Wall clock time and date at job start Tue Mar 31 2020 17:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.67168 * 2 1 4 4 C 1.54886 * 110.91038 * 123.34265 * 2 1 3 5 5 C 1.54270 * 104.19290 * 156.33083 * 4 2 1 6 6 C 1.53876 * 106.59715 * 336.38899 * 5 4 2 7 7 C 1.53001 * 110.03169 * 240.71321 * 6 5 4 8 8 N 1.46501 * 109.47112 * 181.03497 * 7 6 5 9 9 S 1.65598 * 120.00195 * 165.49814 * 8 7 6 10 10 O 1.42099 * 104.27762 * 181.07040 * 9 8 7 11 11 O 1.42100 * 104.27842 * 308.93109 * 9 8 7 12 12 C 1.81404 * 104.44729 * 64.99993 * 9 8 7 13 13 C 1.53003 * 109.47025 * 179.97438 * 12 9 8 14 14 C 1.50697 * 109.47129 * 179.97438 * 13 12 9 15 15 H 1.08005 * 120.00166 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99842 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00552 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99831 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46828 * 90.00294 * 18 16 14 20 20 H 1.48491 * 109.47136 * 209.99979 * 18 16 14 21 21 H 1.48496 * 109.46946 * 330.00325 * 18 16 14 22 22 C 1.53003 * 110.07128 * 119.30762 * 6 5 4 23 23 C 1.50703 * 109.47003 * 59.72497 * 22 6 5 24 24 O 1.20823 * 120.00181 * 353.93145 * 23 22 6 25 25 O 1.34225 * 119.99875 * 173.93236 * 23 22 6 26 26 C 1.54262 * 106.59919 * 0.02562 * 6 5 4 27 27 H 1.08994 * 109.47267 * 183.23652 * 1 2 3 28 28 H 1.09001 * 109.46954 * 303.23727 * 1 2 3 29 29 H 1.09002 * 109.47135 * 63.23426 * 1 2 3 30 30 H 1.08998 * 110.48932 * 275.00555 * 4 2 1 31 31 H 1.09004 * 110.49129 * 37.65742 * 4 2 1 32 32 H 1.09001 * 110.03350 * 217.10695 * 5 4 2 33 33 H 1.09000 * 110.03522 * 95.67622 * 5 4 2 34 34 H 1.08999 * 109.46972 * 61.04195 * 7 6 5 35 35 H 1.08995 * 109.47313 * 301.03907 * 7 6 5 36 36 H 0.97005 * 119.99900 * 345.49846 * 8 7 6 37 37 H 1.08994 * 109.47083 * 300.00259 * 12 9 8 38 38 H 1.09006 * 109.47028 * 60.00470 * 12 9 8 39 39 H 1.09003 * 109.47313 * 300.00363 * 13 12 9 40 40 H 1.08996 * 109.46970 * 59.99855 * 13 12 9 41 41 H 0.96994 * 120.00777 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.47233 * 179.72191 * 22 6 5 43 43 H 1.08996 * 109.47311 * 299.72743 * 22 6 5 44 44 H 0.96704 * 117.00118 * 179.97438 * 25 23 22 45 45 H 1.09001 * 110.48766 * 142.29226 * 26 6 5 46 46 H 1.09004 * 110.48412 * 264.79798 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0828 -0.7953 1.2087 5 6 3.4974 -1.2223 0.7654 6 6 3.4948 -1.2214 -0.7733 7 6 3.8047 -2.6246 -1.2987 8 7 3.8236 -2.6044 -2.7635 9 16 4.4772 -3.8748 -3.6008 10 8 4.3452 -3.5004 -4.9652 11 8 5.7574 -4.0606 -3.0126 12 6 3.3911 -5.2763 -3.2173 13 6 3.8959 -6.5258 -3.9418 14 6 2.9941 -7.6902 -3.6228 15 1 2.1454 -7.5527 -2.9691 16 6 3.2517 -8.9308 -4.1663 17 7 4.2847 -9.0983 -4.9627 18 14 2.1333 -10.3741 -3.7714 19 1 1.0371 -10.4388 -4.7712 20 1 2.9175 -11.6343 -3.8145 21 1 1.5561 -10.1963 -2.4148 22 6 4.5296 -0.2248 -1.2995 23 6 5.8983 -0.6119 -0.8016 24 8 6.0199 -1.5175 -0.0111 25 8 6.9824 0.0495 -1.2363 26 6 2.0791 -0.7932 -1.2114 27 1 -0.3633 -1.0260 0.0580 28 1 -0.3633 0.5633 0.8596 29 1 -0.3633 0.4628 -0.9176 30 1 2.1358 -0.1589 2.0921 31 1 1.4639 -1.6709 1.4046 32 1 3.7194 -2.2224 1.1378 33 1 4.2358 -0.5123 1.1380 34 1 3.0380 -3.3188 -0.9549 35 1 4.7780 -2.9449 -0.9272 36 1 3.4531 -1.8468 -3.2429 37 1 3.3929 -5.4537 -2.1419 38 1 2.3768 -5.0507 -3.5468 39 1 3.8939 -6.3481 -5.0172 40 1 4.9103 -6.7516 -3.6129 41 1 4.4658 -9.9709 -5.3454 42 1 4.5231 -0.2356 -2.3894 43 1 4.2835 0.7759 -0.9446 44 1 7.8388 -0.2345 -0.8884 45 1 2.1293 -0.1559 -2.0943 46 1 1.4598 -1.6683 -1.4086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547900987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:54 Heat of formation + Delta-G solvation = -196.452176 kcal Electronic energy + Delta-G solvation = -28030.140716 eV Core-core repulsion = 24045.630855 eV Total energy + Delta-G solvation = -3984.509861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97986 -39.09603 -36.56072 -36.21873 -35.44932 -35.11937 -33.87666 -32.30744 -31.14601 -30.00862 -28.04533 -26.39395 -25.58279 -23.64791 -22.06448 -21.64372 -20.43072 -19.14735 -18.81074 -18.15449 -17.38948 -17.01337 -16.48707 -16.15840 -15.91699 -15.59974 -15.36845 -14.77864 -14.57683 -14.51696 -13.86811 -13.81385 -13.43075 -13.30392 -13.18514 -13.13309 -12.56357 -12.44200 -12.04838 -11.86905 -11.73028 -11.59779 -11.55047 -11.48024 -11.37325 -11.10620 -11.07198 -11.04733 -10.94511 -10.91262 -10.70948 -10.61329 -10.43473 -10.37389 -10.32109 -9.75856 -9.43658 -8.98840 -8.49209 -6.11200 -4.16744 0.82386 2.12362 2.90388 3.17780 3.26860 3.33041 3.35901 4.17012 4.17796 4.22774 4.33491 4.40082 4.68317 4.74400 4.78833 4.94395 5.08667 5.13268 5.23978 5.25384 5.29058 5.29842 5.33390 5.36878 5.48754 5.53291 5.60296 5.69618 5.72290 5.74917 5.83619 5.87747 5.91681 5.97596 6.06994 6.16041 6.19085 6.45139 6.50753 7.09915 7.31573 7.37914 7.79282 7.81705 8.18895 8.86603 9.47945 10.99902 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003359 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.168094 B = 8333.939892 C = 9463.364810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.123 4.123 5 C -0.104 4.104 6 C -0.054 4.054 7 C 0.115 3.885 8 N -1.130 6.130 9 S 2.591 3.409 10 O -0.969 6.969 11 O -0.965 6.965 12 C -0.589 4.589 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.104 4.104 23 C 0.477 3.523 24 O -0.501 6.501 25 O -0.521 6.521 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.409 0.591 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.411 0.589 45 H 0.070 0.930 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 22.612 11.463 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.161 4.161 5 C -0.142 4.142 6 C -0.055 4.055 7 C -0.011 4.011 8 N -0.888 5.888 9 S 2.689 3.311 10 O -0.959 6.959 11 O -0.955 6.955 12 C -0.722 4.722 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.141 4.141 23 C 0.319 3.681 24 O -0.388 6.388 25 O -0.333 6.333 26 C -0.151 4.151 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.243 0.757 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.089 0.911 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.383 22.269 10.987 25.061 hybrid contribution -0.661 -0.942 0.467 1.242 sum -4.044 21.327 11.454 24.544 Atomic orbital electron populations 1.21760 0.94864 1.02051 1.01532 1.22099 0.95489 0.98993 0.94998 0.90775 1.22507 0.96293 0.99835 0.97464 1.22167 0.96547 1.02943 0.92574 1.21216 0.94148 0.93658 0.96493 1.21686 1.03772 0.96610 0.79020 1.55865 1.80540 1.37197 1.15158 1.05575 0.76227 0.75751 0.73596 1.93549 1.87365 1.81768 1.33261 1.93551 1.37881 1.85848 1.78202 1.30433 1.14592 1.16409 1.10816 1.18961 0.97748 0.89009 0.95416 1.21002 1.11910 0.93175 1.29835 0.92049 1.25067 0.95458 0.99043 0.94912 1.69950 1.27470 1.24082 1.31370 0.86470 0.80414 0.81608 0.78798 1.20476 1.21007 1.19755 1.21527 0.87647 1.01357 1.03607 1.23405 0.87131 0.79272 0.78333 1.90716 1.86895 1.28566 1.32669 1.84504 1.18779 1.61332 1.68720 1.22591 0.93970 1.00655 0.97897 0.92405 0.92824 0.92647 0.91787 0.91273 0.90504 0.91582 0.91274 0.88513 0.75719 0.86317 0.86117 0.94880 0.94845 0.92536 0.87565 0.87421 0.73057 0.91083 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.29 37.16 0.35 -0.54 16 2 C -0.10 -0.62 3.48 -88.64 -0.31 -0.93 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.88 6.28 -25.07 -0.16 -1.03 16 5 C -0.10 -0.91 4.66 -25.61 -0.12 -1.03 16 6 C -0.05 -0.47 0.37 -153.39 -0.06 -0.53 16 7 C 0.12 1.35 4.35 -4.04 -0.02 1.33 16 8 N -1.13 -14.25 5.24 -10.61 -0.06 -14.31 16 9 S 2.59 46.69 5.46 -107.50 -0.59 46.10 16 10 O -0.97 -20.07 18.08 -57.54 -1.04 -21.11 16 11 O -0.96 -20.58 17.50 -57.54 -1.01 -21.59 16 12 C -0.59 -11.35 6.01 37.16 0.22 -11.13 16 13 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 14 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 C -0.10 -0.87 4.45 -27.88 -0.12 -0.99 16 23 C 0.48 5.23 7.46 36.01 0.27 5.49 16 24 O -0.50 -6.82 13.22 -18.75 -0.25 -7.07 16 25 O -0.52 -4.88 13.42 -39.25 -0.53 -5.41 16 26 C -0.11 -0.81 4.68 -25.09 -0.12 -0.93 16 27 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.51 8.02 -51.93 -0.42 0.09 16 32 H 0.08 0.76 7.67 -51.93 -0.40 0.37 16 33 H 0.07 0.59 6.77 -51.93 -0.35 0.24 16 34 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.10 1.39 5.56 -51.93 -0.29 1.10 16 36 H 0.41 4.13 7.35 -34.47 -0.25 3.88 16 37 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 38 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.11 0.84 7.03 -51.93 -0.36 0.47 16 43 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.41 2.41 9.10 45.56 0.41 2.83 16 45 H 0.07 0.42 7.84 -51.93 -0.41 0.02 16 46 H 0.08 0.62 7.73 -51.93 -0.40 0.22 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -37.19 380.26 -9.29 -46.47 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.65 Total: 3.79 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -0.61 Total: -22.95 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.68 Total: -40.27 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -2.82 Total: -55.17 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.59 Total: 46.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.19 -9.29 -46.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547900987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.977 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds