Wall clock time and date at job start Tue Mar 31 2020 18:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47439 * 2 1 4 4 C 1.53000 * 109.47012 * 239.99589 * 2 1 3 5 5 C 1.50706 * 109.46999 * 65.00052 * 4 2 1 6 6 O 1.20825 * 119.99775 * 0.02562 * 5 4 2 7 7 O 1.34221 * 120.00021 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47147 * 120.00209 * 2 1 3 9 9 H 1.09002 * 109.52633 * 60.07616 * 8 2 1 10 10 C 1.53038 * 109.49833 * 299.99588 * 8 2 1 11 11 C 1.53035 * 109.54175 * 178.68412 * 10 8 2 12 12 C 1.53191 * 109.31327 * 61.36680 * 11 10 8 13 13 N 1.46926 * 108.89109 * 305.29292 * 12 11 10 14 14 S 1.65599 * 120.63319 * 233.67818 * 13 12 11 15 15 O 1.42091 * 104.27938 * 206.07226 * 14 13 12 16 16 O 1.42103 * 104.27680 * 333.93371 * 14 13 12 17 17 C 1.81410 * 104.44552 * 90.00141 * 14 13 12 18 18 C 1.53001 * 109.46577 * 179.97438 * 17 14 13 19 19 C 1.50705 * 109.46674 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99977 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99708 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00568 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99624 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46718 * 90.00604 * 23 21 19 25 25 H 1.48499 * 109.46822 * 210.00401 * 23 21 19 26 26 H 1.48492 * 109.47081 * 330.00241 * 23 21 19 27 27 C 1.47207 * 118.55531 * 53.54119 * 13 12 11 28 28 H 1.08996 * 109.47071 * 59.99954 * 1 2 3 29 29 H 1.09002 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46924 * 299.99847 * 1 2 3 31 31 H 1.09002 * 109.47439 * 185.00130 * 4 2 1 32 32 H 1.09001 * 109.47156 * 305.00368 * 4 2 1 33 33 H 0.96703 * 117.00363 * 180.02562 * 7 5 4 34 34 H 1.09003 * 109.46001 * 58.65745 * 10 8 2 35 35 H 1.09005 * 109.44940 * 298.70023 * 10 8 2 36 36 H 1.09003 * 109.49576 * 301.41349 * 11 10 8 37 37 H 1.09000 * 109.52700 * 181.33397 * 11 10 8 38 38 H 1.09002 * 109.58786 * 65.15336 * 12 11 10 39 39 H 1.08996 * 109.58870 * 185.43616 * 12 11 10 40 40 H 1.09000 * 109.47101 * 299.99864 * 17 14 13 41 41 H 1.08998 * 109.46988 * 60.00396 * 17 14 13 42 42 H 1.08996 * 109.47657 * 300.00116 * 18 17 14 43 43 H 1.09007 * 109.47203 * 60.00614 * 18 17 14 44 44 H 0.96996 * 120.00609 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.53610 * 186.67231 * 27 13 12 46 46 H 1.09002 * 109.68003 * 66.36699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6412 0.0569 -2.4766 6 8 1.0140 1.0834 -2.3637 7 8 1.9838 -0.3897 -3.6951 8 6 2.0400 -0.7213 1.2492 9 1 1.6782 -1.7496 1.2494 10 6 1.5303 -0.0003 2.4992 11 6 2.0126 -0.7399 3.7492 12 6 3.5442 -0.7370 3.7802 13 7 4.0466 -1.2984 2.5188 14 16 5.1209 -2.5586 2.5247 15 8 5.8251 -2.4246 1.2979 16 8 5.7923 -2.4410 3.7716 17 6 4.0777 -4.0426 2.5010 18 6 4.9645 -5.2894 2.5039 19 6 4.0979 -6.5222 2.4849 20 1 3.0223 -6.4260 2.4716 21 6 4.6783 -7.7728 2.4833 22 7 5.9881 -7.8900 2.4990 23 14 3.6040 -9.3010 2.4590 24 1 3.3372 -9.6960 1.0526 25 1 4.3024 -10.4081 3.1602 26 1 2.3188 -9.0134 3.1449 27 6 3.5719 -0.7182 1.2519 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1263 -0.7996 -1.2056 32 1 1.6053 -1.7199 -1.2951 33 1 1.7060 0.1437 -4.4524 34 1 0.4405 0.0205 2.4874 35 1 1.9128 1.0203 2.5109 36 1 1.6511 -1.7680 3.7258 37 1 1.6298 -0.2398 4.6388 38 1 3.9055 0.2850 3.8948 39 1 3.8940 -1.3439 4.6152 40 1 3.4366 -4.0502 3.3825 41 1 3.4603 -4.0384 1.6027 42 1 5.6053 -5.2816 1.6222 43 1 5.5822 -5.2938 3.4020 44 1 6.3964 -8.7699 2.4983 45 1 3.9400 -1.3148 0.4172 46 1 3.9354 0.3051 1.1578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548574201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:31 Heat of formation + Delta-G solvation = -217.301841 kcal Electronic energy + Delta-G solvation = -27945.242996 eV Core-core repulsion = 23959.829026 eV Total energy + Delta-G solvation = -3985.413970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.39360 -39.89718 -38.22230 -37.26765 -37.00062 -36.09801 -35.87123 -33.11837 -33.03874 -31.01510 -29.22865 -27.58125 -25.65926 -24.59265 -23.59606 -23.02807 -21.32242 -20.60903 -19.80798 -19.16143 -18.90620 -18.31561 -17.51574 -17.27824 -17.04174 -16.89750 -16.51958 -15.91779 -15.56441 -15.24008 -14.96687 -14.89221 -14.66170 -14.47957 -14.37166 -13.96513 -13.71354 -13.70698 -13.31525 -13.19861 -13.16582 -12.96019 -12.91830 -12.77512 -12.60297 -12.35578 -12.24542 -12.23195 -12.12449 -12.07080 -11.79385 -11.72405 -11.56524 -11.52445 -11.23953 -11.11039 -10.93605 -10.63325 -9.83592 -8.24454 -6.38469 -0.69140 1.27604 1.42162 1.43767 1.54791 1.75603 2.23448 2.39241 2.87708 3.09069 3.17899 3.58723 3.73202 3.82650 4.00739 4.05689 4.13139 4.16467 4.20400 4.30959 4.43539 4.56532 4.60225 4.66369 4.69952 4.77455 4.79140 4.85777 4.91204 4.96386 5.06498 5.14871 5.17759 5.27368 5.28840 5.29219 5.35771 5.41081 5.52264 5.60595 5.69908 5.70514 5.76293 6.07758 6.75309 7.06709 7.31870 8.87797 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.003542 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.005133 B = 7902.395952 C = 9024.329949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.064 4.064 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.484 3.516 6 O -0.543 6.543 7 O -0.520 6.520 8 C -0.095 4.095 9 H 0.085 0.915 10 C -0.108 4.108 11 C -0.133 4.133 12 C 0.111 3.889 13 N -0.994 5.994 14 S 2.609 3.391 15 O -0.993 6.993 16 O -0.997 6.997 17 C -0.585 4.585 18 C 0.021 3.979 19 C -0.536 4.536 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.972 3.028 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.257 1.257 27 C 0.113 3.887 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.425 0.575 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.006 0.994 43 H 0.003 0.997 44 H 0.267 0.733 45 H 0.087 0.913 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 18.433 -4.860 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 H 0.098 0.902 4 C -0.165 4.165 5 C 0.328 3.672 6 O -0.434 6.434 7 O -0.333 6.333 8 C -0.115 4.115 9 H 0.104 0.896 10 C -0.146 4.146 11 C -0.172 4.172 12 C -0.014 4.014 13 N -0.833 5.833 14 S 2.708 3.292 15 O -0.983 6.983 16 O -0.987 6.987 17 C -0.717 4.717 18 C -0.018 4.018 19 C -0.575 4.575 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.796 3.204 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.181 1.181 27 C -0.012 4.012 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.286 0.714 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.826 18.485 -4.476 22.940 hybrid contribution -0.521 -0.931 -0.622 1.235 sum -13.347 17.554 -5.098 22.634 Atomic orbital electron populations 1.21977 0.94036 1.02195 1.02740 1.20890 0.96880 0.99528 0.91060 0.90220 1.21772 1.05051 1.00969 0.88738 1.23738 0.74733 0.83350 0.85345 1.90680 1.39060 1.26094 1.87528 1.84549 1.74480 1.56773 1.17542 1.21593 0.93674 1.01251 0.94997 0.89632 1.21560 1.01519 0.99126 0.92365 1.21958 0.93611 1.02042 0.99583 1.21653 0.95644 1.00253 0.83833 1.57654 1.63899 1.48681 1.13061 1.04822 0.75652 0.76020 0.72727 1.93483 1.71502 1.86159 1.47194 1.93486 1.72897 1.86365 1.45937 1.30389 1.14157 1.15021 1.12183 1.18817 0.94588 0.92227 0.96179 1.21507 0.93906 0.90767 1.51341 0.90533 1.26103 0.96421 1.03209 0.94418 1.70101 1.11316 1.25081 1.50975 0.85334 0.78749 0.77674 0.78636 1.19561 1.21001 1.18097 1.21835 0.95003 1.00297 0.84041 0.92707 0.92274 0.91155 0.86580 0.86011 0.71354 0.89890 0.91094 0.91391 0.88757 0.89965 0.90152 0.84257 0.83930 0.97597 0.97835 0.92436 0.89525 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.58 71.98 0.62 -1.50 16 2 C -0.06 -0.90 1.62 -10.79 -0.02 -0.92 16 3 H 0.08 1.20 7.95 -2.39 -0.02 1.18 16 4 C -0.13 -1.85 5.08 29.85 0.15 -1.70 16 5 C 0.48 8.26 8.05 71.24 0.57 8.83 16 6 O -0.54 -11.91 14.73 21.97 0.32 -11.59 16 7 O -0.52 -7.29 13.42 -51.33 -0.69 -7.97 16 8 C -0.10 -1.39 1.92 -10.72 -0.02 -1.41 16 9 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 10 C -0.11 -1.34 4.85 30.62 0.15 -1.20 16 11 C -0.13 -1.89 6.08 30.67 0.19 -1.70 16 12 C 0.11 2.20 6.31 86.36 0.54 2.74 16 13 N -0.99 -24.26 3.23 -512.40 -1.66 -25.92 16 14 S 2.61 92.36 5.42 -56.49 -0.31 92.05 16 15 O -0.99 -40.52 16.75 -127.65 -2.14 -42.66 16 16 O -1.00 -41.58 16.72 -127.65 -2.13 -43.71 16 17 C -0.59 -21.50 6.12 71.98 0.44 -21.06 16 18 C 0.02 1.07 4.98 29.85 0.15 1.22 16 19 C -0.54 -29.22 9.11 25.60 0.23 -28.99 16 20 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 21 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 22 N -0.94 -56.56 13.29 21.45 0.28 -56.27 16 23 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 C 0.11 2.20 5.09 86.31 0.44 2.64 16 28 H 0.05 0.96 5.96 -2.39 -0.01 0.95 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.84 6.40 -2.38 -0.02 0.82 16 31 H 0.12 1.62 6.31 -2.39 -0.02 1.60 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.43 2.44 9.10 -74.06 -0.67 1.77 16 34 H 0.08 0.85 6.36 -2.39 -0.02 0.84 16 35 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.78 7.09 -2.39 -0.02 1.77 16 40 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 41 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.09 1.78 5.63 -2.39 -0.01 1.77 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -79.01 376.23 -0.07 -79.08 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.31 Total: 15.06 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 3.91 Total: -42.75 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.37 Total: -82.19 kcal Atomic # 8 Polarization: -101.29 SS G_CDS: -4.64 Total: -105.93 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 92.36 SS G_CDS: -0.31 Total: 92.05 kcal Total: -79.01 -0.07 -79.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548574201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.222 kcal (2) G-P(sol) polarization free energy of solvation -79.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds