Wall clock time and date at job start Tue Mar 31 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47379 * 2 1 4 4 C 1.53000 * 109.47194 * 239.99778 * 2 1 3 5 5 C 1.50690 * 109.47368 * 64.99931 * 4 2 1 6 6 O 1.20829 * 119.99934 * 0.02562 * 5 4 2 7 7 O 1.34227 * 120.00084 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47046 * 119.99677 * 2 1 3 9 9 H 1.08998 * 109.49973 * 59.93524 * 8 2 1 10 10 C 1.53042 * 109.50066 * 179.97438 * 8 2 1 11 11 C 1.53039 * 109.54198 * 181.31673 * 10 8 2 12 12 C 1.53196 * 109.33748 * 298.62051 * 11 10 8 13 13 N 1.46995 * 108.73708 * 54.62190 * 12 11 10 14 14 S 1.65600 * 120.61359 * 126.38974 * 13 12 11 15 15 O 1.42104 * 104.27770 * 26.08843 * 14 13 12 16 16 O 1.42095 * 104.27821 * 153.94636 * 14 13 12 17 17 C 1.81398 * 104.44925 * 270.01857 * 14 13 12 18 18 C 1.52998 * 109.47303 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47056 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00566 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99816 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99810 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00045 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47004 * 59.99988 * 23 21 19 25 25 H 1.48498 * 109.47058 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47091 * 300.00078 * 23 21 19 27 27 C 1.46925 * 118.75597 * 306.40484 * 13 12 11 28 28 H 1.09000 * 109.47135 * 60.00737 * 1 2 3 29 29 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47749 * 300.00201 * 1 2 3 31 31 H 1.09001 * 109.46879 * 185.00321 * 4 2 1 32 32 H 1.08998 * 109.47026 * 304.99587 * 4 2 1 33 33 H 0.96709 * 116.99922 * 179.97438 * 7 5 4 34 34 H 1.09006 * 109.45643 * 61.29307 * 10 8 2 35 35 H 1.08997 * 109.46149 * 301.33933 * 10 8 2 36 36 H 1.09002 * 109.49756 * 58.58775 * 11 10 8 37 37 H 1.09000 * 109.49883 * 178.65518 * 11 10 8 38 38 H 1.09001 * 109.58261 * 174.43824 * 12 11 10 39 39 H 1.08996 * 109.58319 * 294.86146 * 12 11 10 40 40 H 1.08996 * 109.47202 * 299.99986 * 17 14 13 41 41 H 1.09004 * 109.46826 * 60.00136 * 17 14 13 42 42 H 1.08996 * 109.47188 * 300.00249 * 18 17 14 43 43 H 1.09006 * 109.46502 * 60.00014 * 18 17 14 44 44 H 0.96997 * 119.99773 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.58683 * 293.82929 * 27 13 12 46 46 H 1.08993 * 109.58510 * 173.40005 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0568 -2.4765 6 8 1.0140 1.0834 -2.3637 7 8 1.9840 -0.3898 -3.6951 8 6 2.0399 -0.7212 1.2493 9 1 1.6759 -1.7486 1.2504 10 6 3.5703 -0.7221 1.2496 11 6 4.0815 -1.4718 2.4820 12 6 3.5987 -0.7561 3.7476 13 7 2.1362 -0.6220 3.6855 14 16 1.1860 -1.1660 4.9279 15 8 2.0333 -1.1103 6.0674 16 8 0.0131 -0.3679 4.8474 17 6 0.8154 -2.8878 4.4939 18 6 -0.0670 -3.5087 5.5787 19 6 -0.3754 -4.9389 5.2177 20 1 0.0189 -5.3629 4.3061 21 6 -1.1610 -5.7063 6.0515 22 7 -1.6416 -5.1898 7.1614 23 14 -1.5427 -7.4794 5.6045 24 1 -0.2758 -8.2468 5.4986 25 1 -2.4003 -8.0815 6.6567 26 1 -2.2559 -7.5191 4.3025 27 6 1.5334 0.0033 2.5005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7199 -1.2950 33 1 1.7055 0.1432 -4.4524 34 1 3.9340 0.3052 1.2727 35 1 3.9334 -1.2154 0.3480 36 1 3.6978 -2.4921 2.4723 37 1 5.1712 -1.4927 2.4691 38 1 3.8761 -1.3395 4.6256 39 1 4.0542 0.2325 3.8044 40 1 0.2919 -2.9171 3.5384 41 1 1.7454 -3.4511 4.4161 42 1 0.4569 -3.4794 6.5340 43 1 -0.9970 -2.9454 5.6568 44 1 -2.1940 -5.7297 7.7481 45 1 1.8205 1.0539 2.4557 46 1 0.4480 -0.0790 2.5562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548574198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:23 Heat of formation + Delta-G solvation = -191.096178 kcal Electronic energy + Delta-G solvation = -27820.735979 eV Core-core repulsion = 23836.458372 eV Total energy + Delta-G solvation = -3984.277607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76335 -39.14786 -36.70926 -36.60585 -35.48961 -35.28407 -33.89132 -32.19979 -31.15691 -30.43501 -28.42949 -25.62370 -24.57053 -24.28278 -22.12562 -21.71688 -20.61357 -19.92570 -18.55356 -18.33331 -17.60342 -16.97037 -16.54208 -16.32302 -15.93371 -15.45548 -14.89038 -14.67141 -14.55772 -14.45635 -14.07754 -13.89136 -13.62576 -13.40362 -13.25672 -12.80171 -12.69641 -12.53109 -12.25029 -11.88861 -11.76219 -11.69455 -11.58516 -11.57631 -11.42800 -11.28224 -11.12864 -11.07415 -10.97346 -10.88395 -10.78838 -10.48809 -10.38950 -10.37483 -10.33542 -9.74452 -9.31433 -8.75219 -8.50654 -6.12828 -4.18571 0.76179 1.89537 2.70644 3.03175 3.26259 3.31286 3.32881 4.23830 4.30988 4.39096 4.40862 4.48096 4.64795 4.72280 4.77192 4.90515 5.04265 5.10462 5.18154 5.22171 5.25978 5.32388 5.35439 5.42951 5.54775 5.60373 5.66558 5.71075 5.74604 5.77853 5.80183 5.90250 5.91121 6.05411 6.11338 6.22007 6.23464 6.31834 6.49187 6.69263 7.29579 7.35824 7.57361 7.79750 8.17117 8.84577 9.46082 10.98180 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.003270 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.913752 B = 8561.083016 C = 9795.777871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 H 0.083 0.917 4 C -0.114 4.114 5 C 0.477 3.523 6 O -0.511 6.511 7 O -0.521 6.521 8 C -0.102 4.102 9 H 0.083 0.917 10 C -0.115 4.115 11 C -0.137 4.137 12 C 0.121 3.879 13 N -1.006 6.006 14 S 2.589 3.411 15 O -0.965 6.965 16 O -0.964 6.964 17 C -0.589 4.589 18 C 0.029 3.971 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.128 3.872 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.409 0.591 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.266 0.734 45 H 0.069 0.931 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.754 9.694 -18.882 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.092 4.092 3 H 0.101 0.899 4 C -0.151 4.151 5 C 0.320 3.680 6 O -0.399 6.399 7 O -0.333 6.333 8 C -0.122 4.122 9 H 0.101 0.899 10 C -0.152 4.152 11 C -0.176 4.176 12 C -0.004 4.004 13 N -0.842 5.842 14 S 2.688 3.312 15 O -0.955 6.955 16 O -0.954 6.954 17 C -0.722 4.722 18 C -0.010 4.010 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C 0.002 3.998 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.267 0.733 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.346 10.281 -17.570 23.305 hybrid contribution -0.334 -1.205 -1.224 1.750 sum 11.012 9.076 -18.794 23.598 Atomic orbital electron populations 1.22098 0.94144 1.02410 1.03555 1.20983 0.96961 0.99844 0.91405 0.89864 1.21585 1.04215 1.00374 0.88938 1.23635 0.75670 0.83973 0.84716 1.90713 1.37322 1.24847 1.87014 1.84555 1.74863 1.56614 1.17280 1.21642 0.96063 1.00748 0.93746 0.89860 1.21618 0.94704 1.00940 0.97974 1.21953 1.00725 1.00123 0.94811 1.21378 0.79393 1.01107 0.98568 1.58000 1.15895 1.75043 1.35219 1.05745 0.73489 0.78444 0.73505 1.93532 1.66756 1.87529 1.47679 1.93533 1.48987 1.67000 1.85920 1.30497 1.10397 1.20221 1.11108 1.18950 0.93640 0.97339 0.91113 1.20960 1.32049 0.95540 1.07451 0.92125 1.25071 0.95605 0.98881 0.94911 1.69946 1.34005 1.37020 1.11871 0.86535 0.78407 0.84175 0.78178 1.20080 1.21065 1.20087 1.21422 0.98532 0.96614 0.83232 0.91095 0.92492 0.91564 0.87265 0.87356 0.73272 0.91667 0.91579 0.91084 0.90823 0.89070 0.91458 0.86357 0.86346 0.94930 0.94918 0.92462 0.91276 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 8.59 37.15 0.32 -1.26 16 2 C -0.07 -0.59 1.62 -90.63 -0.15 -0.73 16 3 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 4 C -0.11 -0.74 5.07 -27.89 -0.14 -0.89 16 5 C 0.48 3.87 8.05 36.00 0.29 4.16 16 6 O -0.51 -5.68 14.73 -18.75 -0.28 -5.96 16 7 O -0.52 -3.22 13.42 -39.25 -0.53 -3.75 16 8 C -0.10 -0.88 1.92 -90.50 -0.17 -1.05 16 9 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 10 C -0.11 -0.83 4.86 -26.69 -0.13 -0.96 16 11 C -0.14 -1.14 6.08 -26.61 -0.16 -1.30 16 12 C 0.12 1.32 6.32 -3.67 -0.02 1.30 16 13 N -1.01 -13.27 3.22 -113.47 -0.37 -13.64 16 14 S 2.59 46.58 5.41 -107.50 -0.58 46.00 16 15 O -0.96 -19.95 16.73 -57.54 -0.96 -20.91 16 16 O -0.96 -19.97 16.72 -57.54 -0.96 -20.93 16 17 C -0.59 -11.11 6.12 37.16 0.23 -10.89 16 18 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 19 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.63 5.46 -17.81 -0.10 1.53 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.13 1.44 5.08 -3.71 -0.02 1.42 16 28 H 0.07 0.75 5.96 -51.93 -0.31 0.44 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 31 H 0.11 0.54 6.15 -51.93 -0.32 0.22 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.41 0.96 9.10 45.56 0.41 1.38 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.37 6.25 -51.93 -0.32 0.05 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.06 7.10 -51.93 -0.37 0.69 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.16 5.72 -51.93 -0.30 0.86 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -36.50 376.18 -9.37 -45.87 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.57 Total: -0.02 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.51 Total: -22.68 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.37 Total: -39.34 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -2.73 Total: -51.54 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 46.58 SS G_CDS: -0.58 Total: 46.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.50 -9.37 -45.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548574198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.223 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds