Wall clock time and date at job start Tue Mar 31 2020 18:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46834 * 2 1 4 4 C 1.53000 * 109.46982 * 119.99779 * 2 1 3 5 5 C 1.50700 * 109.47279 * 295.00122 * 4 2 1 6 6 O 1.20829 * 119.99879 * 0.02562 * 5 4 2 7 7 O 1.34228 * 119.99750 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47182 * 240.00337 * 2 1 3 9 9 C 1.53039 * 109.45889 * 179.97438 * 8 2 1 10 10 C 1.53196 * 109.33748 * 178.60961 * 9 8 2 11 11 N 1.46995 * 108.73708 * 54.62190 * 10 9 8 12 12 S 1.65600 * 120.61359 * 126.38974 * 11 10 9 13 13 O 1.42104 * 104.27770 * 26.08843 * 12 11 10 14 14 O 1.42095 * 104.27821 * 153.94636 * 12 11 10 15 15 C 1.81398 * 104.44925 * 270.01857 * 12 11 10 16 16 C 1.52998 * 109.47303 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.47056 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00566 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99842 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99948 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47513 * 89.99571 * 21 19 17 23 23 H 1.48501 * 109.47077 * 209.99765 * 21 19 17 24 24 H 1.48506 * 109.47117 * 329.99594 * 21 19 17 25 25 C 1.46925 * 118.75597 * 306.40484 * 11 10 9 26 26 C 1.53042 * 109.45090 * 59.93216 * 8 2 1 27 27 H 1.08998 * 109.47290 * 60.00177 * 1 2 3 28 28 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47443 * 299.99895 * 1 2 3 30 30 H 1.08995 * 109.47164 * 55.00519 * 4 2 1 31 31 H 1.09006 * 109.46295 * 175.00163 * 4 2 1 32 32 H 0.96698 * 116.99650 * 180.02562 * 7 5 4 33 33 H 1.09006 * 109.45654 * 299.97169 * 8 2 1 34 34 H 1.09002 * 109.49756 * 298.57684 * 9 8 2 35 35 H 1.09000 * 109.49883 * 58.64427 * 9 8 2 36 36 H 1.09001 * 109.58261 * 174.43824 * 10 9 8 37 37 H 1.08996 * 109.58319 * 294.86146 * 10 9 8 38 38 H 1.08996 * 109.47202 * 299.99986 * 15 12 11 39 39 H 1.09004 * 109.46826 * 60.00136 * 15 12 11 40 40 H 1.08996 * 109.47188 * 300.00249 * 16 15 12 41 41 H 1.09006 * 109.46502 * 60.00014 * 16 15 12 42 42 H 0.97000 * 119.99659 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.58683 * 293.82929 * 25 11 10 44 44 H 1.08993 * 109.58510 * 173.40005 * 25 11 10 45 45 H 1.08992 * 109.50305 * 301.33391 * 26 8 2 46 46 H 1.08998 * 109.49487 * 61.40001 * 26 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0831 2.3637 7 8 1.9839 -0.3895 3.6951 8 6 2.0400 -0.7212 -1.2493 9 6 3.5704 -0.7204 -1.2493 10 6 4.0780 -1.4732 -2.4832 11 7 3.4736 -0.8758 -3.6826 12 16 4.4229 -0.3596 -4.9374 13 8 5.5966 -1.1547 -4.8391 14 8 3.5754 -0.4421 -6.0750 15 6 4.7923 1.3720 -4.5430 16 6 5.6750 1.9682 -5.6413 17 6 5.9813 3.4069 -5.3139 18 1 5.5864 3.8515 -4.4124 19 6 6.7658 4.1557 -6.1653 20 7 7.0327 5.4114 -5.8798 21 14 7.4483 3.3870 -7.7250 22 1 6.4854 3.5864 -8.8376 23 1 8.7420 4.0301 -8.0687 24 1 7.6604 1.9332 -7.5085 25 6 2.0116 -0.7450 -3.7469 26 6 1.5282 -0.0003 -2.4985 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6054 -1.7197 1.2952 31 1 3.1264 -0.7993 1.2055 32 1 1.7054 0.1435 4.4523 33 1 1.6770 -1.7490 -1.2488 34 1 3.9337 0.3069 -1.2749 35 1 3.9345 -1.2127 -0.3475 36 1 5.1634 -1.3910 -2.5404 37 1 3.7921 -2.5228 -2.4141 38 1 3.8621 1.9362 -4.4777 39 1 5.3162 1.4234 -3.5885 40 1 6.6052 1.4039 -5.7062 41 1 5.1514 1.9167 -6.5960 42 1 7.5843 5.9383 -6.4790 43 1 1.5573 -1.7353 -3.7809 44 1 1.7340 -0.1826 -4.6383 45 1 0.4386 0.0197 -2.4863 46 1 1.9107 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548244961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:34 Heat of formation + Delta-G solvation = -213.611978 kcal Electronic energy + Delta-G solvation = -27625.840371 eV Core-core repulsion = 23640.586405 eV Total energy + Delta-G solvation = -3985.253966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.37609 -39.87978 -38.23169 -37.27630 -37.02519 -36.21186 -35.89592 -33.47811 -32.15460 -31.87608 -29.12192 -27.89792 -25.89482 -24.20609 -23.31892 -22.87809 -21.41938 -20.61004 -19.88902 -19.38210 -18.97930 -18.50868 -17.45548 -17.24910 -17.09195 -16.91041 -16.41215 -15.75664 -15.47908 -15.29542 -15.19406 -14.99648 -14.84953 -14.75302 -14.16622 -13.94697 -13.82353 -13.77468 -13.27668 -13.23026 -13.16088 -13.07753 -12.96198 -12.80181 -12.66781 -12.36529 -12.35172 -12.24329 -12.05279 -11.96835 -11.90227 -11.74100 -11.58026 -11.31194 -11.28939 -11.05189 -10.98276 -10.85712 -9.85260 -8.37780 -6.43708 -0.71272 1.30811 1.31163 1.32619 1.43128 1.72931 2.25826 2.28528 2.82148 2.96030 3.17303 3.65395 3.71069 3.80770 3.92770 3.99817 4.04572 4.26899 4.29733 4.33178 4.46698 4.55197 4.57316 4.61643 4.66917 4.74785 4.82028 4.91404 4.94072 4.94409 5.04029 5.05041 5.10248 5.11128 5.23028 5.29259 5.35326 5.39268 5.46643 5.50890 5.64941 5.75998 5.77511 6.15630 6.62229 7.07411 7.20725 8.77905 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.002987 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.674708 B = 9371.324155 C =10402.961148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.073 4.073 3 H 0.058 0.942 4 C -0.113 4.113 5 C 0.477 3.523 6 O -0.552 6.552 7 O -0.519 6.519 8 C -0.070 4.070 9 C -0.139 4.139 10 C 0.113 3.887 11 N -0.995 5.995 12 S 2.616 3.384 13 O -0.988 6.988 14 O -0.989 6.989 15 C -0.590 4.590 16 C -0.015 4.015 17 C -0.528 4.528 18 H 0.047 0.953 19 C 0.013 3.987 20 N -0.940 5.940 21 Si 0.926 3.074 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.249 1.249 25 C 0.116 3.884 26 C -0.134 4.134 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.424 0.576 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.270 0.730 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 -18.651 16.736 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.149 4.149 5 C 0.321 3.679 6 O -0.443 6.443 7 O -0.332 6.332 8 C -0.089 4.089 9 C -0.177 4.177 10 C -0.011 4.011 11 N -0.835 5.835 12 S 2.713 3.287 13 O -0.978 6.978 14 O -0.979 6.979 15 C -0.721 4.721 16 C -0.054 4.054 17 C -0.567 4.567 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.580 5.580 21 Si 0.749 3.251 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.173 1.173 25 C -0.009 4.009 26 C -0.173 4.173 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.285 0.715 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.110 -19.024 15.576 27.864 hybrid contribution 0.257 1.665 0.249 1.703 sum -12.853 -17.360 15.826 26.777 Atomic orbital electron populations 1.21997 0.94677 1.02424 1.02130 1.20951 0.96450 0.99149 0.92585 0.92352 1.21674 1.05370 1.00613 0.87286 1.24060 0.74707 0.83441 0.85645 1.90716 1.39343 1.26616 1.87579 1.84517 1.74511 1.56719 1.17469 1.21083 0.94616 1.00658 0.92526 1.22183 0.96021 1.01335 0.98204 1.21687 0.98016 0.98391 0.83004 1.57624 1.16471 1.75403 1.33966 1.04647 0.73152 0.77146 0.73790 1.93502 1.50703 1.67029 1.86558 1.93500 1.67166 1.87221 1.50046 1.30376 1.09970 1.22588 1.09173 1.19351 0.95289 0.96844 0.93965 1.21176 1.31768 0.95183 1.08549 0.93496 1.25896 0.96048 0.95136 1.01484 1.70013 1.39380 1.09149 1.39450 0.86007 0.78925 0.80244 0.79961 1.18510 1.19809 1.17254 1.21630 0.77648 1.02449 0.99160 1.22091 1.02126 0.99246 0.93867 0.92174 0.91236 0.93314 0.85054 0.85654 0.71522 0.88275 0.92275 0.87705 0.89892 0.88828 0.84826 0.84656 0.95023 0.95264 0.92102 0.88993 0.90152 0.88728 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.58 71.98 0.62 -1.45 16 2 C -0.07 -0.92 1.62 -10.79 -0.02 -0.93 16 3 H 0.06 1.05 7.96 -2.38 -0.02 1.03 16 4 C -0.11 -1.01 5.07 29.85 0.15 -0.86 16 5 C 0.48 6.86 8.05 71.24 0.57 7.43 16 6 O -0.55 -12.25 14.73 21.95 0.32 -11.92 16 7 O -0.52 -5.28 13.42 -51.40 -0.69 -5.97 16 8 C -0.07 -0.79 1.74 -10.77 -0.02 -0.81 16 9 C -0.14 -1.76 5.05 30.67 0.15 -1.61 16 10 C 0.11 1.93 6.32 86.35 0.55 2.48 16 11 N -1.00 -22.40 3.22 -512.90 -1.65 -24.06 16 12 S 2.62 85.35 5.41 -56.49 -0.31 85.04 16 13 O -0.99 -36.91 16.73 -127.65 -2.14 -39.05 16 14 O -0.99 -37.27 16.72 -127.65 -2.13 -39.40 16 15 C -0.59 -21.43 6.12 71.98 0.44 -20.99 16 16 C -0.02 -0.74 4.05 29.85 0.12 -0.62 16 17 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 18 H 0.05 2.88 7.99 -2.91 -0.02 2.85 16 19 C 0.01 0.75 5.47 84.66 0.46 1.22 16 20 N -0.94 -58.32 13.96 21.45 0.30 -58.02 16 21 Si 0.93 44.19 27.47 68.60 1.88 46.07 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 25 C 0.12 2.11 6.32 86.36 0.55 2.65 16 26 C -0.13 -1.99 5.04 30.67 0.15 -1.84 16 27 H 0.06 0.81 6.40 -2.39 -0.02 0.80 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.87 5.96 -2.39 -0.01 0.86 16 30 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 0.77 6.15 -2.38 -0.01 0.76 16 32 H 0.42 1.38 9.10 -74.06 -0.67 0.71 16 33 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.75 6.25 -2.39 -0.01 0.74 16 36 H 0.08 1.59 7.10 -2.39 -0.02 1.58 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 39 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 40 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 41 H 0.03 1.36 7.57 -2.38 -0.02 1.34 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.67 7.10 -2.39 -0.02 1.65 16 45 H 0.09 1.12 6.36 -2.39 -0.02 1.10 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -81.14 372.21 -0.17 -81.31 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.26 Total: 11.29 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 3.98 Total: -45.30 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -1.35 Total: -82.08 kcal Atomic # 8 Polarization: -91.70 SS G_CDS: -4.64 Total: -96.34 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Atomic # 16 Polarization: 85.35 SS G_CDS: -0.31 Total: 85.04 kcal Total: -81.14 -0.17 -81.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548244961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.300 kcal (2) G-P(sol) polarization free energy of solvation -81.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds