Wall clock time and date at job start Tue Mar 31 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46834 * 2 1 4 4 C 1.53000 * 109.46982 * 119.99779 * 2 1 3 5 5 C 1.50700 * 109.47279 * 295.00122 * 4 2 1 6 6 O 1.20829 * 119.99879 * 0.02562 * 5 4 2 7 7 O 1.34228 * 119.99750 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47182 * 240.00337 * 2 1 3 9 9 C 1.53039 * 109.45889 * 179.97438 * 8 2 1 10 10 C 1.53196 * 109.33748 * 178.60961 * 9 8 2 11 11 N 1.46995 * 108.73708 * 54.62190 * 10 9 8 12 12 S 1.65600 * 120.61359 * 126.38974 * 11 10 9 13 13 O 1.42104 * 104.27770 * 26.08843 * 12 11 10 14 14 O 1.42095 * 104.27821 * 153.94636 * 12 11 10 15 15 C 1.81398 * 104.44925 * 270.01857 * 12 11 10 16 16 C 1.52998 * 109.47303 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.47056 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00566 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99842 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99948 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47513 * 89.99571 * 21 19 17 23 23 H 1.48501 * 109.47077 * 209.99765 * 21 19 17 24 24 H 1.48506 * 109.47117 * 329.99594 * 21 19 17 25 25 C 1.46925 * 118.75597 * 306.40484 * 11 10 9 26 26 C 1.53042 * 109.45090 * 59.93216 * 8 2 1 27 27 H 1.08998 * 109.47290 * 60.00177 * 1 2 3 28 28 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47443 * 299.99895 * 1 2 3 30 30 H 1.08995 * 109.47164 * 55.00519 * 4 2 1 31 31 H 1.09006 * 109.46295 * 175.00163 * 4 2 1 32 32 H 0.96698 * 116.99650 * 180.02562 * 7 5 4 33 33 H 1.09006 * 109.45654 * 299.97169 * 8 2 1 34 34 H 1.09002 * 109.49756 * 298.57684 * 9 8 2 35 35 H 1.09000 * 109.49883 * 58.64427 * 9 8 2 36 36 H 1.09001 * 109.58261 * 174.43824 * 10 9 8 37 37 H 1.08996 * 109.58319 * 294.86146 * 10 9 8 38 38 H 1.08996 * 109.47202 * 299.99986 * 15 12 11 39 39 H 1.09004 * 109.46826 * 60.00136 * 15 12 11 40 40 H 1.08996 * 109.47188 * 300.00249 * 16 15 12 41 41 H 1.09006 * 109.46502 * 60.00014 * 16 15 12 42 42 H 0.97000 * 119.99659 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.58683 * 293.82929 * 25 11 10 44 44 H 1.08993 * 109.58510 * 173.40005 * 25 11 10 45 45 H 1.08992 * 109.50305 * 301.33391 * 26 8 2 46 46 H 1.08998 * 109.49487 * 61.40001 * 26 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0831 2.3637 7 8 1.9839 -0.3895 3.6951 8 6 2.0400 -0.7212 -1.2493 9 6 3.5704 -0.7204 -1.2493 10 6 4.0780 -1.4732 -2.4832 11 7 3.4736 -0.8758 -3.6826 12 16 4.4229 -0.3596 -4.9374 13 8 5.5966 -1.1547 -4.8391 14 8 3.5754 -0.4421 -6.0750 15 6 4.7923 1.3720 -4.5430 16 6 5.6750 1.9682 -5.6413 17 6 5.9813 3.4069 -5.3139 18 1 5.5864 3.8515 -4.4124 19 6 6.7658 4.1557 -6.1653 20 7 7.0327 5.4114 -5.8798 21 14 7.4483 3.3870 -7.7250 22 1 6.4854 3.5864 -8.8376 23 1 8.7420 4.0301 -8.0687 24 1 7.6604 1.9332 -7.5085 25 6 2.0116 -0.7450 -3.7469 26 6 1.5282 -0.0003 -2.4985 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6054 -1.7197 1.2952 31 1 3.1264 -0.7993 1.2055 32 1 1.7054 0.1435 4.4523 33 1 1.6770 -1.7490 -1.2488 34 1 3.9337 0.3069 -1.2749 35 1 3.9345 -1.2127 -0.3475 36 1 5.1634 -1.3910 -2.5404 37 1 3.7921 -2.5228 -2.4141 38 1 3.8621 1.9362 -4.4777 39 1 5.3162 1.4234 -3.5885 40 1 6.6052 1.4039 -5.7062 41 1 5.1514 1.9167 -6.5960 42 1 7.5843 5.9383 -6.4790 43 1 1.5573 -1.7353 -3.7809 44 1 1.7340 -0.1826 -4.6383 45 1 0.4386 0.0197 -2.4863 46 1 1.9107 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548244961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:35 Heat of formation + Delta-G solvation = -186.355118 kcal Electronic energy + Delta-G solvation = -27624.658424 eV Core-core repulsion = 23640.586405 eV Total energy + Delta-G solvation = -3984.072020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78415 -39.18705 -36.79495 -36.67949 -35.65421 -35.41750 -33.94414 -31.48360 -31.43902 -31.15868 -28.55606 -25.99441 -25.14498 -23.47620 -22.41763 -21.41163 -20.54911 -20.01151 -18.71925 -18.39139 -17.76725 -17.04150 -16.72554 -16.40048 -16.01662 -15.59588 -14.79759 -14.66778 -14.61256 -14.38652 -14.28786 -14.11204 -13.61390 -13.42215 -13.25422 -13.05168 -12.80737 -12.61438 -12.29807 -11.91279 -11.90567 -11.83586 -11.72349 -11.60306 -11.56576 -11.36390 -11.25772 -11.23251 -11.19020 -10.91637 -10.68342 -10.49701 -10.42836 -10.40351 -10.12942 -9.71304 -9.41632 -8.85443 -8.66499 -6.16728 -4.17923 0.63760 1.87980 2.70098 2.90070 3.26293 3.33658 3.37789 4.18429 4.23762 4.35624 4.39050 4.43646 4.48543 4.57772 4.81656 4.98223 4.99422 5.03779 5.13425 5.15077 5.22856 5.25744 5.28268 5.38557 5.50194 5.52300 5.56822 5.61597 5.64064 5.68018 5.72632 5.85459 5.92749 5.94911 6.06817 6.15647 6.21672 6.27073 6.31078 6.61814 6.81826 6.94119 7.54776 7.55836 8.36547 8.84554 9.42992 10.95675 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.002987 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.674708 B = 9371.324155 C =10402.961148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 H 0.084 0.916 4 C -0.114 4.114 5 C 0.476 3.524 6 O -0.510 6.510 7 O -0.521 6.521 8 C -0.078 4.078 9 C -0.140 4.140 10 C 0.123 3.877 11 N -1.005 6.005 12 S 2.588 3.412 13 O -0.965 6.965 14 O -0.965 6.965 15 C -0.582 4.582 16 C -0.007 4.007 17 C -0.519 4.519 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.123 3.877 26 C -0.134 4.134 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.409 0.591 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 -15.650 16.170 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.096 4.096 3 H 0.102 0.898 4 C -0.151 4.151 5 C 0.319 3.681 6 O -0.398 6.398 7 O -0.333 6.333 8 C -0.096 4.096 9 C -0.179 4.179 10 C -0.002 4.002 11 N -0.841 5.841 12 S 2.686 3.314 13 O -0.955 6.955 14 O -0.955 6.955 15 C -0.715 4.715 16 C -0.046 4.046 17 C -0.558 4.558 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.695 3.305 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.186 1.186 25 C -0.003 4.003 26 C -0.173 4.173 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.268 0.732 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.482 -16.030 14.988 25.246 hybrid contribution 0.142 0.735 0.258 0.792 sum -12.340 -15.294 15.246 24.872 Atomic orbital electron populations 1.22034 0.94511 1.01638 1.03286 1.21064 0.96650 1.00236 0.91632 0.89791 1.21597 1.04402 1.00083 0.89062 1.23645 0.75703 0.84016 0.84737 1.90719 1.37349 1.24768 1.86999 1.84548 1.74917 1.56582 1.17296 1.21120 0.95183 0.99734 0.93589 1.22153 0.95562 1.02104 0.98038 1.21366 0.98391 0.96916 0.83564 1.57928 1.15919 1.76220 1.34055 1.05734 0.73582 0.78497 0.73540 1.93538 1.49019 1.67043 1.85904 1.93537 1.66676 1.87296 1.47989 1.30347 1.10381 1.20346 1.10461 1.19403 0.94098 0.99162 0.91941 1.20849 1.32374 0.92872 1.09704 0.90442 1.24991 0.95511 0.94697 0.97925 1.69882 1.38076 1.07580 1.37811 0.86926 0.79134 0.80444 0.83953 1.19668 1.20759 1.18620 1.21373 0.79184 1.00998 0.98708 1.22076 1.01153 1.00174 0.93930 0.91848 0.93079 0.91292 0.87646 0.87144 0.73226 0.90646 0.90775 0.90601 0.89007 0.91330 0.85762 0.85767 0.95023 0.95472 0.92385 0.91370 0.89018 0.90325 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.58 37.16 0.32 -0.87 16 2 C -0.08 -0.57 1.62 -90.62 -0.15 -0.71 16 3 H 0.08 0.77 7.96 -51.92 -0.41 0.35 16 4 C -0.11 -0.68 5.07 -27.88 -0.14 -0.82 16 5 C 0.48 3.78 8.05 36.01 0.29 4.07 16 6 O -0.51 -5.70 14.73 -18.75 -0.28 -5.98 16 7 O -0.52 -3.16 13.42 -39.25 -0.53 -3.68 16 8 C -0.08 -0.56 1.74 -90.58 -0.16 -0.71 16 9 C -0.14 -1.09 5.05 -26.61 -0.13 -1.22 16 10 C 0.12 1.23 6.32 -3.67 -0.02 1.20 16 11 N -1.00 -12.33 3.22 -113.47 -0.37 -12.70 16 12 S 2.59 43.53 5.41 -107.50 -0.58 42.95 16 13 O -0.96 -18.60 16.73 -57.54 -0.96 -19.56 16 14 O -0.96 -18.64 16.72 -57.54 -0.96 -19.60 16 15 C -0.58 -10.56 6.12 37.16 0.23 -10.33 16 16 C -0.01 -0.16 4.05 -27.89 -0.11 -0.27 16 17 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 21 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 25 C 0.12 1.26 6.32 -3.71 -0.02 1.24 16 26 C -0.13 -1.13 5.04 -26.61 -0.13 -1.27 16 27 H 0.06 0.47 6.40 -51.93 -0.33 0.14 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.64 5.96 -51.93 -0.31 0.33 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.54 6.15 -51.93 -0.32 0.22 16 32 H 0.41 0.96 9.10 45.56 0.41 1.37 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.43 6.25 -51.93 -0.32 0.10 16 36 H 0.09 0.98 7.10 -51.93 -0.37 0.61 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 39 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 40 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 41 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.01 7.10 -51.93 -0.37 0.65 16 45 H 0.08 0.56 6.36 -51.93 -0.33 0.23 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -36.79 372.21 -8.94 -45.73 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.51 Total: -0.73 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -0.47 Total: -22.55 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.41 Total: -39.02 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.73 Total: -48.83 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.58 Total: 42.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.79 -8.94 -45.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548244961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.625 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds