Wall clock time and date at job start Tue Mar 31 2020 17:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.66947 * 2 1 4 4 C 1.54892 * 110.75648 * 236.76859 * 2 1 3 5 5 C 1.54266 * 104.19217 * 203.73900 * 4 2 1 6 6 C 1.53879 * 106.64412 * 23.58524 * 5 4 2 7 7 C 1.52994 * 110.03246 * 240.74244 * 6 5 4 8 8 N 1.46507 * 109.46981 * 303.06610 * 7 6 5 9 9 S 1.65594 * 120.00114 * 164.95301 * 8 7 6 10 10 O 1.42098 * 104.27839 * 181.07513 * 9 8 7 11 11 O 1.42102 * 104.27722 * 308.93229 * 9 8 7 12 12 C 1.81402 * 104.45048 * 65.00056 * 9 8 7 13 13 C 1.53001 * 109.47111 * 179.97438 * 12 9 8 14 14 C 1.50697 * 109.47020 * 179.97438 * 13 12 9 15 15 H 1.07996 * 120.00068 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99903 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00182 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47012 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46948 * 119.99727 * 18 16 14 21 21 H 1.48496 * 109.47332 * 240.00019 * 18 16 14 22 22 C 1.53000 * 110.03317 * 119.30681 * 6 5 4 23 23 C 1.50702 * 109.46614 * 184.18049 * 22 6 5 24 24 O 1.20819 * 120.00487 * 5.26526 * 23 22 6 25 25 O 1.34234 * 119.99583 * 185.27344 * 23 22 6 26 26 C 1.54379 * 106.54097 * 0.03487 * 6 5 4 27 27 H 1.09001 * 109.46562 * 181.77887 * 1 2 3 28 28 H 1.09001 * 109.47495 * 301.78182 * 1 2 3 29 29 H 1.09004 * 109.47166 * 61.78181 * 1 2 3 30 30 H 1.08995 * 110.48781 * 85.06160 * 4 2 1 31 31 H 1.09001 * 110.48563 * 322.41382 * 4 2 1 32 32 H 1.08999 * 110.03431 * 142.89247 * 5 4 2 33 33 H 1.08997 * 110.03422 * 264.27569 * 5 4 2 34 34 H 1.08995 * 109.47754 * 63.06769 * 7 6 5 35 35 H 1.08998 * 109.47134 * 183.06967 * 7 6 5 36 36 H 0.97000 * 119.99831 * 344.95931 * 8 7 6 37 37 H 1.09000 * 109.47183 * 299.99981 * 12 9 8 38 38 H 1.08997 * 109.46718 * 59.99943 * 12 9 8 39 39 H 1.08993 * 109.47687 * 300.00274 * 13 12 9 40 40 H 1.09004 * 109.46870 * 60.00198 * 13 12 9 41 41 H 0.97001 * 120.00052 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.46882 * 304.17287 * 22 6 5 43 43 H 1.08994 * 109.47394 * 64.17659 * 22 6 5 44 44 H 0.96692 * 117.00112 * 179.97438 * 25 23 22 45 45 H 1.09000 * 110.46128 * 217.68342 * 26 6 5 46 46 H 1.09000 * 110.61959 * 95.09749 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0789 -0.7937 -1.2115 5 6 3.4932 -1.2253 -0.7716 6 6 3.4945 -1.2278 0.7672 7 6 4.5325 -0.2338 1.2920 8 7 5.8506 -0.5723 0.7496 9 16 7.0880 0.5248 0.8354 10 8 8.1793 -0.1274 0.2008 11 8 6.5355 1.7189 0.2985 12 6 7.4042 0.7124 2.6118 13 6 8.5418 1.7132 2.8244 14 6 8.8040 1.8696 4.3001 15 1 8.2182 1.3107 5.0148 16 6 9.7919 2.7261 4.7378 17 7 10.5049 3.4070 3.8675 18 14 10.1174 2.9193 6.5670 19 1 9.1867 2.0494 7.3300 20 1 11.5181 2.5260 6.8648 21 1 9.9067 4.3356 6.9605 22 6 3.8026 -2.6327 1.2888 23 6 3.6998 -2.6440 2.7923 24 8 3.3179 -1.6594 3.3792 25 8 4.0327 -3.7480 3.4794 26 6 2.0790 -0.7980 1.2086 27 1 -0.3632 -1.0272 0.0319 28 1 -0.3634 0.5412 0.8736 29 1 -0.3634 0.4859 -0.9056 30 1 2.1320 -0.1555 -2.0934 31 1 1.4575 -1.6673 -1.4085 32 1 3.7121 -2.2250 -1.1467 33 1 4.2327 -0.5167 -1.1444 34 1 4.2597 0.7746 0.9811 35 1 4.5641 -0.2823 2.3804 36 1 5.9985 -1.4391 0.3400 37 1 6.5028 1.0763 3.1048 38 1 7.6854 -0.2520 3.0345 39 1 9.4431 1.3490 2.3314 40 1 8.2609 2.6778 2.4015 41 1 11.2001 4.0094 4.1754 42 1 3.0871 -3.3406 0.8704 43 1 4.8118 -2.9175 0.9914 44 1 3.9508 -3.7074 4.4420 45 1 2.1320 -0.1628 2.0929 46 1 1.4562 -1.6709 1.4039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547900986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:51 Heat of formation + Delta-G solvation = -195.839510 kcal Electronic energy + Delta-G solvation = -28048.856198 eV Core-core repulsion = 24064.372904 eV Total energy + Delta-G solvation = -3984.483294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01831 -39.13663 -36.56059 -36.29837 -35.45253 -35.12068 -33.87520 -32.31597 -31.14347 -30.05226 -28.17979 -25.82618 -25.57967 -24.18212 -21.93994 -21.65364 -20.28446 -19.16416 -18.89036 -18.20897 -17.47093 -17.14655 -16.46073 -16.17685 -15.86673 -15.45634 -15.27604 -14.89248 -14.56636 -14.43413 -14.24295 -13.69052 -13.57323 -13.35915 -13.16913 -12.97565 -12.51528 -12.36950 -12.03728 -11.82236 -11.74277 -11.63120 -11.57815 -11.51333 -11.47842 -11.17396 -11.08346 -10.95848 -10.94021 -10.75512 -10.72539 -10.60253 -10.43199 -10.38307 -10.36756 -9.75477 -9.41368 -8.97615 -8.49415 -6.11307 -4.16531 0.81854 2.00975 2.80946 3.17165 3.26136 3.33309 3.37050 4.12943 4.23784 4.26720 4.33465 4.39964 4.70037 4.79788 4.82655 4.91710 4.99854 5.16852 5.22254 5.23953 5.24374 5.33381 5.38873 5.41988 5.51117 5.57665 5.66208 5.68997 5.74780 5.79273 5.84968 5.87847 5.95529 6.01676 6.11430 6.16586 6.26071 6.37546 6.51360 7.08632 7.31749 7.37911 7.69172 7.82186 8.19257 8.87103 9.48150 10.99796 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.003342 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.267077 B = 8376.906040 C = 9079.495535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.054 4.054 7 C 0.118 3.882 8 N -1.130 6.130 9 S 2.593 3.407 10 O -0.969 6.969 11 O -0.966 6.966 12 C -0.590 4.590 13 C 0.028 3.972 14 C -0.519 4.519 15 H 0.061 0.939 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.106 4.106 23 C 0.476 3.524 24 O -0.503 6.503 25 O -0.521 6.521 26 C -0.102 4.102 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.411 0.589 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.784 -14.504 -7.020 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.056 4.056 7 C -0.008 4.008 8 N -0.887 5.887 9 S 2.691 3.309 10 O -0.959 6.959 11 O -0.956 6.956 12 C -0.723 4.723 13 C -0.011 4.011 14 C -0.558 4.558 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.144 4.144 23 C 0.318 3.682 24 O -0.390 6.390 25 O -0.333 6.333 26 C -0.140 4.140 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.242 0.758 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.270 0.730 45 H 0.102 0.898 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.347 -13.530 -8.004 24.928 hybrid contribution 0.163 -0.461 2.172 2.227 sum -19.184 -13.991 -5.831 24.449 Atomic orbital electron populations 1.21738 0.95045 1.01528 1.01636 1.22196 0.95360 0.99771 0.94919 0.90147 1.22414 0.95603 0.99659 0.97916 1.22290 0.98252 1.02342 0.92832 1.21241 0.96263 0.92170 0.95881 1.21594 0.81161 0.99148 0.98917 1.55869 1.24090 1.32693 1.76089 1.05515 0.72772 0.73533 0.79111 1.93550 1.52925 1.74955 1.74477 1.93539 1.77719 1.47114 1.77186 1.30439 1.10500 1.10292 1.21076 1.18963 0.90157 0.92152 0.99841 1.21043 1.18481 1.25526 0.90774 0.92030 1.25070 0.95776 0.95437 0.98238 1.69965 1.21948 1.27119 1.33830 0.86418 0.78153 0.78031 0.84711 1.19662 1.20811 1.20775 1.21602 1.05652 0.99579 0.87521 1.23480 0.73042 0.79988 0.91666 1.90721 1.42480 1.34458 1.71351 1.84525 1.80773 1.41255 1.26739 1.22529 0.92862 1.00237 0.98333 0.92887 0.92637 0.92762 0.91534 0.91696 0.91307 0.90138 0.89705 0.90262 0.75771 0.86301 0.86276 0.94862 0.94811 0.92601 0.87246 0.87575 0.73041 0.89809 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.27 37.16 0.34 -0.67 16 2 C -0.10 -0.86 3.49 -88.63 -0.31 -1.17 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -0.89 6.28 -25.07 -0.16 -1.05 16 5 C -0.12 -0.97 5.65 -25.61 -0.14 -1.11 16 6 C -0.05 -0.48 0.36 -153.33 -0.06 -0.53 16 7 C 0.12 1.39 4.52 -4.04 -0.02 1.37 16 8 N -1.13 -14.20 5.03 -10.61 -0.05 -14.26 16 9 S 2.59 46.29 5.46 -107.50 -0.59 45.71 16 10 O -0.97 -19.94 18.08 -57.54 -1.04 -20.98 16 11 O -0.97 -20.03 17.50 -57.54 -1.01 -21.03 16 12 C -0.59 -11.53 6.01 37.16 0.22 -11.31 16 13 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 14 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.11 -0.78 4.41 -27.88 -0.12 -0.90 16 23 C 0.48 4.42 7.69 36.01 0.28 4.69 16 24 O -0.50 -5.98 13.03 -18.74 -0.24 -6.23 16 25 O -0.52 -4.02 13.42 -39.27 -0.53 -4.55 16 26 C -0.10 -0.89 3.89 -25.02 -0.10 -0.99 16 27 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 32 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 33 H 0.08 0.79 7.26 -51.93 -0.38 0.41 16 34 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 35 H 0.08 0.99 5.93 -51.93 -0.31 0.68 16 36 H 0.41 4.13 7.14 -34.47 -0.25 3.89 16 37 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 38 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.68 6.85 -51.93 -0.36 0.33 16 44 H 0.41 1.78 9.10 45.56 0.41 2.20 16 45 H 0.08 0.87 6.96 -51.93 -0.36 0.51 16 46 H 0.07 0.53 7.72 -51.93 -0.40 0.13 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -36.78 379.61 -9.25 -46.03 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.62 Total: 3.56 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -0.61 Total: -24.41 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.68 Total: -40.23 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -2.82 Total: -52.79 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 46.29 SS G_CDS: -0.59 Total: 45.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.78 -9.25 -46.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547900986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.813 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds