163 0.92861 0.92510 0.92227 0.91117 0.89180 0.91216 0.85796 0.86317 0.73095 0.86324 0.85975 0.87936 0.86821 0.91950 0.85630 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.14 -1.37 6.26 -26.73 -0.17 -1.53 16 3 C 0.12 1.34 5.41 -4.04 -0.02 1.32 16 4 N -0.61 -7.06 1.96 -176.76 -0.35 -7.40 16 5 C 0.12 0.91 5.75 -5.19 -0.03 0.89 16 6 C 0.45 4.10 8.40 36.01 0.30 4.41 16 7 O -0.50 -6.79 17.19 -18.75 -0.32 -7.11 16 8 O -0.52 -3.21 13.42 -39.24 -0.53 -3.74 16 9 C 0.55 8.36 6.64 -13.04 -0.09 8.27 16 10 O -0.50 -9.78 11.75 5.17 0.06 -9.72 16 11 C -0.28 -3.61 9.14 -37.50 -0.34 -3.95 16 12 C 0.04 0.53 9.80 -37.19 -0.36 0.16 16 13 C -0.19 -3.66 4.54 -105.03 -0.48 -4.14 16 14 C 0.01 0.27 6.59 -39.15 -0.26 0.01 16 15 C -0.20 -4.80 9.97 -39.47 -0.39 -5.19 16 16 C 0.17 4.47 6.66 -38.89 -0.26 4.21 16 17 O -0.17 -5.13 9.74 0.74 0.01 -5.12 16 18 C -0.39 -11.22 9.48 30.91 0.29 -10.93 16 19 H 0.09 2.48 5.18 -52.48 -0.27 2.21 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 22 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C -0.25 -5.80 9.14 -39.47 -0.36 -6.16 16 27 C -0.04 -0.78 9.78 -39.15 -0.38 -1.16 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.12 0.67 6.02 -51.93 -0.31 0.36 16 36 H 0.12 0.53 8.07 -51.93 -0.42 0.11 16 37 H 0.41 1.15 9.10 45.56 0.41 1.57 16 38 H 0.12 1.08 6.14 -52.49 -0.32 0.76 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.10 2.07 7.02 -52.48 -0.37 1.70 16 41 H 0.11 2.66 8.06 -52.49 -0.42 2.24 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.13 2.86 5.62 -52.49 -0.29 2.56 16 44 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -37.14 377.43 -6.88 -44.01 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.90 Total: 6.26 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.28 Total: -13.76 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.41 Total: -32.38 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.78 Total: -25.69 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.14 -6.88 -44.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493557522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.455 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds