Wall clock time and date at job start Tue Mar 31 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47244 * 2 1 4 4 C 1.52994 * 109.47360 * 239.99703 * 2 1 3 5 5 C 1.50701 * 109.46886 * 65.00040 * 4 2 1 6 6 O 1.20824 * 120.00125 * 0.02562 * 5 4 2 7 7 O 1.34233 * 119.99784 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47163 * 119.99964 * 2 1 3 9 9 C 1.53044 * 109.45946 * 299.99906 * 8 2 1 10 10 C 1.53191 * 109.31440 * 178.61278 * 9 8 2 11 11 N 1.46926 * 108.89109 * 54.56430 * 10 9 8 12 12 S 1.65602 * 120.63116 * 126.46643 * 11 10 9 13 13 O 1.42094 * 104.28022 * 206.07250 * 12 11 10 14 14 O 1.42101 * 104.27558 * 333.92968 * 12 11 10 15 15 C 1.81399 * 104.44897 * 89.99836 * 12 11 10 16 16 C 1.53000 * 109.47282 * 180.02562 * 15 12 11 17 17 C 1.50697 * 109.47256 * 180.02562 * 16 15 12 18 18 H 1.07993 * 120.00161 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00322 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46938 * 89.99879 * 21 19 17 23 23 H 1.48495 * 109.47188 * 209.99945 * 21 19 17 24 24 H 1.48504 * 109.46961 * 330.00263 * 21 19 17 25 25 C 1.46957 * 118.71783 * 306.64359 * 11 10 9 26 26 C 1.53040 * 109.46011 * 179.97438 * 8 2 1 27 27 H 1.09006 * 109.47431 * 299.99827 * 1 2 3 28 28 H 1.09000 * 109.47361 * 60.00038 * 1 2 3 29 29 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47366 * 184.99778 * 4 2 1 31 31 H 1.09001 * 109.47576 * 305.00271 * 4 2 1 32 32 H 0.96707 * 116.99617 * 180.02562 * 7 5 4 33 33 H 1.08996 * 109.46122 * 59.97231 * 8 2 1 34 34 H 1.09003 * 109.49852 * 58.66542 * 9 8 2 35 35 H 1.09001 * 109.52587 * 298.58504 * 9 8 2 36 36 H 1.09002 * 109.58786 * 174.42474 * 10 9 8 37 37 H 1.08996 * 109.58870 * 294.70753 * 10 9 8 38 38 H 1.08996 * 109.47438 * 300.00379 * 15 12 11 39 39 H 1.08998 * 109.46957 * 60.00644 * 15 12 11 40 40 H 1.09004 * 109.47140 * 300.00847 * 16 15 12 41 41 H 1.09009 * 109.46881 * 59.99999 * 16 15 12 42 42 H 0.96998 * 119.99945 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.46843 * 293.57352 * 25 11 10 44 44 H 1.08997 * 109.71602 * 173.28846 * 25 11 10 45 45 H 1.08995 * 109.49643 * 301.33467 * 26 8 2 46 46 H 1.08994 * 109.49843 * 61.40226 * 26 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0570 -2.4765 6 8 1.0141 1.0835 -2.3637 7 8 1.9831 -0.3902 -3.6951 8 6 2.0400 -0.7213 1.2493 9 6 1.5297 0.0004 2.4987 10 6 2.0134 -0.7442 3.7470 11 7 3.4750 -0.8800 3.6834 12 16 4.4254 -0.3680 4.9392 13 8 5.6761 -0.0709 4.3337 14 8 3.6567 0.6478 5.5689 15 6 4.5693 -1.8187 6.0187 16 6 5.4347 -1.4686 7.2309 17 6 5.5548 -2.6740 8.1273 18 1 5.0634 -3.5975 7.8591 19 6 6.2919 -2.5977 9.2900 20 7 6.8899 -1.4729 9.6169 21 14 6.4414 -4.0920 10.4009 22 1 7.6248 -4.8930 9.9966 23 1 6.6017 -3.6481 11.8089 24 1 5.2166 -4.9230 10.2802 25 6 4.0772 -1.4754 2.4824 26 6 3.5704 -0.7217 1.2487 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 1.7053 0.1433 -4.4524 33 1 1.6762 -1.7487 1.2494 34 1 0.4399 0.0215 2.4871 35 1 1.9131 1.0207 2.5122 36 1 1.7372 -0.1810 4.6384 37 1 1.5558 -1.7328 3.7830 38 1 3.5777 -2.1207 6.3556 39 1 5.0307 -2.6378 5.4669 40 1 6.4264 -1.1662 6.8942 41 1 4.9729 -0.6496 7.7825 42 1 7.4088 -1.4193 10.4347 43 1 3.7899 -2.5246 2.4138 44 1 5.1630 -1.3968 2.5379 45 1 3.9337 -1.2148 0.3471 46 1 3.9345 0.3054 1.2735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548244960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:31 Heat of formation + Delta-G solvation = -217.593700 kcal Electronic energy + Delta-G solvation = -27243.595189 eV Core-core repulsion = 23258.168563 eV Total energy + Delta-G solvation = -3985.426626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38428 -39.87011 -38.20522 -37.27974 -36.97921 -36.20853 -35.88538 -33.11662 -32.14095 -31.89779 -29.12746 -27.58487 -25.89413 -24.23235 -23.53766 -22.99435 -21.56201 -20.63935 -19.73539 -19.14798 -18.90736 -18.35446 -17.44299 -17.17640 -17.10102 -16.90298 -16.53275 -15.76136 -15.48236 -15.27009 -15.07538 -15.01513 -14.78408 -14.49458 -14.13328 -13.96455 -13.79767 -13.70916 -13.23363 -13.19816 -13.13722 -12.92702 -12.84409 -12.78392 -12.67483 -12.37473 -12.33175 -12.24291 -12.12371 -12.01243 -11.91599 -11.74809 -11.55595 -11.35610 -11.13846 -11.05922 -11.01301 -10.65029 -9.82204 -8.26053 -6.40454 -0.67776 1.29858 1.40953 1.43081 1.54217 1.80280 2.24875 2.38166 2.89505 3.07061 3.21110 3.66526 3.71310 3.80559 3.96509 4.07224 4.11133 4.27393 4.30670 4.34327 4.47528 4.57078 4.60653 4.66171 4.74522 4.76316 4.82033 4.91038 4.93112 4.95109 5.03241 5.09257 5.21195 5.26767 5.27272 5.27810 5.33465 5.39592 5.50101 5.63338 5.68162 5.76176 5.79623 6.06009 6.73439 7.06765 7.29800 8.86182 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030989 B = 0.002243 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.323213 B =12479.597485 C =12562.228855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 H 0.056 0.944 4 C -0.113 4.113 5 C 0.478 3.522 6 O -0.551 6.551 7 O -0.518 6.518 8 C -0.071 4.071 9 C -0.128 4.128 10 C 0.109 3.891 11 N -0.996 5.996 12 S 2.610 3.390 13 O -0.996 6.996 14 O -0.998 6.998 15 C -0.586 4.586 16 C 0.020 3.980 17 C -0.538 4.538 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.935 5.935 21 Si 0.976 3.024 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.257 1.257 25 C 0.107 3.893 26 C -0.132 4.132 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.424 0.576 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.004 0.996 41 H 0.003 0.997 42 H 0.267 0.733 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 -4.287 -25.489 29.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.150 4.150 5 C 0.323 3.677 6 O -0.442 6.442 7 O -0.332 6.332 8 C -0.090 4.090 9 C -0.167 4.167 10 C -0.015 4.015 11 N -0.836 5.836 12 S 2.709 3.291 13 O -0.987 6.987 14 O -0.988 6.988 15 C -0.718 4.718 16 C -0.019 4.019 17 C -0.577 4.577 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.799 3.201 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.180 1.180 25 C -0.017 4.017 26 C -0.171 4.171 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.285 0.715 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.293 -3.277 -24.936 28.448 hybrid contribution 0.189 -0.028 0.568 0.599 sum -13.104 -3.306 -24.369 27.865 Atomic orbital electron populations 1.21996 0.94515 1.02550 1.02121 1.20933 0.96552 0.99011 0.92538 0.92537 1.21668 1.05330 1.00707 0.87264 1.24021 0.74674 0.83422 0.85610 1.90707 1.39360 1.26592 1.87584 1.84524 1.74544 1.56662 1.17448 1.21119 0.94448 1.00911 0.92507 1.21990 1.01974 0.98745 0.93958 1.21697 0.77746 1.02442 0.99639 1.57573 1.16819 1.78870 1.30317 1.04723 0.72900 0.76984 0.74521 1.93474 1.45277 1.84261 1.75642 1.93476 1.71224 1.56228 1.77910 1.30386 1.10065 1.19590 1.11770 1.18822 0.93495 0.97811 0.91784 1.21518 1.32005 0.97977 1.06166 0.90508 1.26165 0.94888 0.99665 0.99769 1.70110 1.33653 1.28062 1.25663 0.85284 0.79261 0.78378 0.77150 1.19516 1.20934 1.18037 1.21751 0.98225 0.98530 0.83229 1.22078 0.96062 1.00763 0.98165 0.92262 0.93164 0.91113 0.85738 0.84933 0.71499 0.87770 0.88538 0.93639 0.90441 0.88177 0.84153 0.84001 0.97751 0.97818 0.92410 0.88021 0.90153 0.87529 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.58 71.98 0.62 -1.38 16 2 C -0.07 -0.90 1.62 -10.80 -0.02 -0.92 16 3 H 0.06 1.00 7.96 -2.39 -0.02 0.98 16 4 C -0.11 -0.97 5.07 29.85 0.15 -0.82 16 5 C 0.48 6.43 8.05 71.24 0.57 7.01 16 6 O -0.55 -11.56 14.73 21.97 0.32 -11.24 16 7 O -0.52 -4.79 13.42 -51.44 -0.69 -5.48 16 8 C -0.07 -0.85 1.74 -10.76 -0.02 -0.87 16 9 C -0.13 -2.11 5.05 30.67 0.15 -1.96 16 10 C 0.11 2.13 6.43 86.36 0.55 2.69 16 11 N -1.00 -24.23 3.23 -512.99 -1.66 -25.88 16 12 S 2.61 94.22 5.45 -56.49 -0.31 93.92 16 13 O -1.00 -41.85 16.59 -127.65 -2.12 -43.97 16 14 O -1.00 -42.43 16.59 -127.65 -2.12 -44.55 16 15 C -0.59 -22.04 6.12 71.98 0.44 -21.60 16 16 C 0.02 1.04 4.98 29.85 0.15 1.19 16 17 C -0.54 -29.82 9.11 25.60 0.23 -29.58 16 18 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 19 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 20 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 21 Si 0.98 43.16 29.54 68.60 2.03 45.18 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 25 C 0.11 1.96 6.42 86.36 0.55 2.51 16 26 C -0.13 -1.90 5.05 30.67 0.15 -1.74 16 27 H 0.06 0.79 6.40 -2.38 -0.02 0.77 16 28 H 0.05 0.86 5.96 -2.39 -0.01 0.84 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 0.74 6.14 -2.39 -0.01 0.72 16 31 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.42 0.92 9.10 -74.05 -0.67 0.25 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 1.23 6.36 -2.39 -0.02 1.22 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.80 6.86 -2.39 -0.02 1.79 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 39 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 40 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.74 6.87 -2.39 -0.02 1.72 16 45 H 0.11 0.87 6.25 -2.39 -0.01 0.85 16 46 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -83.53 375.34 0.07 -83.46 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.31 Total: 10.93 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 4.01 Total: -45.38 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.37 Total: -82.87 kcal Atomic # 8 Polarization: -100.64 SS G_CDS: -4.60 Total: -105.24 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 94.22 SS G_CDS: -0.31 Total: 93.92 kcal Total: -83.53 0.07 -83.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548244960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.136 kcal (2) G-P(sol) polarization free energy of solvation -83.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds