Wall clock time and date at job start Tue Mar 31 2020 18:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99801 * 2 1 4 4 H 1.09002 * 109.47267 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47362 * 239.99845 * 3 2 1 6 6 O 1.42902 * 109.47044 * 119.99911 * 3 2 1 7 7 N 1.41599 * 113.99918 * 205.00282 * 6 3 2 8 8 C 1.34787 * 119.99921 * 179.97438 * 7 6 3 9 9 O 1.21721 * 119.99679 * 0.02562 * 8 7 6 10 10 C 1.46257 * 119.99948 * 179.97438 * 8 7 6 11 11 C 1.35020 * 119.99886 * 186.79296 * 10 8 7 12 12 C 1.46968 * 119.99901 * 11.46035 * 11 10 8 13 13 C 1.40024 * 120.08061 * 43.39408 * 12 11 10 14 14 C 1.37652 * 120.00021 * 179.97438 * 13 12 11 15 15 C 1.39052 * 120.16089 * 0.25923 * 14 13 12 16 16 O 1.35612 * 119.92089 * 179.74148 * 15 14 13 17 17 C 1.34757 * 116.99836 * 5.90225 * 16 15 14 18 18 H 1.07997 * 120.00655 * 5.34329 * 17 16 15 19 19 C 1.38712 * 119.99832 * 185.34804 * 17 16 15 20 20 N 1.31520 * 120.00195 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99936 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47109 * 59.99580 * 21 19 17 23 23 H 1.48503 * 109.46967 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46872 * 299.99618 * 21 19 17 25 25 C 1.39627 * 120.15967 * 359.48987 * 15 14 13 26 26 O 1.35950 * 120.00569 * 180.27985 * 25 15 14 27 27 C 1.42897 * 117.00291 * 180.22981 * 26 25 15 28 28 C 1.38079 * 119.99598 * 0.50443 * 25 15 14 29 29 H 1.07996 * 119.99812 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00041 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00523 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47133 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.46686 * 300.00083 * 5 3 2 34 34 H 1.09000 * 109.46835 * 60.00115 * 5 3 2 35 35 H 0.96998 * 120.00447 * 359.97438 * 7 6 3 36 36 H 1.08000 * 119.99846 * 6.79923 * 10 8 7 37 37 H 1.07997 * 120.00137 * 191.45880 * 11 10 8 38 38 H 1.08002 * 119.99866 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.91485 * 179.97438 * 14 13 12 40 40 H 0.96996 * 120.00365 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.47045 * 179.97438 * 27 26 25 42 42 H 1.08996 * 109.47111 * 299.99624 * 27 26 25 43 43 H 1.08994 * 109.47229 * 60.00030 * 27 26 25 44 44 H 1.07996 * 120.08299 * 179.72715 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 8 2.8850 1.3809 1.1668 7 7 3.1895 2.7030 1.5720 8 6 3.9568 2.9148 2.6597 9 8 4.3883 1.9693 3.2934 10 6 4.2717 4.2804 3.0779 11 6 5.1491 4.4937 4.0817 12 6 5.9740 3.3861 4.5844 13 6 6.5831 2.5010 3.6864 14 6 7.3558 1.4644 4.1590 15 6 7.5294 1.2900 5.5275 16 8 8.2874 0.2640 5.9879 17 6 8.9415 -0.4736 5.0692 18 1 8.9184 -0.1849 4.0288 19 6 9.6445 -1.6038 5.4598 20 7 9.6731 -1.9552 6.7269 21 14 10.5506 -2.6267 4.1862 22 1 11.5707 -1.7854 3.5103 23 1 11.2185 -3.7720 4.8552 24 1 9.5834 -3.1355 3.1808 25 6 6.9295 2.1717 6.4288 26 8 7.1059 2.0015 7.7660 27 6 6.4589 2.9378 8.6301 28 6 6.1531 3.2137 5.9620 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 3.4884 2.3300 -1.2489 33 1 3.6515 0.5577 -1.2491 34 1 2.3165 1.3285 -2.1392 35 1 2.8458 3.4564 1.0668 36 1 3.8023 5.1183 2.5838 37 1 5.2448 5.4782 4.5153 38 1 6.4472 2.6320 2.6230 39 1 7.8246 0.7823 3.4652 40 1 10.1649 -2.7453 7.0001 41 1 6.6808 2.6881 9.6677 42 1 6.8202 3.9428 8.4126 43 1 5.3816 2.8962 8.4693 44 1 5.6848 3.8939 6.6579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493621453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:18 Heat of formation + Delta-G solvation = -34.363674 kcal Electronic energy + Delta-G solvation = -28046.439685 eV Core-core repulsion = 23933.514557 eV Total energy + Delta-G solvation = -4112.925127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33883 -40.52661 -39.22495 -39.04001 -37.58178 -35.40198 -34.54998 -33.94448 -32.74156 -31.10847 -30.72500 -29.84364 -27.78975 -27.31354 -24.98269 -24.08012 -23.20004 -22.71138 -21.35043 -20.31201 -19.87509 -19.43081 -18.89129 -18.06215 -17.58558 -16.91894 -16.59553 -16.54387 -16.41547 -16.08345 -15.60088 -15.44592 -15.22624 -15.19057 -15.06984 -14.72352 -14.46639 -14.41506 -13.96331 -13.89989 -13.48636 -13.17380 -13.05918 -12.84900 -12.78582 -12.67752 -12.56622 -12.20613 -12.06573 -12.02415 -11.89336 -11.80747 -11.38911 -10.90262 -10.75971 -10.57538 -10.29291 -9.87374 -9.33405 -8.46686 -8.35693 -6.10636 -0.07648 0.64630 0.76587 1.09942 1.30804 1.44391 1.46023 1.48475 2.17101 2.43660 2.63344 2.85545 3.17824 3.44990 3.54747 3.74420 3.86235 3.92111 3.99560 4.11293 4.13698 4.25880 4.36759 4.37599 4.46612 4.57995 4.62996 4.71941 4.73031 4.75463 4.77158 4.95359 5.00329 5.08893 5.11771 5.16425 5.33657 5.50646 5.55970 5.59038 5.59723 5.79752 5.92671 5.96560 6.07612 6.51927 6.70782 6.96789 7.46635 7.81021 8.76711 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003443 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.359092 B = 8130.153154 C =10321.184420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.181 4.181 3 C 0.085 3.915 4 H 0.103 0.897 5 C -0.170 4.170 6 O -0.176 6.176 7 N -0.583 5.583 8 C 0.533 3.467 9 O -0.558 6.558 10 C -0.214 4.214 11 C 0.014 3.986 12 C -0.130 4.130 13 C -0.018 4.018 14 C -0.229 4.229 15 C 0.096 3.904 16 O -0.219 6.219 17 C -0.416 4.416 18 H 0.096 0.904 19 C -0.023 4.023 20 N -0.918 5.918 21 Si 1.020 2.980 22 H -0.254 1.254 23 H -0.266 1.266 24 H -0.262 1.262 25 C 0.025 3.975 26 O -0.348 6.348 27 C 0.021 3.979 28 C -0.131 4.131 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.424 0.576 36 H 0.190 0.810 37 H 0.185 0.815 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.525 17.423 -14.785 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.200 4.200 3 C 0.027 3.973 4 H 0.121 0.879 5 C -0.227 4.227 6 O -0.181 6.181 7 N -0.287 5.287 8 C 0.324 3.676 9 O -0.436 6.436 10 C -0.234 4.234 11 C -0.005 4.005 12 C -0.130 4.130 13 C -0.036 4.036 14 C -0.248 4.248 15 C 0.045 3.955 16 O -0.126 6.126 17 C -0.492 4.492 18 H 0.113 0.887 19 C -0.221 4.221 20 N -0.556 5.556 21 Si 0.838 3.162 22 H -0.178 1.178 23 H -0.190 1.190 24 H -0.186 1.186 25 C -0.020 4.020 26 O -0.264 6.264 27 C -0.073 4.073 28 C -0.150 4.150 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.268 0.732 36 H 0.207 0.793 37 H 0.202 0.798 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.925 16.190 -13.797 27.817 hybrid contribution 0.179 -0.921 -0.739 1.194 sum -17.746 15.270 -14.536 27.557 Atomic orbital electron populations 1.24195 0.94748 1.03894 0.95605 1.22703 0.96441 0.97057 1.03811 1.21867 0.92445 0.97808 0.85140 0.87881 1.22289 1.00330 1.02727 0.97378 1.90711 1.72457 1.07682 1.47249 1.47558 1.54213 0.97387 1.29515 1.19465 0.77620 0.91711 0.78774 1.91052 1.52284 1.45816 1.54451 1.22841 1.04935 0.93197 1.02447 1.22647 0.88819 0.97763 0.91313 1.18726 1.02924 0.99493 0.91906 1.20704 0.92585 0.91835 0.98520 1.20809 1.07630 1.03199 0.93185 1.19481 0.93681 0.89831 0.92468 1.83958 1.54613 1.37906 1.36076 1.21812 1.29115 1.07925 0.90375 0.88664 1.26647 0.98281 0.97338 0.99814 1.70196 1.41639 1.26120 1.17614 0.84657 0.78046 0.77172 0.76309 1.17759 1.19013 1.18615 1.18309 1.03404 0.97703 0.82568 1.86162 1.71463 1.54722 1.14022 1.23252 0.97444 0.92799 0.93798 1.21182 0.99828 0.97617 0.96362 0.86432 0.86431 0.87784 0.91233 0.93384 0.89133 0.73249 0.79255 0.79844 0.86695 0.86862 0.91778 0.87479 0.91009 0.92057 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 14.32 67.78 0.97 -0.89 16 2 C -0.18 -3.21 9.15 25.65 0.23 -2.97 16 3 C 0.08 1.46 3.22 29.85 0.10 1.56 16 4 H 0.10 1.12 7.58 -2.39 -0.02 1.11 16 5 C -0.17 -2.51 9.54 71.98 0.69 -1.82 16 6 O -0.18 -4.85 10.73 -21.45 -0.23 -5.08 16 7 N -0.58 -12.56 6.37 -176.67 -1.13 -13.69 16 8 C 0.53 14.96 6.91 86.33 0.60 15.56 16 9 O -0.56 -23.50 12.58 12.92 0.16 -23.34 16 10 C -0.21 -3.76 9.90 23.61 0.23 -3.52 16 11 C 0.01 0.28 9.80 23.82 0.23 0.52 16 12 C -0.13 -4.51 4.54 -20.13 -0.09 -4.60 16 13 C -0.02 -0.75 6.59 22.56 0.15 -0.60 16 14 C -0.23 -11.85 9.11 22.33 0.20 -11.65 16 15 C 0.10 5.56 6.67 22.80 0.15 5.71 16 16 O -0.22 -14.87 9.52 -6.51 -0.06 -14.93 16 17 C -0.42 -26.92 9.44 67.93 0.64 -26.28 16 18 H 0.10 5.74 5.28 -2.91 -0.02 5.73 16 19 C -0.02 -1.44 5.49 84.85 0.47 -0.98 16 20 N -0.92 -60.74 13.67 21.62 0.30 -60.44 16 21 Si 1.02 46.61 29.55 68.60 2.03 48.64 16 22 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 25 C 0.02 1.22 6.70 22.57 0.15 1.37 16 26 O -0.35 -16.86 10.28 -79.02 -0.81 -17.67 16 27 C 0.02 0.66 9.81 113.37 1.11 1.77 16 28 C -0.13 -4.90 8.77 22.66 0.20 -4.70 16 29 H 0.12 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.12 1.01 7.83 -2.91 -0.02 0.98 16 31 H 0.10 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 4.55 8.40 -92.71 -0.78 3.77 16 36 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.12 4.37 7.01 -2.91 -0.02 4.35 16 39 H 0.11 6.05 5.69 -2.91 -0.02 6.03 16 40 H 0.27 16.45 8.31 -92.71 -0.77 15.68 16 41 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 42 H 0.07 1.79 7.66 -2.39 -0.02 1.77 16 43 H 0.06 1.65 7.66 -2.39 -0.02 1.64 16 44 H 0.16 4.48 6.28 -2.91 -0.02 4.46 16 Total: -1.00 -98.78 380.50 6.54 -92.24 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.25 Total: 25.80 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 6.03 Total: -31.53 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -0.83 Total: -74.13 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -0.94 Total: -61.02 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -98.78 6.54 -92.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493621453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.874 kcal (2) G-P(sol) polarization free energy of solvation -98.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds