Wall clock time and date at job start Tue Mar 31 2020 16:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 N 1.46502 * 109.47087 * 120.00254 * 2 1 3 5 5 C 1.46493 * 120.00003 * 305.54018 * 4 2 1 6 6 C 1.50702 * 109.47476 * 270.00193 * 5 4 2 7 7 O 1.20833 * 119.99523 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00214 * 179.97438 * 6 5 4 9 9 C 1.34769 * 119.99561 * 125.54358 * 4 2 1 10 10 O 1.21724 * 119.99633 * 185.77959 * 9 4 2 11 11 C 1.46256 * 120.00451 * 5.77908 * 9 4 2 12 12 C 1.35022 * 120.00007 * 172.64844 * 11 9 4 13 13 C 1.46962 * 120.00180 * 346.17649 * 12 11 9 14 14 C 1.40029 * 120.09750 * 317.68802 * 13 12 11 15 15 C 1.37601 * 119.89602 * 179.79097 * 14 13 12 16 16 C 1.39183 * 120.10046 * 0.48562 * 15 14 13 17 17 O 1.35564 * 119.90093 * 179.76575 * 16 15 14 18 18 C 1.34780 * 117.00616 * 174.04028 * 17 16 15 19 19 H 1.08007 * 119.99104 * 5.10092 * 18 17 16 20 20 C 1.38715 * 120.00121 * 185.10669 * 18 17 16 21 21 N 1.31505 * 120.00566 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99555 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47446 * 59.99974 * 22 20 18 24 24 H 1.48497 * 109.46864 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47175 * 299.99602 * 22 20 18 26 26 C 1.39176 * 120.20092 * 359.74681 * 16 15 14 27 27 C 1.37601 * 120.10627 * 0.02562 * 26 16 15 28 28 H 1.09004 * 109.46961 * 299.99507 * 1 2 3 29 29 H 1.09006 * 109.47136 * 59.99603 * 1 2 3 30 30 H 1.08998 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46961 * 240.00493 * 2 1 3 32 32 H 1.08993 * 109.47177 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47617 * 300.00613 * 3 2 1 34 34 H 1.09006 * 109.47139 * 60.00023 * 3 2 1 35 35 H 1.09003 * 109.47392 * 30.00440 * 5 4 2 36 36 H 1.08997 * 109.46967 * 150.00392 * 5 4 2 37 37 H 0.96703 * 117.00002 * 180.02562 * 8 6 5 38 38 H 1.07994 * 119.99726 * 352.92572 * 11 9 4 39 39 H 1.08001 * 119.99805 * 166.17557 * 12 11 9 40 40 H 1.07998 * 120.05154 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.95093 * 180.22803 * 15 14 13 42 42 H 0.96994 * 120.00451 * 180.02562 * 21 20 18 43 43 H 1.07997 * 119.94712 * 180.02562 * 26 16 15 44 44 H 1.07990 * 120.05619 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5672 -0.2649 2.5233 6 6 2.5025 0.7891 3.0577 7 8 3.4491 1.1474 2.3977 8 8 2.2839 1.3297 4.2666 9 6 2.8826 -1.7177 1.0755 10 8 3.2068 -2.3588 2.0581 11 6 3.4310 -2.0619 -0.2359 12 6 4.4063 -2.9901 -0.3374 13 6 5.1276 -3.4324 0.8642 14 6 5.5296 -2.4974 1.8259 15 6 6.2010 -2.9167 2.9515 16 6 6.4896 -4.2665 3.1299 17 8 7.1554 -4.6745 4.2381 18 6 7.2958 -6.0035 4.4131 19 1 6.9595 -6.6873 3.6477 20 6 7.8721 -6.4928 5.5761 21 7 8.2820 -5.6601 6.5078 22 14 8.0660 -8.3348 5.8189 23 1 8.9168 -8.8901 4.7358 24 1 8.7057 -8.5962 7.1333 25 1 6.7303 -8.9825 5.7804 26 6 6.0963 -5.1988 2.1743 27 6 5.4203 -4.7894 1.0479 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 0.5603 0.1461 2.4503 36 1 1.5620 -1.1214 3.1973 37 1 2.9107 2.0023 4.5666 38 1 3.0589 -1.5704 -1.1227 39 1 4.6562 -3.4075 -1.3016 40 1 5.3104 -1.4492 1.6859 41 1 6.5082 -2.1967 3.6956 42 1 8.6853 -6.0023 7.3208 43 1 6.3219 -6.2452 2.3171 44 1 5.1152 -5.5135 0.3071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493754442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:46 Heat of formation + Delta-G solvation = -112.681396 kcal Electronic energy + Delta-G solvation = -28791.690192 eV Core-core repulsion = 24675.368953 eV Total energy + Delta-G solvation = -4116.321239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82422 -40.90874 -40.36044 -38.50267 -37.53283 -36.94256 -34.68723 -34.00162 -32.88113 -31.85968 -30.56388 -28.97008 -28.02342 -27.40845 -24.77441 -23.58406 -23.09180 -22.92402 -21.47918 -19.92966 -19.34776 -19.17823 -18.93674 -18.43621 -17.78396 -17.00485 -16.73636 -16.40431 -16.29091 -15.82203 -15.79230 -15.53665 -15.11182 -14.94494 -14.65446 -14.57869 -14.37332 -14.04439 -13.90226 -13.85813 -13.58103 -13.46844 -13.05275 -12.93779 -12.86988 -12.63559 -12.40603 -12.39562 -12.30629 -12.24753 -12.14964 -11.71406 -11.63222 -11.26296 -10.93277 -10.72691 -10.39274 -9.91412 -9.60371 -8.59612 -8.49498 -6.17240 -0.07817 0.66918 1.06246 1.17010 1.33149 1.46271 1.50650 1.69998 2.16621 2.23040 2.56109 2.85613 3.17892 3.48807 3.65854 3.78495 4.00266 4.07121 4.11865 4.12732 4.18736 4.29427 4.34187 4.37977 4.51121 4.58374 4.73029 4.75719 4.79243 4.98990 5.00097 5.03515 5.08824 5.20819 5.24130 5.29531 5.38760 5.41899 5.53070 5.61504 5.63975 5.68926 5.81203 6.00342 6.20903 6.39846 6.93089 6.93969 7.26317 7.75480 8.73659 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002920 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.234310 B = 9585.924810 C =10515.816642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 C -0.153 4.153 4 N -0.592 5.592 5 C 0.118 3.882 6 C 0.459 3.541 7 O -0.535 6.535 8 O -0.516 6.516 9 C 0.535 3.465 10 O -0.563 6.563 11 C -0.240 4.240 12 C 0.011 3.989 13 C -0.159 4.159 14 C 0.009 3.991 15 C -0.221 4.221 16 C 0.130 3.870 17 O -0.231 6.231 18 C -0.417 4.417 19 H 0.105 0.895 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.023 2.977 23 H -0.253 1.253 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.255 4.255 27 C -0.043 4.043 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.425 0.575 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.274 0.726 43 H 0.124 0.876 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.970 12.348 -17.749 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 C -0.211 4.211 4 N -0.326 5.326 5 C -0.007 4.007 6 C 0.300 3.700 7 O -0.424 6.424 8 O -0.329 6.329 9 C 0.328 3.672 10 O -0.442 6.442 11 C -0.260 4.260 12 C -0.008 4.008 13 C -0.160 4.160 14 C -0.010 4.010 15 C -0.241 4.241 16 C 0.079 3.921 17 O -0.137 6.137 18 C -0.493 4.493 19 H 0.122 0.878 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.841 3.159 23 H -0.178 1.178 24 H -0.195 1.195 25 H -0.181 1.181 26 C -0.274 4.274 27 C -0.060 4.060 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.173 0.827 36 H 0.130 0.870 37 H 0.286 0.714 38 H 0.192 0.808 39 H 0.192 0.808 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.142 0.858 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.630 11.967 -17.150 28.007 hybrid contribution 1.016 0.158 1.333 1.684 sum -17.614 12.125 -15.817 26.598 Atomic orbital electron populations 1.22180 0.92594 1.03141 1.03884 1.21647 0.95902 0.93295 0.87120 1.22144 1.01033 0.95610 1.02352 1.47833 1.46159 1.32428 1.06144 1.20892 0.97522 0.95932 0.86315 1.24521 0.85149 0.81433 0.78875 1.90714 1.31271 1.61061 1.59371 1.84480 1.57841 1.55979 1.34572 1.19149 0.78147 0.79275 0.90588 1.90995 1.59479 1.52332 1.41430 1.23137 1.02654 1.03760 0.96401 1.22649 0.90129 0.90925 0.97093 1.18868 1.06005 0.93107 0.97984 1.20599 0.91409 0.98085 0.90863 1.20123 1.09667 0.92824 1.01452 1.19956 0.90606 0.94113 0.87469 1.83875 1.65019 1.26744 1.38059 1.21888 1.42427 0.79573 1.05432 0.87815 1.26707 0.95476 1.06346 0.93597 1.70172 1.39587 1.37752 1.08455 0.84603 0.79608 0.73115 0.78567 1.17755 1.19488 1.18121 1.21122 1.09133 0.99586 0.97554 1.21218 0.93849 0.95263 0.95709 0.91913 0.88868 0.91856 0.86481 0.93898 0.89263 0.93941 0.82661 0.87047 0.71394 0.80830 0.80849 0.87537 0.88757 0.91722 0.85826 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.06 71.98 0.65 -0.52 16 2 C 0.12 1.52 3.13 44.99 0.14 1.66 16 3 C -0.15 -2.13 7.92 71.98 0.57 -1.56 16 4 N -0.59 -12.31 1.97 -807.32 -1.59 -13.90 16 5 C 0.12 2.38 5.62 85.64 0.48 2.86 16 6 C 0.46 11.00 7.41 71.24 0.53 11.53 16 7 O -0.53 -16.11 14.89 21.94 0.33 -15.79 16 8 O -0.52 -9.98 13.42 -51.39 -0.69 -10.67 16 9 C 0.54 15.08 6.56 86.33 0.57 15.65 16 10 O -0.56 -21.94 11.98 -4.43 -0.05 -21.99 16 11 C -0.24 -5.13 9.17 23.61 0.22 -4.92 16 12 C 0.01 0.27 9.80 23.82 0.23 0.50 16 13 C -0.16 -5.71 4.51 -20.12 -0.09 -5.80 16 14 C 0.01 0.38 6.70 22.55 0.15 0.53 16 15 C -0.22 -11.33 9.97 22.35 0.22 -11.11 16 16 C 0.13 7.20 6.66 22.72 0.15 7.35 16 17 O -0.23 -15.01 9.74 -20.19 -0.20 -15.20 16 18 C -0.42 -25.64 9.48 67.93 0.64 -24.99 16 19 H 0.10 5.81 5.19 -2.91 -0.02 5.79 16 20 C -0.02 -1.41 5.49 84.86 0.47 -0.95 16 21 N -0.92 -59.00 13.67 21.62 0.30 -58.71 16 22 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 23 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 C -0.25 -12.08 9.14 22.34 0.20 -11.88 16 27 C -0.04 -1.59 9.79 22.55 0.22 -1.37 16 28 H 0.06 0.42 6.51 -2.39 -0.02 0.41 16 29 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.12 1.08 5.25 -2.39 -0.01 1.06 16 32 H 0.04 0.85 7.50 -2.39 -0.02 0.84 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.04 0.66 6.76 -2.38 -0.02 0.64 16 35 H 0.16 1.80 6.15 -2.39 -0.01 1.78 16 36 H 0.11 2.69 7.35 -2.39 -0.02 2.67 16 37 H 0.42 5.20 9.10 -74.06 -0.67 4.53 16 38 H 0.17 2.07 5.84 -2.91 -0.02 2.05 16 39 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.11 4.40 7.05 -2.91 -0.02 4.37 16 41 H 0.09 4.97 8.06 -2.91 -0.02 4.94 16 42 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 43 H 0.12 5.79 5.62 -2.91 -0.02 5.77 16 44 H 0.15 4.31 8.06 -2.92 -0.02 4.28 16 Total: -1.00 -90.12 366.20 5.86 -84.26 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.38 Total: 28.69 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 5.36 Total: -23.02 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -1.30 Total: -72.61 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -0.61 Total: -63.66 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -90.12 5.86 -84.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493754442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.422 kcal (2) G-P(sol) polarization free energy of solvation -90.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds