Wall clock time and date at job start Tue Mar 31 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 120.00144 * 2 1 4 4 H 1.08999 * 109.47594 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47202 * 119.99958 * 3 2 1 6 6 O 1.42901 * 109.47015 * 239.99651 * 3 2 1 7 7 N 1.41603 * 113.99906 * 154.99880 * 6 3 2 8 8 C 1.34779 * 119.99776 * 180.02562 * 7 6 3 9 9 O 1.21722 * 120.00094 * 0.02562 * 8 7 6 10 10 C 1.46253 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.35035 * 119.99776 * 180.02562 * 10 8 7 12 12 C 1.46963 * 119.99832 * 180.02562 * 11 10 8 13 13 C 1.40025 * 120.08280 * 359.97438 * 12 11 10 14 14 C 1.37645 * 120.00280 * 179.97438 * 13 12 11 15 15 C 1.39056 * 120.15966 * 359.97438 * 14 13 12 16 16 O 1.35619 * 119.92189 * 180.02562 * 15 14 13 17 17 C 1.34760 * 116.99758 * 354.37702 * 16 15 14 18 18 H 1.08008 * 120.00105 * 5.06936 * 17 16 15 19 19 C 1.38701 * 120.00139 * 185.06246 * 17 16 15 20 20 N 1.31523 * 120.00511 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99755 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46810 * 89.99991 * 21 19 17 23 23 H 1.48502 * 109.47003 * 209.99682 * 21 19 17 24 24 H 1.48493 * 109.47095 * 329.99650 * 21 19 17 25 25 C 1.39620 * 120.15842 * 359.97438 * 15 14 13 26 26 O 1.35963 * 119.99977 * 179.97438 * 25 15 14 27 27 C 1.42893 * 116.99796 * 179.97438 * 26 25 15 28 28 C 1.38078 * 119.99972 * 0.02686 * 25 15 14 29 29 H 1.07999 * 120.00240 * 180.02562 * 1 2 3 30 30 H 1.08008 * 119.99568 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99414 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47188 * 59.99824 * 5 3 2 33 33 H 1.09002 * 109.46904 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.46805 * 299.99316 * 5 3 2 35 35 H 0.96998 * 120.00107 * 0.02562 * 7 6 3 36 36 H 1.08002 * 120.00565 * 0.02562 * 10 8 7 37 37 H 1.08001 * 119.99661 * 359.97438 * 11 10 8 38 38 H 1.08003 * 119.99766 * 0.26160 * 13 12 11 39 39 H 1.07997 * 119.92052 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00066 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47293 * 179.97438 * 27 26 25 42 42 H 1.09005 * 109.47749 * 300.00536 * 27 26 25 43 43 H 1.09009 * 109.47262 * 60.00571 * 27 26 25 44 44 H 1.08002 * 120.07640 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2493 6 8 2.8851 1.3806 -1.1668 7 7 3.1897 2.7028 -1.5720 8 6 3.9571 2.9144 -2.6596 9 8 4.3879 1.9690 -3.2938 10 6 4.2721 4.2800 -3.0777 11 6 5.0405 4.4921 -4.1677 12 6 5.3575 5.8643 -4.5876 13 6 4.8632 6.9531 -3.8589 14 6 5.1616 8.2377 -4.2534 15 6 5.9541 8.4579 -5.3746 16 8 6.2455 9.7256 -5.7586 17 6 5.6428 10.7234 -5.0825 18 1 5.0272 10.4991 -4.2238 19 6 5.8130 12.0385 -5.4892 20 7 5.2245 13.0124 -4.8297 21 14 6.8773 12.4263 -6.9747 22 1 6.0388 12.4168 -8.2003 23 1 7.4925 13.7673 -6.8063 24 1 7.9464 11.4032 -7.0983 25 6 6.4513 7.3772 -6.1054 26 8 7.2254 7.5963 -7.2015 27 6 7.7002 6.4444 -7.9011 28 6 6.1560 6.0859 -5.7157 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 3.6514 0.5576 1.2493 33 1 3.4885 2.3299 1.2490 34 1 2.3164 1.3285 2.1392 35 1 2.8461 3.4562 -1.0668 36 1 3.8902 5.1189 -2.5148 37 1 5.4227 3.6532 -4.7304 38 1 4.2517 6.7849 -2.9848 39 1 4.7801 9.0764 -3.6902 40 1 5.3439 13.9320 -5.1140 41 1 8.3032 6.7594 -8.7527 42 1 8.3076 5.8365 -7.2304 43 1 6.8517 5.8583 -8.2543 44 1 6.5397 5.2490 -6.2803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493621457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:22 Heat of formation + Delta-G solvation = -24.924320 kcal Electronic energy + Delta-G solvation = -26741.853479 eV Core-core repulsion = 22629.337672 eV Total energy + Delta-G solvation = -4112.515806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.94224 -39.49941 -38.09167 -37.89243 -36.70096 -34.71804 -33.16557 -32.50636 -31.84283 -30.12909 -29.85374 -28.76916 -26.72675 -25.54467 -23.98601 -23.26933 -21.95481 -21.27255 -20.49663 -19.34785 -18.32149 -18.18069 -17.92640 -17.05307 -16.30075 -15.93741 -15.57396 -15.38740 -15.22857 -14.70413 -14.61729 -14.51029 -14.05649 -13.98220 -13.85260 -13.80320 -13.59182 -13.29151 -12.65534 -12.56307 -12.36228 -12.24839 -12.00196 -11.97839 -11.64213 -11.39104 -11.36550 -11.14000 -11.01629 -10.91283 -10.77485 -10.32724 -10.11047 -9.90674 -9.63700 -9.52761 -9.02274 -8.90077 -8.12415 -7.10094 -6.61683 -4.21317 0.87032 1.43093 1.97141 2.10187 2.40436 3.14974 3.19549 3.36726 3.46408 3.76046 4.12601 4.15412 4.33413 4.33830 4.46741 4.53251 4.68784 4.76810 4.89310 4.92410 5.08762 5.23842 5.28003 5.28097 5.40829 5.41220 5.43415 5.47104 5.59597 5.69265 5.69780 5.83595 6.02598 6.06301 6.13945 6.23738 6.33065 6.42802 6.68316 6.72756 6.86058 7.09823 7.27206 7.30047 7.46306 7.75247 7.95287 8.30018 8.71793 9.33387 10.43854 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002014 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.062696 B =13897.916728 C =15160.026481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C 0.086 3.914 4 H 0.078 0.922 5 C -0.174 4.174 6 O -0.137 6.137 7 N -0.600 5.600 8 C 0.568 3.432 9 O -0.539 6.539 10 C -0.266 4.266 11 C 0.041 3.959 12 C -0.158 4.158 13 C -0.061 4.061 14 C -0.210 4.210 15 C 0.156 3.844 16 O -0.188 6.188 17 C -0.388 4.388 18 H 0.111 0.889 19 C 0.067 3.933 20 N -0.864 5.864 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.254 1.254 25 C 0.052 3.948 26 O -0.309 6.309 27 C 0.029 3.971 28 C -0.134 4.134 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.284 0.716 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -18.356 7.476 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.028 3.972 4 H 0.096 0.904 5 C -0.231 4.231 6 O -0.141 6.141 7 N -0.302 5.302 8 C 0.361 3.639 9 O -0.417 6.417 10 C -0.287 4.287 11 C 0.021 3.979 12 C -0.159 4.159 13 C -0.080 4.080 14 C -0.230 4.230 15 C 0.101 3.899 16 O -0.090 6.090 17 C -0.462 4.462 18 H 0.129 0.871 19 C -0.139 4.139 20 N -0.500 5.500 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.177 1.177 25 C 0.007 3.993 26 O -0.223 6.223 27 C -0.067 4.067 28 C -0.154 4.154 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.162 0.838 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.569 -18.631 6.691 20.316 hybrid contribution -0.100 0.406 0.145 0.442 sum -4.670 -18.225 6.835 20.017 Atomic orbital electron populations 1.23981 0.95489 1.02600 0.98167 1.22630 0.95571 0.97244 1.01450 1.21651 0.92345 0.97060 0.86153 0.90413 1.22311 1.00485 1.03341 0.96996 1.90644 1.71501 1.06478 1.45493 1.47548 1.55033 0.97190 1.30423 1.18422 0.77051 0.90217 0.78253 1.90808 1.52783 1.44115 1.53973 1.22178 1.09890 0.93326 1.03342 1.22233 0.88573 0.95414 0.91706 1.18192 1.06514 0.91735 0.99494 1.20986 0.97521 0.91431 0.98027 1.20971 1.04947 0.97827 0.99239 1.18633 0.94503 0.84009 0.92763 1.83589 1.59617 1.11078 1.54727 1.20910 1.28954 0.84223 1.12142 0.87140 1.24528 0.96811 0.93899 0.98641 1.69621 1.40588 1.00402 1.39360 0.86161 0.81250 0.78136 0.81473 1.19608 1.20597 1.17738 1.18035 0.99349 0.91515 0.90427 1.86179 1.64707 1.32610 1.38799 1.22944 0.98730 0.88684 0.96305 1.20898 1.01658 0.94324 0.98497 0.87397 0.88220 0.86224 0.91307 0.91756 0.91130 0.75371 0.85258 0.85582 0.86266 0.83838 0.90615 0.88926 0.93219 0.93208 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 14.32 29.01 0.42 -0.57 16 2 C -0.15 -1.11 9.15 -36.03 -0.33 -1.44 16 3 C 0.09 0.70 3.22 -27.89 -0.09 0.61 16 4 H 0.08 0.51 7.58 -51.93 -0.39 0.11 16 5 C -0.17 -1.19 9.54 37.16 0.35 -0.84 16 6 O -0.14 -1.70 10.73 -29.60 -0.32 -2.02 16 7 N -0.60 -6.88 6.37 30.16 0.19 -6.69 16 8 C 0.57 8.21 7.88 -13.04 -0.10 8.11 16 9 O -0.54 -10.04 16.64 -12.96 -0.22 -10.26 16 10 C -0.27 -3.40 9.41 -37.50 -0.35 -3.76 16 11 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 12 C -0.16 -2.52 5.87 -105.04 -0.62 -3.13 16 13 C -0.06 -1.00 9.40 -39.13 -0.37 -1.37 16 14 C -0.21 -4.15 9.14 -39.49 -0.36 -4.52 16 15 C 0.16 3.46 6.67 -38.76 -0.26 3.20 16 16 O -0.19 -4.79 8.35 -13.96 -0.12 -4.91 16 17 C -0.39 -10.33 9.94 30.90 0.31 -10.02 16 18 H 0.11 2.94 5.42 -52.48 -0.28 2.65 16 19 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 20 N -0.86 -23.63 13.96 55.48 0.77 -22.85 16 21 Si 0.91 20.98 28.62 -169.99 -4.86 16.12 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.05 1.01 6.70 -39.12 -0.26 0.75 16 26 O -0.31 -5.92 10.28 -34.24 -0.35 -6.27 16 27 C 0.03 0.38 9.81 101.05 0.99 1.37 16 28 C -0.13 -2.22 8.77 -38.99 -0.34 -2.56 16 29 H 0.11 0.50 8.06 -52.49 -0.42 0.07 16 30 H 0.10 0.51 7.83 -52.48 -0.41 0.10 16 31 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.41 3.12 8.40 -40.82 -0.34 2.78 16 36 H 0.13 1.34 6.06 -52.49 -0.32 1.03 16 37 H 0.13 1.76 7.52 -52.49 -0.39 1.37 16 38 H 0.12 1.57 6.15 -52.48 -0.32 1.25 16 39 H 0.14 2.90 5.62 -52.49 -0.29 2.61 16 40 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 43 H 0.05 0.58 7.66 -51.92 -0.40 0.18 16 44 H 0.13 1.72 6.28 -52.49 -0.33 1.39 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -32.85 384.22 -6.13 -38.98 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.56 Total: 4.35 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.46 Total: -12.24 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.97 Total: -29.54 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.00 Total: -23.45 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.85 -6.13 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493621457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.057 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds