Wall clock time and date at job start Tue Mar 31 2020 18:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47244 * 2 1 4 4 C 1.52994 * 109.47360 * 239.99703 * 2 1 3 5 5 C 1.50701 * 109.46886 * 65.00040 * 4 2 1 6 6 O 1.20824 * 120.00125 * 0.02562 * 5 4 2 7 7 O 1.34233 * 119.99784 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47163 * 119.99964 * 2 1 3 9 9 C 1.53044 * 109.45946 * 299.99906 * 8 2 1 10 10 C 1.53191 * 109.31440 * 178.61278 * 9 8 2 11 11 N 1.46926 * 108.89109 * 54.56430 * 10 9 8 12 12 S 1.65602 * 120.63116 * 126.46643 * 11 10 9 13 13 O 1.42094 * 104.28022 * 206.07250 * 12 11 10 14 14 O 1.42101 * 104.27558 * 333.92968 * 12 11 10 15 15 C 1.81399 * 104.44897 * 89.99836 * 12 11 10 16 16 C 1.53000 * 109.47282 * 180.02562 * 15 12 11 17 17 C 1.50697 * 109.47256 * 180.02562 * 16 15 12 18 18 H 1.07993 * 120.00161 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00322 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46938 * 89.99879 * 21 19 17 23 23 H 1.48495 * 109.47188 * 209.99945 * 21 19 17 24 24 H 1.48504 * 109.46961 * 330.00263 * 21 19 17 25 25 C 1.46957 * 118.71783 * 306.64359 * 11 10 9 26 26 C 1.53040 * 109.46011 * 179.97438 * 8 2 1 27 27 H 1.09006 * 109.47431 * 299.99827 * 1 2 3 28 28 H 1.09000 * 109.47361 * 60.00038 * 1 2 3 29 29 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47366 * 184.99778 * 4 2 1 31 31 H 1.09001 * 109.47576 * 305.00271 * 4 2 1 32 32 H 0.96707 * 116.99617 * 180.02562 * 7 5 4 33 33 H 1.08996 * 109.46122 * 59.97231 * 8 2 1 34 34 H 1.09003 * 109.49852 * 58.66542 * 9 8 2 35 35 H 1.09001 * 109.52587 * 298.58504 * 9 8 2 36 36 H 1.09002 * 109.58786 * 174.42474 * 10 9 8 37 37 H 1.08996 * 109.58870 * 294.70753 * 10 9 8 38 38 H 1.08996 * 109.47438 * 300.00379 * 15 12 11 39 39 H 1.08998 * 109.46957 * 60.00644 * 15 12 11 40 40 H 1.09004 * 109.47140 * 300.00847 * 16 15 12 41 41 H 1.09009 * 109.46881 * 59.99999 * 16 15 12 42 42 H 0.96998 * 119.99945 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.46843 * 293.57352 * 25 11 10 44 44 H 1.08997 * 109.71602 * 173.28846 * 25 11 10 45 45 H 1.08995 * 109.49643 * 301.33467 * 26 8 2 46 46 H 1.08994 * 109.49843 * 61.40226 * 26 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0570 -2.4765 6 8 1.0141 1.0835 -2.3637 7 8 1.9831 -0.3902 -3.6951 8 6 2.0400 -0.7213 1.2493 9 6 1.5297 0.0004 2.4987 10 6 2.0134 -0.7442 3.7470 11 7 3.4750 -0.8800 3.6834 12 16 4.4254 -0.3680 4.9392 13 8 5.6761 -0.0709 4.3337 14 8 3.6567 0.6478 5.5689 15 6 4.5693 -1.8187 6.0187 16 6 5.4347 -1.4686 7.2309 17 6 5.5548 -2.6740 8.1273 18 1 5.0634 -3.5975 7.8591 19 6 6.2919 -2.5977 9.2900 20 7 6.8899 -1.4729 9.6169 21 14 6.4414 -4.0920 10.4009 22 1 7.6248 -4.8930 9.9966 23 1 6.6017 -3.6481 11.8089 24 1 5.2166 -4.9230 10.2802 25 6 4.0772 -1.4754 2.4824 26 6 3.5704 -0.7217 1.2487 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 1.7053 0.1433 -4.4524 33 1 1.6762 -1.7487 1.2494 34 1 0.4399 0.0215 2.4871 35 1 1.9131 1.0207 2.5122 36 1 1.7372 -0.1810 4.6384 37 1 1.5558 -1.7328 3.7830 38 1 3.5777 -2.1207 6.3556 39 1 5.0307 -2.6378 5.4669 40 1 6.4264 -1.1662 6.8942 41 1 4.9729 -0.6496 7.7825 42 1 7.4088 -1.4193 10.4347 43 1 3.7899 -2.5246 2.4138 44 1 5.1630 -1.3968 2.5379 45 1 3.9337 -1.2148 0.3471 46 1 3.9345 0.3054 1.2735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548244960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:32 Heat of formation + Delta-G solvation = -190.530023 kcal Electronic energy + Delta-G solvation = -27242.421620 eV Core-core repulsion = 23258.168563 eV Total energy + Delta-G solvation = -3984.253057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.81904 -39.15187 -36.70572 -36.65662 -35.57781 -35.32943 -33.88669 -31.38928 -31.19792 -31.10375 -28.56974 -25.63503 -25.09437 -23.45973 -22.42228 -21.58895 -20.77017 -20.05383 -18.56905 -18.36920 -17.63766 -16.88127 -16.52737 -16.41026 -15.87071 -15.49803 -14.76111 -14.65687 -14.60326 -14.47633 -14.35054 -14.08763 -13.43997 -13.37757 -13.24178 -13.02994 -12.63140 -12.49818 -12.24649 -11.89296 -11.85432 -11.75643 -11.60496 -11.54415 -11.52292 -11.34939 -11.13244 -11.08536 -10.96441 -10.89217 -10.71129 -10.43517 -10.39774 -10.37922 -10.33731 -9.75916 -9.32371 -8.75185 -8.50928 -6.12909 -4.18527 0.76438 1.83665 2.66460 3.03828 3.25449 3.31690 3.34417 4.23292 4.28813 4.37006 4.41927 4.46178 4.58434 4.62721 4.82118 5.01262 5.04486 5.06997 5.12933 5.22132 5.24955 5.26488 5.29579 5.40062 5.57757 5.57794 5.61499 5.64893 5.73384 5.75942 5.76644 5.86512 5.92842 5.96232 6.05665 6.19758 6.22893 6.29440 6.49310 6.71184 7.29706 7.35754 7.51577 7.80045 8.17226 8.84912 9.46180 10.98086 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030989 B = 0.002243 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.323213 B =12479.597485 C =12562.228855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.076 4.076 3 H 0.081 0.919 4 C -0.114 4.114 5 C 0.477 3.523 6 O -0.512 6.512 7 O -0.521 6.521 8 C -0.080 4.080 9 C -0.127 4.127 10 C 0.118 3.882 11 N -1.006 6.006 12 S 2.590 3.410 13 O -0.965 6.965 14 O -0.964 6.964 15 C -0.589 4.589 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.118 3.882 26 C -0.132 4.132 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 -0.978 -23.903 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.095 4.095 3 H 0.100 0.900 4 C -0.152 4.152 5 C 0.320 3.680 6 O -0.400 6.400 7 O -0.333 6.333 8 C -0.098 4.098 9 C -0.166 4.166 10 C -0.008 4.008 11 N -0.843 5.843 12 S 2.689 3.311 13 O -0.955 6.955 14 O -0.955 6.955 15 C -0.722 4.722 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.007 4.007 26 C -0.171 4.171 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.267 0.733 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.940 0.048 -23.330 26.209 hybrid contribution -0.194 -1.108 0.207 1.144 sum -12.135 -1.060 -23.124 26.136 Atomic orbital electron populations 1.22036 0.94496 1.01729 1.03206 1.21050 0.96648 1.00091 0.91695 0.90011 1.21607 1.04425 1.00155 0.88997 1.23664 0.75627 0.83997 0.84739 1.90709 1.37439 1.24829 1.87022 1.84558 1.74943 1.56510 1.17281 1.21158 0.95318 0.99790 0.93577 1.21960 1.00845 1.00031 0.93748 1.21396 0.79376 1.00503 0.99481 1.57954 1.16193 1.78869 1.31295 1.05676 0.73390 0.77698 0.74304 1.93522 1.43117 1.83829 1.75067 1.93526 1.70624 1.54783 1.76553 1.30494 1.10112 1.17900 1.13741 1.18964 0.93830 0.98964 0.89381 1.21000 1.32228 0.96976 1.05726 0.92067 1.25080 0.95312 0.96346 0.97821 1.69955 1.32555 1.25435 1.24893 0.86464 0.78535 0.82470 0.79771 1.20462 1.21006 1.19775 1.21385 0.98884 0.96472 0.83984 1.22035 0.95299 1.01940 0.97824 0.91866 0.91342 0.92986 0.87131 0.87547 0.73261 0.90547 0.90461 0.91198 0.88731 0.91641 0.86330 0.86337 0.94910 0.94889 0.92524 0.91611 0.88713 0.90749 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.58 37.16 0.32 -0.85 16 2 C -0.08 -0.56 1.62 -90.62 -0.15 -0.71 16 3 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 4 C -0.11 -0.67 5.07 -27.89 -0.14 -0.81 16 5 C 0.48 3.62 8.05 36.01 0.29 3.91 16 6 O -0.51 -5.46 14.73 -18.75 -0.28 -5.74 16 7 O -0.52 -2.97 13.42 -39.26 -0.53 -3.50 16 8 C -0.08 -0.61 1.74 -90.58 -0.16 -0.76 16 9 C -0.13 -1.17 5.05 -26.61 -0.13 -1.30 16 10 C 0.12 1.28 6.43 -3.71 -0.02 1.26 16 11 N -1.01 -13.02 3.23 -113.50 -0.37 -13.38 16 12 S 2.59 46.09 5.45 -107.50 -0.59 45.51 16 13 O -0.96 -19.69 16.59 -57.54 -0.95 -20.64 16 14 O -0.96 -19.79 16.59 -57.54 -0.95 -20.74 16 15 C -0.59 -11.19 6.12 37.16 0.23 -10.96 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 17 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 C 0.12 1.24 6.42 -3.69 -0.02 1.22 16 26 C -0.13 -1.13 5.05 -26.61 -0.13 -1.26 16 27 H 0.06 0.47 6.40 -51.93 -0.33 0.13 16 28 H 0.07 0.61 5.96 -51.93 -0.31 0.30 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.11 0.54 6.14 -51.93 -0.32 0.22 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.41 0.78 9.10 45.56 0.41 1.20 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.59 6.36 -51.93 -0.33 0.26 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.13 6.86 -51.93 -0.36 0.78 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.09 6.87 -51.93 -0.36 0.74 16 45 H 0.07 0.46 6.25 -51.93 -0.32 0.13 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -36.77 375.34 -9.29 -46.06 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.52 Total: -0.74 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.48 Total: -22.86 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.37 Total: -39.13 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -2.71 Total: -50.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 46.09 SS G_CDS: -0.59 Total: 45.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.77 -9.29 -46.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548244960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.468 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds