Wall clock time and date at job start Tue Mar 31 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 120.00144 * 2 1 4 4 H 1.08999 * 109.47594 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47202 * 119.99958 * 3 2 1 6 6 O 1.42901 * 109.47015 * 239.99651 * 3 2 1 7 7 N 1.41603 * 113.99906 * 154.99880 * 6 3 2 8 8 C 1.34779 * 119.99776 * 180.02562 * 7 6 3 9 9 O 1.21722 * 120.00094 * 0.02562 * 8 7 6 10 10 C 1.46253 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.35035 * 119.99776 * 180.02562 * 10 8 7 12 12 C 1.46963 * 119.99832 * 180.02562 * 11 10 8 13 13 C 1.40025 * 120.08280 * 359.97438 * 12 11 10 14 14 C 1.37645 * 120.00280 * 179.97438 * 13 12 11 15 15 C 1.39056 * 120.15966 * 359.97438 * 14 13 12 16 16 O 1.35619 * 119.92189 * 180.02562 * 15 14 13 17 17 C 1.34760 * 116.99758 * 354.37702 * 16 15 14 18 18 H 1.08008 * 120.00105 * 5.06936 * 17 16 15 19 19 C 1.38701 * 120.00139 * 185.06246 * 17 16 15 20 20 N 1.31523 * 120.00511 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99755 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46810 * 89.99991 * 21 19 17 23 23 H 1.48502 * 109.47003 * 209.99682 * 21 19 17 24 24 H 1.48493 * 109.47095 * 329.99650 * 21 19 17 25 25 C 1.39620 * 120.15842 * 359.97438 * 15 14 13 26 26 O 1.35963 * 119.99977 * 179.97438 * 25 15 14 27 27 C 1.42893 * 116.99796 * 179.97438 * 26 25 15 28 28 C 1.38078 * 119.99972 * 0.02686 * 25 15 14 29 29 H 1.07999 * 120.00240 * 180.02562 * 1 2 3 30 30 H 1.08008 * 119.99568 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99414 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47188 * 59.99824 * 5 3 2 33 33 H 1.09002 * 109.46904 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.46805 * 299.99316 * 5 3 2 35 35 H 0.96998 * 120.00107 * 0.02562 * 7 6 3 36 36 H 1.08002 * 120.00565 * 0.02562 * 10 8 7 37 37 H 1.08001 * 119.99661 * 359.97438 * 11 10 8 38 38 H 1.08003 * 119.99766 * 0.26160 * 13 12 11 39 39 H 1.07997 * 119.92052 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00066 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47293 * 179.97438 * 27 26 25 42 42 H 1.09005 * 109.47749 * 300.00536 * 27 26 25 43 43 H 1.09009 * 109.47262 * 60.00571 * 27 26 25 44 44 H 1.08002 * 120.07640 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2493 6 8 2.8851 1.3806 -1.1668 7 7 3.1897 2.7028 -1.5720 8 6 3.9571 2.9144 -2.6596 9 8 4.3879 1.9690 -3.2938 10 6 4.2721 4.2800 -3.0777 11 6 5.0405 4.4921 -4.1677 12 6 5.3575 5.8643 -4.5876 13 6 4.8632 6.9531 -3.8589 14 6 5.1616 8.2377 -4.2534 15 6 5.9541 8.4579 -5.3746 16 8 6.2455 9.7256 -5.7586 17 6 5.6428 10.7234 -5.0825 18 1 5.0272 10.4991 -4.2238 19 6 5.8130 12.0385 -5.4892 20 7 5.2245 13.0124 -4.8297 21 14 6.8773 12.4263 -6.9747 22 1 6.0388 12.4168 -8.2003 23 1 7.4925 13.7673 -6.8063 24 1 7.9464 11.4032 -7.0983 25 6 6.4513 7.3772 -6.1054 26 8 7.2254 7.5963 -7.2015 27 6 7.7002 6.4444 -7.9011 28 6 6.1560 6.0859 -5.7157 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 3.6514 0.5576 1.2493 33 1 3.4885 2.3299 1.2490 34 1 2.3164 1.3285 2.1392 35 1 2.8461 3.4562 -1.0668 36 1 3.8902 5.1189 -2.5148 37 1 5.4227 3.6532 -4.7304 38 1 4.2517 6.7849 -2.9848 39 1 4.7801 9.0764 -3.6902 40 1 5.3439 13.9320 -5.1140 41 1 8.3032 6.7594 -8.7527 42 1 8.3076 5.8365 -7.2304 43 1 6.8517 5.8583 -8.2543 44 1 6.5397 5.2490 -6.2803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493621457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:22 Heat of formation + Delta-G solvation = -45.302007 kcal Electronic energy + Delta-G solvation = -26742.737121 eV Core-core repulsion = 22629.337672 eV Total energy + Delta-G solvation = -4113.399449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40993 -40.60556 -39.42391 -38.98149 -38.10231 -35.45154 -34.68465 -34.14360 -32.83068 -31.30457 -30.75414 -30.06578 -27.90313 -27.27379 -25.04040 -24.14786 -23.36993 -22.51905 -21.29728 -20.34610 -19.90359 -19.54694 -19.13810 -18.25059 -17.64519 -17.11914 -16.72234 -16.65594 -16.28842 -16.16862 -15.61832 -15.54822 -15.42008 -15.40733 -15.21206 -14.90927 -14.54518 -14.36843 -14.23584 -13.87054 -13.39580 -13.31046 -13.16544 -12.96822 -12.83891 -12.74558 -12.55945 -12.15405 -12.10337 -12.08274 -12.05217 -11.93466 -11.42358 -11.13865 -11.06256 -10.62887 -10.56706 -9.96109 -9.50097 -8.60918 -8.52086 -6.18935 -0.38332 0.51271 0.69509 1.04837 1.31773 1.35820 1.42747 1.53839 2.27268 2.28495 2.49863 2.79207 2.95285 3.10866 3.41800 3.66435 3.74357 3.89798 3.93011 4.08981 4.10731 4.15920 4.31497 4.36700 4.40169 4.45677 4.49768 4.53356 4.73669 4.75059 4.76019 4.89359 4.97273 5.03568 5.12772 5.17685 5.33926 5.46003 5.58188 5.58987 5.59903 5.72347 5.77841 5.82436 6.01425 6.34568 6.55650 6.82400 7.25879 7.57379 8.58223 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002014 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.062696 B =13897.916728 C =15160.026481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.175 4.175 3 C 0.081 3.919 4 H 0.098 0.902 5 C -0.171 4.171 6 O -0.165 6.165 7 N -0.583 5.583 8 C 0.563 3.437 9 O -0.584 6.584 10 C -0.226 4.226 11 C 0.022 3.978 12 C -0.122 4.122 13 C -0.067 4.067 14 C -0.209 4.209 15 C 0.109 3.891 16 O -0.229 6.229 17 C -0.397 4.397 18 H 0.094 0.906 19 C 0.017 3.983 20 N -0.913 5.913 21 Si 0.961 3.039 22 H -0.268 1.268 23 H -0.266 1.266 24 H -0.268 1.268 25 C 0.048 3.952 26 O -0.341 6.341 27 C 0.018 3.982 28 C -0.132 4.132 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.426 0.574 36 H 0.162 0.838 37 H 0.132 0.868 38 H 0.159 0.841 39 H 0.129 0.871 40 H 0.286 0.714 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -21.722 8.329 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.194 4.194 3 C 0.024 3.976 4 H 0.116 0.884 5 C -0.228 4.228 6 O -0.171 6.171 7 N -0.285 5.285 8 C 0.355 3.645 9 O -0.465 6.465 10 C -0.247 4.247 11 C 0.002 3.998 12 C -0.123 4.123 13 C -0.085 4.085 14 C -0.228 4.228 15 C 0.059 3.941 16 O -0.136 6.136 17 C -0.473 4.473 18 H 0.111 0.889 19 C -0.183 4.183 20 N -0.552 5.552 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.190 1.190 24 H -0.192 1.192 25 C 0.003 3.997 26 O -0.257 6.257 27 C -0.076 4.076 28 C -0.151 4.151 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.269 0.731 36 H 0.179 0.821 37 H 0.150 0.850 38 H 0.176 0.824 39 H 0.147 0.853 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.552 -22.052 7.587 23.972 hybrid contribution 0.014 0.703 0.098 0.710 sum -5.538 -21.349 7.685 23.356 Atomic orbital electron populations 1.24220 0.95017 1.03812 0.95695 1.22659 0.96163 0.96869 1.03692 1.21925 0.92465 0.98145 0.85061 0.88448 1.22294 1.00416 1.02885 0.97228 1.90646 1.72490 1.06584 1.47380 1.47331 1.53517 0.98078 1.29528 1.18651 0.77077 0.90195 0.78581 1.90802 1.54594 1.45519 1.55588 1.22473 1.06791 0.93580 1.01875 1.22146 0.90382 0.94227 0.93039 1.18505 1.03396 0.92570 0.97844 1.21320 0.97968 0.89870 0.99370 1.21072 1.04192 0.99103 0.98425 1.19279 0.96512 0.83863 0.94472 1.83556 1.62022 1.11847 1.56160 1.20829 1.29304 0.85154 1.12051 0.88902 1.25165 0.98232 0.93898 1.00996 1.69686 1.43429 1.00677 1.41444 0.85339 0.79449 0.77883 0.78873 1.19332 1.19031 1.19214 1.18255 0.99096 0.91774 0.90546 1.86144 1.64712 1.35935 1.38868 1.23327 0.99845 0.87629 0.96844 1.21302 1.01015 0.94009 0.98730 0.86099 0.87116 0.86731 0.92469 0.91625 0.89334 0.73060 0.82063 0.85015 0.82368 0.85288 0.90447 0.86964 0.91462 0.91474 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 14.32 67.78 0.97 -0.39 16 2 C -0.17 -2.21 9.15 25.64 0.23 -1.98 16 3 C 0.08 1.10 3.22 29.85 0.10 1.20 16 4 H 0.10 0.90 7.58 -2.39 -0.02 0.89 16 5 C -0.17 -1.92 9.54 71.98 0.69 -1.23 16 6 O -0.17 -3.71 10.73 -21.46 -0.23 -3.94 16 7 N -0.58 -11.27 6.37 -176.69 -1.13 -12.40 16 8 C 0.56 14.24 7.88 86.33 0.68 14.92 16 9 O -0.58 -20.34 16.64 12.91 0.21 -20.12 16 10 C -0.23 -4.69 9.41 23.62 0.22 -4.47 16 11 C 0.02 0.52 9.45 23.82 0.23 0.75 16 12 C -0.12 -3.45 5.87 -20.14 -0.12 -3.57 16 13 C -0.07 -2.02 9.40 22.56 0.21 -1.81 16 14 C -0.21 -8.31 9.14 22.33 0.20 -8.10 16 15 C 0.11 5.00 6.67 22.80 0.15 5.15 16 16 O -0.23 -12.39 8.35 -6.61 -0.06 -12.45 16 17 C -0.40 -22.61 9.94 67.93 0.68 -21.93 16 18 H 0.09 5.35 5.42 -2.91 -0.02 5.33 16 19 C 0.02 0.96 5.49 84.85 0.47 1.42 16 20 N -0.91 -52.75 13.96 21.62 0.30 -52.44 16 21 Si 0.96 45.48 28.62 68.60 1.96 47.44 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 25 C 0.05 1.87 6.70 22.57 0.15 2.03 16 26 O -0.34 -12.97 10.28 -79.16 -0.81 -13.78 16 27 C 0.02 0.42 9.81 113.37 1.11 1.54 16 28 C -0.13 -3.98 8.77 22.65 0.20 -3.78 16 29 H 0.12 0.76 8.06 -2.91 -0.02 0.74 16 30 H 0.11 0.74 7.83 -2.91 -0.02 0.72 16 31 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.43 4.63 8.40 -92.71 -0.78 3.85 16 36 H 0.16 2.31 6.06 -2.91 -0.02 2.30 16 37 H 0.13 3.14 7.52 -2.91 -0.02 3.12 16 38 H 0.16 3.42 6.15 -2.91 -0.02 3.40 16 39 H 0.13 5.48 5.62 -2.91 -0.02 5.47 16 40 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 42 H 0.07 1.35 7.66 -2.38 -0.02 1.33 16 43 H 0.07 1.35 7.66 -2.38 -0.02 1.33 16 44 H 0.16 3.70 6.28 -2.91 -0.02 3.68 16 Total: -1.00 -77.18 384.22 6.69 -70.49 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.26 Total: 17.46 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 6.17 Total: -20.26 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.82 Total: -64.84 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.88 Total: -50.29 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.96 Total: 47.44 kcal Total: -77.18 6.69 -70.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493621457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.188 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds