Wall clock time and date at job start Tue Mar 31 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47379 * 2 1 4 4 C 1.53000 * 109.47194 * 239.99778 * 2 1 3 5 5 C 1.50690 * 109.47368 * 64.99931 * 4 2 1 6 6 O 1.20829 * 119.99934 * 0.02562 * 5 4 2 7 7 O 1.34227 * 120.00084 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47046 * 119.99677 * 2 1 3 9 9 H 1.08998 * 109.49973 * 59.93524 * 8 2 1 10 10 C 1.53042 * 109.50066 * 179.97438 * 8 2 1 11 11 C 1.53039 * 109.54198 * 181.31673 * 10 8 2 12 12 C 1.53196 * 109.33748 * 298.62051 * 11 10 8 13 13 N 1.46995 * 108.73708 * 54.62190 * 12 11 10 14 14 S 1.65600 * 120.61359 * 126.38974 * 13 12 11 15 15 O 1.42104 * 104.27770 * 26.08843 * 14 13 12 16 16 O 1.42095 * 104.27821 * 153.94636 * 14 13 12 17 17 C 1.81398 * 104.44925 * 270.01857 * 14 13 12 18 18 C 1.52998 * 109.47303 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47056 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00566 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99816 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99810 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00045 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47004 * 59.99988 * 23 21 19 25 25 H 1.48498 * 109.47058 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47091 * 300.00078 * 23 21 19 27 27 C 1.46925 * 118.75597 * 306.40484 * 13 12 11 28 28 H 1.09000 * 109.47135 * 60.00737 * 1 2 3 29 29 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47749 * 300.00201 * 1 2 3 31 31 H 1.09001 * 109.46879 * 185.00321 * 4 2 1 32 32 H 1.08998 * 109.47026 * 304.99587 * 4 2 1 33 33 H 0.96709 * 116.99922 * 179.97438 * 7 5 4 34 34 H 1.09006 * 109.45643 * 61.29307 * 10 8 2 35 35 H 1.08997 * 109.46149 * 301.33933 * 10 8 2 36 36 H 1.09002 * 109.49756 * 58.58775 * 11 10 8 37 37 H 1.09000 * 109.49883 * 178.65518 * 11 10 8 38 38 H 1.09001 * 109.58261 * 174.43824 * 12 11 10 39 39 H 1.08996 * 109.58319 * 294.86146 * 12 11 10 40 40 H 1.08996 * 109.47202 * 299.99986 * 17 14 13 41 41 H 1.09004 * 109.46826 * 60.00136 * 17 14 13 42 42 H 1.08996 * 109.47188 * 300.00249 * 18 17 14 43 43 H 1.09006 * 109.46502 * 60.00014 * 18 17 14 44 44 H 0.96997 * 119.99773 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.58683 * 293.82929 * 27 13 12 46 46 H 1.08993 * 109.58510 * 173.40005 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0568 -2.4765 6 8 1.0140 1.0834 -2.3637 7 8 1.9840 -0.3898 -3.6951 8 6 2.0399 -0.7212 1.2493 9 1 1.6759 -1.7486 1.2504 10 6 3.5703 -0.7221 1.2496 11 6 4.0815 -1.4718 2.4820 12 6 3.5987 -0.7561 3.7476 13 7 2.1362 -0.6220 3.6855 14 16 1.1860 -1.1660 4.9279 15 8 2.0333 -1.1103 6.0674 16 8 0.0131 -0.3679 4.8474 17 6 0.8154 -2.8878 4.4939 18 6 -0.0670 -3.5087 5.5787 19 6 -0.3754 -4.9389 5.2177 20 1 0.0189 -5.3629 4.3061 21 6 -1.1610 -5.7063 6.0515 22 7 -1.6416 -5.1898 7.1614 23 14 -1.5427 -7.4794 5.6045 24 1 -0.2758 -8.2468 5.4986 25 1 -2.4003 -8.0815 6.6567 26 1 -2.2559 -7.5191 4.3025 27 6 1.5334 0.0033 2.5005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7199 -1.2950 33 1 1.7055 0.1432 -4.4524 34 1 3.9340 0.3052 1.2727 35 1 3.9334 -1.2154 0.3480 36 1 3.6978 -2.4921 2.4723 37 1 5.1712 -1.4927 2.4691 38 1 3.8761 -1.3395 4.6256 39 1 4.0542 0.2325 3.8044 40 1 0.2919 -2.9171 3.5384 41 1 1.7454 -3.4511 4.4161 42 1 0.4569 -3.4794 6.5340 43 1 -0.9970 -2.9454 5.6568 44 1 -2.1940 -5.7297 7.7481 45 1 1.8205 1.0539 2.4557 46 1 0.4480 -0.0790 2.5562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548574198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:21 Heat of formation + Delta-G solvation = -217.736117 kcal Electronic energy + Delta-G solvation = -27821.891174 eV Core-core repulsion = 23836.458372 eV Total energy + Delta-G solvation = -3985.432802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.37127 -39.89881 -38.23558 -37.24134 -37.01326 -36.10339 -35.88491 -33.12632 -32.98811 -31.15050 -29.10653 -27.59596 -25.43492 -25.06572 -23.53504 -22.74635 -21.45895 -20.57745 -19.80403 -19.13408 -18.90300 -18.31916 -17.63803 -17.19761 -17.05178 -16.89454 -16.53292 -15.86609 -15.47318 -15.28177 -15.05403 -14.77790 -14.74094 -14.46068 -14.37217 -14.00105 -13.73215 -13.50242 -13.45230 -13.19589 -13.18257 -12.96478 -12.89854 -12.79747 -12.67274 -12.35987 -12.28187 -12.23086 -12.16016 -12.04247 -11.80643 -11.72894 -11.56713 -11.48819 -11.25626 -11.04971 -10.94480 -10.63650 -9.84157 -8.25410 -6.39836 -0.70128 1.32046 1.41210 1.44848 1.52994 1.74340 2.26514 2.38609 2.86551 3.07804 3.17484 3.56863 3.74450 3.89459 3.94194 4.08958 4.10070 4.13439 4.23863 4.38248 4.42542 4.54176 4.63431 4.68641 4.71417 4.75550 4.76708 4.84598 4.92111 4.96232 5.07794 5.14763 5.17888 5.26798 5.27232 5.31916 5.37807 5.41484 5.45514 5.61761 5.68497 5.71911 5.78785 6.06330 6.73781 7.09173 7.30438 8.86742 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.003270 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.913752 B = 8561.083016 C = 9795.777871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.066 4.066 3 H 0.079 0.921 4 C -0.111 4.111 5 C 0.480 3.520 6 O -0.549 6.549 7 O -0.518 6.518 8 C -0.095 4.095 9 H 0.086 0.914 10 C -0.112 4.112 11 C -0.133 4.133 12 C 0.109 3.891 13 N -0.994 5.994 14 S 2.608 3.392 15 O -0.995 6.995 16 O -0.997 6.997 17 C -0.584 4.584 18 C 0.022 3.978 19 C -0.538 4.538 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.936 5.936 23 Si 0.974 3.026 24 H -0.261 1.261 25 H -0.285 1.285 26 H -0.262 1.262 27 C 0.118 3.882 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.424 0.576 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.267 0.733 45 H 0.079 0.921 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.860 8.446 -21.724 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.085 4.085 3 H 0.097 0.903 4 C -0.148 4.148 5 C 0.324 3.676 6 O -0.440 6.440 7 O -0.332 6.332 8 C -0.115 4.115 9 H 0.104 0.896 10 C -0.150 4.150 11 C -0.172 4.172 12 C -0.015 4.015 13 N -0.833 5.833 14 S 2.707 3.293 15 O -0.986 6.986 16 O -0.987 6.987 17 C -0.716 4.716 18 C -0.017 4.017 19 C -0.577 4.577 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.798 3.202 24 H -0.186 1.186 25 H -0.211 1.211 26 H -0.187 1.187 27 C -0.007 4.007 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.286 0.714 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.465 9.021 -20.440 26.086 hybrid contribution -0.955 -0.716 -0.393 1.257 sum 12.510 8.304 -20.833 25.681 Atomic orbital electron populations 1.22094 0.95714 1.02192 1.02360 1.20865 0.95572 0.99920 0.92124 0.90264 1.21617 1.05707 1.00252 0.87236 1.23914 0.74733 0.83367 0.85539 1.90712 1.39132 1.26589 1.87562 1.84519 1.74453 1.56774 1.17431 1.21587 0.97431 1.00340 0.92176 0.89611 1.21651 0.93065 1.01676 0.98567 1.21965 1.02121 0.99626 0.93498 1.21712 0.77470 1.02357 0.99985 1.57596 1.16617 1.74365 1.34685 1.04840 0.72955 0.77759 0.73787 1.93484 1.67335 1.87731 1.50024 1.93484 1.51012 1.67586 1.86652 1.30374 1.10390 1.21200 1.09675 1.18802 0.93365 0.97337 0.92216 1.21489 1.31812 0.96466 1.07959 0.90436 1.26144 0.95412 1.04056 0.94693 1.70105 1.35058 1.39047 1.13311 0.85360 0.78676 0.78035 0.78169 1.18593 1.21099 1.18706 1.21674 0.97887 0.97575 0.83574 0.92273 0.92216 0.92775 0.84764 0.86046 0.71436 0.90919 0.88906 0.91251 0.88468 0.90136 0.90003 0.84182 0.84006 0.97764 0.97866 0.92413 0.90232 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 8.59 71.98 0.62 -2.46 16 2 C -0.07 -0.92 1.62 -10.80 -0.02 -0.94 16 3 H 0.08 1.20 7.96 -2.39 -0.02 1.18 16 4 C -0.11 -1.09 5.07 29.85 0.15 -0.94 16 5 C 0.48 6.73 8.05 71.23 0.57 7.30 16 6 O -0.55 -11.68 14.73 21.96 0.32 -11.35 16 7 O -0.52 -5.07 13.42 -51.39 -0.69 -5.76 16 8 C -0.10 -1.39 1.92 -10.72 -0.02 -1.41 16 9 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 10 C -0.11 -1.16 4.86 30.62 0.15 -1.01 16 11 C -0.13 -1.71 6.08 30.67 0.19 -1.53 16 12 C 0.11 2.15 6.32 86.35 0.55 2.69 16 13 N -0.99 -25.15 3.22 -512.90 -1.65 -26.80 16 14 S 2.61 95.45 5.41 -56.49 -0.31 95.15 16 15 O -1.00 -42.22 16.73 -127.65 -2.14 -44.36 16 16 O -1.00 -42.77 16.72 -127.65 -2.13 -44.91 16 17 C -0.58 -22.00 6.12 71.98 0.44 -21.56 16 18 C 0.02 1.14 4.98 29.85 0.15 1.29 16 19 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 20 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 21 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 22 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 23 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 C 0.12 2.51 5.08 86.36 0.44 2.95 16 28 H 0.06 1.24 5.96 -2.39 -0.01 1.23 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.10 6.57 -2.39 -0.02 1.09 16 31 H 0.13 0.67 6.15 -2.39 -0.01 0.65 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.42 1.09 9.10 -74.05 -0.67 0.42 16 34 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 35 H 0.09 0.53 6.25 -2.39 -0.01 0.51 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.78 7.10 -2.39 -0.02 1.76 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 41 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 42 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 44 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.95 5.72 -2.39 -0.01 1.94 16 Total: -1.00 -81.70 376.18 -0.06 -81.77 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.31 Total: 13.06 kcal Atomic # 6 Polarization: -48.76 SS G_CDS: 3.91 Total: -44.85 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.37 Total: -83.70 kcal Atomic # 8 Polarization: -101.74 SS G_CDS: -4.64 Total: -106.38 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 95.45 SS G_CDS: -0.31 Total: 95.15 kcal Total: -81.70 -0.06 -81.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548574198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.968 kcal (2) G-P(sol) polarization free energy of solvation -81.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds