Wall clock time and date at job start Tue Mar 31 2020 17:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.67168 * 2 1 4 4 C 1.54886 * 110.91038 * 123.34265 * 2 1 3 5 5 C 1.54270 * 104.19290 * 156.33083 * 4 2 1 6 6 C 1.53876 * 106.59715 * 336.38899 * 5 4 2 7 7 C 1.53001 * 110.03169 * 240.71321 * 6 5 4 8 8 N 1.46501 * 109.47112 * 181.03497 * 7 6 5 9 9 S 1.65598 * 120.00195 * 165.49814 * 8 7 6 10 10 O 1.42099 * 104.27762 * 181.07040 * 9 8 7 11 11 O 1.42100 * 104.27842 * 308.93109 * 9 8 7 12 12 C 1.81404 * 104.44729 * 64.99993 * 9 8 7 13 13 C 1.53003 * 109.47025 * 179.97438 * 12 9 8 14 14 C 1.50697 * 109.47129 * 179.97438 * 13 12 9 15 15 H 1.08005 * 120.00166 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99842 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00552 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99831 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46828 * 90.00294 * 18 16 14 20 20 H 1.48491 * 109.47136 * 209.99979 * 18 16 14 21 21 H 1.48496 * 109.46946 * 330.00325 * 18 16 14 22 22 C 1.53003 * 110.07128 * 119.30762 * 6 5 4 23 23 C 1.50703 * 109.47003 * 59.72497 * 22 6 5 24 24 O 1.20823 * 120.00181 * 353.93145 * 23 22 6 25 25 O 1.34225 * 119.99875 * 173.93236 * 23 22 6 26 26 C 1.54262 * 106.59919 * 0.02562 * 6 5 4 27 27 H 1.08994 * 109.47267 * 183.23652 * 1 2 3 28 28 H 1.09001 * 109.46954 * 303.23727 * 1 2 3 29 29 H 1.09002 * 109.47135 * 63.23426 * 1 2 3 30 30 H 1.08998 * 110.48932 * 275.00555 * 4 2 1 31 31 H 1.09004 * 110.49129 * 37.65742 * 4 2 1 32 32 H 1.09001 * 110.03350 * 217.10695 * 5 4 2 33 33 H 1.09000 * 110.03522 * 95.67622 * 5 4 2 34 34 H 1.08999 * 109.46972 * 61.04195 * 7 6 5 35 35 H 1.08995 * 109.47313 * 301.03907 * 7 6 5 36 36 H 0.97005 * 119.99900 * 345.49846 * 8 7 6 37 37 H 1.08994 * 109.47083 * 300.00259 * 12 9 8 38 38 H 1.09006 * 109.47028 * 60.00470 * 12 9 8 39 39 H 1.09003 * 109.47313 * 300.00363 * 13 12 9 40 40 H 1.08996 * 109.46970 * 59.99855 * 13 12 9 41 41 H 0.96994 * 120.00777 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.47233 * 179.72191 * 22 6 5 43 43 H 1.08996 * 109.47311 * 299.72743 * 22 6 5 44 44 H 0.96704 * 117.00118 * 179.97438 * 25 23 22 45 45 H 1.09001 * 110.48766 * 142.29226 * 26 6 5 46 46 H 1.09004 * 110.48412 * 264.79798 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0828 -0.7953 1.2087 5 6 3.4974 -1.2223 0.7654 6 6 3.4948 -1.2214 -0.7733 7 6 3.8047 -2.6246 -1.2987 8 7 3.8236 -2.6044 -2.7635 9 16 4.4772 -3.8748 -3.6008 10 8 4.3452 -3.5004 -4.9652 11 8 5.7574 -4.0606 -3.0126 12 6 3.3911 -5.2763 -3.2173 13 6 3.8959 -6.5258 -3.9418 14 6 2.9941 -7.6902 -3.6228 15 1 2.1454 -7.5527 -2.9691 16 6 3.2517 -8.9308 -4.1663 17 7 4.2847 -9.0983 -4.9627 18 14 2.1333 -10.3741 -3.7714 19 1 1.0371 -10.4388 -4.7712 20 1 2.9175 -11.6343 -3.8145 21 1 1.5561 -10.1963 -2.4148 22 6 4.5296 -0.2248 -1.2995 23 6 5.8983 -0.6119 -0.8016 24 8 6.0199 -1.5175 -0.0111 25 8 6.9824 0.0495 -1.2363 26 6 2.0791 -0.7932 -1.2114 27 1 -0.3633 -1.0260 0.0580 28 1 -0.3633 0.5633 0.8596 29 1 -0.3633 0.4628 -0.9176 30 1 2.1358 -0.1589 2.0921 31 1 1.4639 -1.6709 1.4046 32 1 3.7194 -2.2224 1.1378 33 1 4.2358 -0.5123 1.1380 34 1 3.0380 -3.3188 -0.9549 35 1 4.7780 -2.9449 -0.9272 36 1 3.4531 -1.8468 -3.2429 37 1 3.3929 -5.4537 -2.1419 38 1 2.3768 -5.0507 -3.5468 39 1 3.8939 -6.3481 -5.0172 40 1 4.9103 -6.7516 -3.6129 41 1 4.4658 -9.9709 -5.3454 42 1 4.5231 -0.2356 -2.3894 43 1 4.2835 0.7759 -0.9446 44 1 7.8388 -0.2345 -0.8884 45 1 2.1293 -0.1559 -2.0943 46 1 1.4598 -1.6683 -1.4086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547900987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:53 Heat of formation + Delta-G solvation = -224.533013 kcal Electronic energy + Delta-G solvation = -28031.358393 eV Core-core repulsion = 24045.630855 eV Total energy + Delta-G solvation = -3985.727537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75591 -39.81407 -38.15974 -37.04478 -37.01001 -36.07339 -35.90262 -33.14908 -33.06009 -30.61618 -28.73949 -27.59962 -27.11846 -24.38566 -23.62077 -22.76946 -21.06037 -20.18624 -19.87818 -19.06769 -18.94783 -18.24285 -17.83259 -17.16369 -17.02971 -16.83654 -16.53188 -16.33513 -15.95655 -15.40361 -15.07023 -14.71399 -14.46796 -14.39077 -14.09477 -13.94425 -13.76460 -13.69712 -13.24117 -13.15990 -13.11846 -13.08601 -12.93311 -12.78891 -12.58366 -12.41169 -12.25298 -12.14659 -12.05722 -11.78258 -11.71926 -11.65414 -11.51416 -11.39682 -11.26308 -11.17867 -11.03532 -10.65302 -10.31624 -8.26527 -6.40768 -0.68093 1.31039 1.40416 1.42534 1.53640 1.84527 2.23941 2.37671 2.78806 3.06895 3.25583 3.51591 3.52737 3.68150 3.98346 4.07856 4.12278 4.24733 4.29599 4.42172 4.47151 4.52613 4.57565 4.68320 4.73925 4.77726 4.81158 4.86476 4.91161 5.02975 5.06915 5.20700 5.23444 5.26181 5.26862 5.28993 5.42089 5.46678 5.51941 5.67658 5.68093 5.73162 6.05313 6.15640 6.72870 7.04878 7.29526 8.85903 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003359 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.168094 B = 8333.939892 C = 9463.364810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.102 4.102 6 C -0.048 4.048 7 C 0.107 3.893 8 N -1.104 6.104 9 S 2.618 3.382 10 O -0.996 6.996 11 O -1.001 7.001 12 C -0.588 4.588 13 C 0.020 3.980 14 C -0.539 4.539 15 H 0.076 0.924 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.258 1.258 22 C -0.106 4.106 23 C 0.470 3.530 24 O -0.536 6.536 25 O -0.522 6.522 26 C -0.113 4.113 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.426 0.574 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.007 0.993 40 H 0.004 0.996 41 H 0.267 0.733 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.423 0.577 45 H 0.089 0.911 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 24.208 12.404 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.141 4.141 6 C -0.050 4.050 7 C -0.019 4.019 8 N -0.867 5.867 9 S 2.714 3.286 10 O -0.986 6.986 11 O -0.990 6.990 12 C -0.720 4.720 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.798 3.202 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.182 1.182 22 C -0.144 4.144 23 C 0.314 3.686 24 O -0.426 6.426 25 O -0.335 6.335 26 C -0.150 4.150 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.263 0.737 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.025 0.975 40 H 0.022 0.978 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.157 0.843 44 H 0.284 0.716 45 H 0.108 0.892 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.728 23.887 11.919 27.303 hybrid contribution 0.139 -1.361 0.216 1.385 sum -5.589 22.527 12.134 26.190 Atomic orbital electron populations 1.21750 0.94552 1.01810 1.02032 1.22080 0.95649 0.99322 0.93907 0.89474 1.22490 0.95039 1.00011 0.98251 1.22119 0.97580 1.01856 0.92514 1.21199 0.95534 0.91811 0.96417 1.21877 1.02951 0.99290 0.77749 1.55266 1.80063 1.35833 1.15577 1.04468 0.75394 0.75866 0.72834 1.93504 1.87596 1.82225 1.35313 1.93509 1.40129 1.86621 1.78770 1.30332 1.16091 1.14320 1.11287 1.18822 0.96479 0.92002 0.94615 1.21517 1.12450 0.94023 1.29806 0.90556 1.26131 0.97023 1.02500 0.94608 1.70099 1.29597 1.24983 1.32767 0.85301 0.78238 0.77316 0.79336 1.19442 1.20880 1.18153 1.21708 0.85899 1.02732 1.04025 1.24013 0.88245 0.78666 0.77715 1.90712 1.87465 1.30058 1.34339 1.84484 1.19443 1.61060 1.68546 1.22629 0.92347 1.01071 0.98988 0.93040 0.92378 0.92134 0.91045 0.91644 0.92406 0.91859 0.89879 0.91168 0.73679 0.84389 0.83546 0.97454 0.97807 0.92387 0.86749 0.84250 0.71630 0.89240 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.29 71.98 0.67 -0.67 16 2 C -0.09 -0.87 3.48 -9.51 -0.03 -0.90 16 3 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.12 -1.45 6.28 31.67 0.20 -1.25 16 5 C -0.10 -1.65 4.66 31.32 0.15 -1.51 16 6 C -0.05 -0.74 0.37 -51.46 -0.02 -0.76 16 7 C 0.11 2.38 4.35 86.38 0.38 2.76 16 8 N -1.10 -26.18 5.24 -187.49 -0.98 -27.16 16 9 S 2.62 94.28 5.46 -56.49 -0.31 93.97 16 10 O -1.00 -41.23 18.08 -127.65 -2.31 -43.54 16 11 O -1.00 -43.69 17.50 -127.65 -2.23 -45.92 16 12 C -0.59 -22.46 6.01 71.98 0.43 -22.03 16 13 C 0.02 1.05 4.98 29.85 0.15 1.20 16 14 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 15 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 16 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 18 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 C -0.11 -1.52 4.45 29.85 0.13 -1.39 16 23 C 0.47 9.88 7.46 71.24 0.53 10.41 16 24 O -0.54 -14.70 13.22 21.97 0.29 -14.41 16 25 O -0.52 -9.26 13.42 -51.37 -0.69 -9.94 16 26 C -0.11 -1.24 4.68 31.66 0.15 -1.09 16 27 H 0.05 0.55 8.10 -2.39 -0.02 0.53 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.84 8.02 -2.38 -0.02 0.82 16 32 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 33 H 0.06 1.06 6.77 -2.39 -0.02 1.04 16 34 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 35 H 0.07 2.02 5.56 -2.39 -0.01 2.01 16 36 H 0.43 7.51 7.35 -96.74 -0.71 6.80 16 37 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 38 H 0.15 4.78 8.14 -2.39 -0.02 4.76 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.11 1.47 7.03 -2.39 -0.02 1.46 16 43 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.42 4.79 9.10 -74.05 -0.67 4.12 16 45 H 0.09 0.69 7.84 -2.39 -0.02 0.67 16 46 H 0.08 0.95 7.73 -2.38 -0.02 0.93 16 Total: -1.00 -82.39 380.26 -0.89 -83.27 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.39 Total: 20.35 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 3.43 Total: -44.98 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -0.70 Total: -84.38 kcal Atomic # 8 Polarization: -108.88 SS G_CDS: -4.94 Total: -113.82 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 94.28 SS G_CDS: -0.31 Total: 93.97 kcal Total: -82.39 -0.89 -83.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547900987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.263 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds