Wall clock time and date at job start Tue Mar 31 2020 16:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 N 1.46502 * 109.47087 * 120.00254 * 2 1 3 5 5 C 1.46493 * 120.00003 * 305.54018 * 4 2 1 6 6 C 1.50702 * 109.47476 * 270.00193 * 5 4 2 7 7 O 1.20833 * 119.99523 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00214 * 179.97438 * 6 5 4 9 9 C 1.34769 * 119.99561 * 125.54358 * 4 2 1 10 10 O 1.21724 * 119.99633 * 185.77959 * 9 4 2 11 11 C 1.46256 * 120.00451 * 5.77908 * 9 4 2 12 12 C 1.35022 * 120.00007 * 172.64844 * 11 9 4 13 13 C 1.46962 * 120.00180 * 346.17649 * 12 11 9 14 14 C 1.40029 * 120.09750 * 317.68802 * 13 12 11 15 15 C 1.37601 * 119.89602 * 179.79097 * 14 13 12 16 16 C 1.39183 * 120.10046 * 0.48562 * 15 14 13 17 17 O 1.35564 * 119.90093 * 179.76575 * 16 15 14 18 18 C 1.34780 * 117.00616 * 174.04028 * 17 16 15 19 19 H 1.08007 * 119.99104 * 5.10092 * 18 17 16 20 20 C 1.38715 * 120.00121 * 185.10669 * 18 17 16 21 21 N 1.31505 * 120.00566 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99555 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47446 * 59.99974 * 22 20 18 24 24 H 1.48497 * 109.46864 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47175 * 299.99602 * 22 20 18 26 26 C 1.39176 * 120.20092 * 359.74681 * 16 15 14 27 27 C 1.37601 * 120.10627 * 0.02562 * 26 16 15 28 28 H 1.09004 * 109.46961 * 299.99507 * 1 2 3 29 29 H 1.09006 * 109.47136 * 59.99603 * 1 2 3 30 30 H 1.08998 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46961 * 240.00493 * 2 1 3 32 32 H 1.08993 * 109.47177 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47617 * 300.00613 * 3 2 1 34 34 H 1.09006 * 109.47139 * 60.00023 * 3 2 1 35 35 H 1.09003 * 109.47392 * 30.00440 * 5 4 2 36 36 H 1.08997 * 109.46967 * 150.00392 * 5 4 2 37 37 H 0.96703 * 117.00002 * 180.02562 * 8 6 5 38 38 H 1.07994 * 119.99726 * 352.92572 * 11 9 4 39 39 H 1.08001 * 119.99805 * 166.17557 * 12 11 9 40 40 H 1.07998 * 120.05154 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.95093 * 180.22803 * 15 14 13 42 42 H 0.96994 * 120.00451 * 180.02562 * 21 20 18 43 43 H 1.07997 * 119.94712 * 180.02562 * 26 16 15 44 44 H 1.07990 * 120.05619 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5672 -0.2649 2.5233 6 6 2.5025 0.7891 3.0577 7 8 3.4491 1.1474 2.3977 8 8 2.2839 1.3297 4.2666 9 6 2.8826 -1.7177 1.0755 10 8 3.2068 -2.3588 2.0581 11 6 3.4310 -2.0619 -0.2359 12 6 4.4063 -2.9901 -0.3374 13 6 5.1276 -3.4324 0.8642 14 6 5.5296 -2.4974 1.8259 15 6 6.2010 -2.9167 2.9515 16 6 6.4896 -4.2665 3.1299 17 8 7.1554 -4.6745 4.2381 18 6 7.2958 -6.0035 4.4131 19 1 6.9595 -6.6873 3.6477 20 6 7.8721 -6.4928 5.5761 21 7 8.2820 -5.6601 6.5078 22 14 8.0660 -8.3348 5.8189 23 1 8.9168 -8.8901 4.7358 24 1 8.7057 -8.5962 7.1333 25 1 6.7303 -8.9825 5.7804 26 6 6.0963 -5.1988 2.1743 27 6 5.4203 -4.7894 1.0479 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 0.5603 0.1461 2.4503 36 1 1.5620 -1.1214 3.1973 37 1 2.9107 2.0023 4.5666 38 1 3.0589 -1.5704 -1.1227 39 1 4.6562 -3.4075 -1.3016 40 1 5.3104 -1.4492 1.6859 41 1 6.5082 -2.1967 3.6956 42 1 8.6853 -6.0023 7.3208 43 1 6.3219 -6.2452 2.3171 44 1 5.1152 -5.5135 0.3071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493754442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:47 Heat of formation + Delta-G solvation = -87.305002 kcal Electronic energy + Delta-G solvation = -28790.589789 eV Core-core repulsion = 24675.368953 eV Total energy + Delta-G solvation = -4115.220836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79379 -39.57771 -38.77208 -37.12368 -36.18464 -35.95010 -33.18060 -32.18143 -31.99995 -30.10644 -29.33530 -27.57375 -27.44620 -25.41526 -23.49667 -22.26382 -21.86886 -21.53111 -20.21328 -18.45208 -18.20449 -17.88997 -17.59154 -16.84633 -16.71346 -16.00142 -15.56807 -14.90170 -14.65412 -14.49175 -14.30275 -14.21810 -13.80849 -13.49507 -13.37068 -13.33128 -13.16171 -12.93478 -12.73120 -12.52305 -12.39480 -12.20913 -11.97065 -11.68506 -11.64283 -11.42151 -11.39960 -11.13022 -10.97274 -10.66814 -10.62646 -10.58321 -10.39935 -9.55032 -9.39577 -9.15785 -8.87526 -8.67412 -7.93906 -6.86201 -6.44824 -4.00639 1.20676 2.14808 2.39817 2.56832 2.73593 3.14113 3.15475 3.18034 3.19097 3.65353 3.97977 4.42886 4.59803 4.71240 4.78496 4.88594 4.98009 5.11583 5.17087 5.25946 5.27977 5.31391 5.37581 5.39683 5.51758 5.57024 5.68816 5.74600 5.81602 5.88047 6.08760 6.23912 6.28541 6.38231 6.43409 6.46802 6.60921 6.81159 7.04468 7.13080 7.34887 7.40246 7.48986 7.51172 7.81876 7.93402 8.01665 8.40682 9.00554 9.72594 10.72963 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002920 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.234310 B = 9585.924810 C =10515.816642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 C -0.159 4.159 4 N -0.600 5.600 5 C 0.123 3.877 6 C 0.458 3.542 7 O -0.501 6.501 8 O -0.520 6.520 9 C 0.551 3.449 10 O -0.507 6.507 11 C -0.271 4.271 12 C 0.032 3.968 13 C -0.189 4.189 14 C 0.007 3.993 15 C -0.201 4.201 16 C 0.172 3.828 17 O -0.172 6.172 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.249 4.249 27 C -0.040 4.040 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.409 0.591 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 12.280 -13.468 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.025 3.975 3 C -0.217 4.217 4 N -0.336 5.336 5 C -0.002 4.002 6 C 0.298 3.702 7 O -0.387 6.387 8 O -0.331 6.331 9 C 0.344 3.656 10 O -0.382 6.382 11 C -0.291 4.291 12 C 0.013 3.987 13 C -0.190 4.190 14 C -0.011 4.011 15 C -0.221 4.221 16 C 0.117 3.883 17 O -0.074 6.074 18 C -0.467 4.467 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.194 1.194 26 C -0.269 4.269 27 C -0.059 4.059 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.268 0.732 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.144 0.856 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.426 11.820 -12.804 23.273 hybrid contribution 0.397 -0.239 0.306 0.555 sum -15.030 11.581 -12.498 22.720 Atomic orbital electron populations 1.22210 0.94913 1.02758 1.02485 1.21310 0.94113 0.93780 0.88305 1.22204 1.02926 0.95217 1.01367 1.47723 1.47652 1.33510 1.04667 1.20692 0.95923 0.96756 0.86827 1.24237 0.85601 0.81573 0.78751 1.90722 1.29910 1.59713 1.58366 1.84513 1.57415 1.55619 1.35580 1.18538 0.77913 0.78886 0.90267 1.90996 1.57545 1.50072 1.39582 1.22626 1.04323 1.06301 0.95886 1.22369 0.89261 0.89759 0.97332 1.18308 1.09172 0.93826 0.97710 1.20521 0.92060 0.97329 0.91199 1.20012 1.08371 0.93449 1.00220 1.19525 0.88873 0.92850 0.87076 1.83904 1.61773 1.26116 1.35647 1.21356 1.41607 0.79269 1.04434 0.88920 1.25325 0.96272 1.00500 0.94432 1.70010 1.37029 1.34992 1.07398 0.85766 0.78996 0.80471 0.78125 1.19442 1.20253 1.19419 1.20955 1.08822 1.00150 0.96947 1.20753 0.95028 0.93922 0.96172 0.92329 0.91155 0.91761 0.88004 0.91081 0.91997 0.93164 0.86618 0.85452 0.73186 0.85694 0.85933 0.87935 0.86955 0.91888 0.85618 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 9.06 37.16 0.34 -0.66 16 2 C 0.13 1.07 3.13 -67.93 -0.21 0.86 16 3 C -0.16 -1.36 7.92 37.16 0.29 -1.07 16 4 N -0.60 -7.00 1.97 -169.16 -0.33 -7.34 16 5 C 0.12 1.33 5.62 -5.20 -0.03 1.30 16 6 C 0.46 5.61 7.41 36.01 0.27 5.88 16 7 O -0.50 -7.55 14.89 -18.76 -0.28 -7.83 16 8 O -0.52 -5.17 13.42 -39.25 -0.53 -5.69 16 9 C 0.55 8.40 6.56 -13.04 -0.09 8.32 16 10 O -0.51 -9.95 11.98 5.17 0.06 -9.89 16 11 C -0.27 -3.55 9.17 -37.50 -0.34 -3.90 16 12 C 0.03 0.47 9.80 -37.19 -0.36 0.10 16 13 C -0.19 -3.59 4.51 -105.02 -0.47 -4.06 16 14 C 0.01 0.16 6.70 -39.14 -0.26 -0.11 16 15 C -0.20 -4.80 9.97 -39.46 -0.39 -5.19 16 16 C 0.17 4.45 6.66 -38.88 -0.26 4.19 16 17 O -0.17 -5.13 9.74 0.76 0.01 -5.13 16 18 C -0.39 -11.24 9.48 30.91 0.29 -10.95 16 19 H 0.09 2.46 5.19 -52.48 -0.27 2.19 16 20 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 21 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 22 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 C -0.25 -5.76 9.14 -39.47 -0.36 -6.12 16 27 C -0.04 -0.79 9.79 -39.14 -0.38 -1.18 16 28 H 0.06 0.33 6.51 -51.93 -0.34 -0.01 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.77 5.25 -51.93 -0.27 0.49 16 32 H 0.07 0.79 7.50 -51.93 -0.39 0.40 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.45 6.76 -51.93 -0.35 0.10 16 35 H 0.12 0.83 6.15 -51.93 -0.32 0.51 16 36 H 0.13 1.53 7.35 -51.93 -0.38 1.15 16 37 H 0.41 2.57 9.10 45.56 0.41 2.99 16 38 H 0.13 1.19 5.84 -52.49 -0.31 0.88 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.10 2.09 7.05 -52.49 -0.37 1.72 16 41 H 0.11 2.65 8.06 -52.49 -0.42 2.23 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 2.86 5.62 -52.49 -0.30 2.56 16 44 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -36.54 366.20 -6.44 -42.98 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.55 Total: 8.07 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.07 Total: -11.58 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.42 Total: -32.30 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.74 Total: -28.54 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.54 -6.44 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493754442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.322 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds