Wall clock time and date at job start Tue Mar 31 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.49629 * 2 1 4 4 C 1.53620 * 109.63358 * 239.90547 * 2 1 3 5 5 N 1.46930 * 108.54377 * 294.86353 * 4 2 1 6 6 S 1.65600 * 120.63093 * 126.36605 * 5 4 2 7 7 O 1.42098 * 104.27576 * 153.65307 * 6 5 4 8 8 O 1.42102 * 104.27841 * 25.79434 * 6 5 4 9 9 C 1.81404 * 104.45074 * 269.72260 * 6 5 4 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 6 5 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46725 * 60.00093 * 15 13 11 17 17 H 1.48505 * 109.46988 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47116 * 300.00069 * 15 13 11 19 19 C 1.46930 * 118.73999 * 306.09945 * 5 4 2 20 20 C 1.53190 * 108.77613 * 53.85211 * 19 5 4 21 21 C 1.53038 * 109.49735 * 120.06906 * 2 1 3 22 22 H 1.08999 * 109.44604 * 178.60000 * 21 2 1 23 23 C 1.52998 * 109.46009 * 298.56418 * 21 2 1 24 24 C 1.53001 * 109.46956 * 185.07116 * 23 21 2 25 25 C 1.50703 * 109.46908 * 180.02562 * 24 23 21 26 26 O 1.20827 * 120.00302 * 359.97438 * 25 24 23 27 27 O 1.34231 * 119.99804 * 179.97438 * 25 24 23 28 28 H 1.09003 * 109.46869 * 299.93439 * 1 2 3 29 29 H 1.08995 * 109.47178 * 59.92736 * 1 2 3 30 30 H 1.08993 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.74324 * 175.12600 * 4 2 1 32 32 H 1.09003 * 109.66759 * 54.55405 * 4 2 1 33 33 H 1.09002 * 109.47124 * 60.00022 * 9 6 5 34 34 H 1.09001 * 109.46975 * 300.00144 * 9 6 5 35 35 H 1.09001 * 109.47194 * 299.99756 * 10 9 6 36 36 H 1.08992 * 109.47399 * 59.99928 * 10 9 6 37 37 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 38 38 H 1.08988 * 109.58755 * 173.64606 * 19 5 4 39 39 H 1.09005 * 109.57839 * 293.92727 * 19 5 4 40 40 H 1.09002 * 109.49577 * 65.31888 * 20 19 5 41 41 H 1.08998 * 109.49996 * 185.38789 * 20 19 5 42 42 H 1.09001 * 109.47150 * 305.07089 * 23 21 2 43 43 H 1.08993 * 109.47224 * 65.06946 * 23 21 2 44 44 H 1.09001 * 109.47169 * 299.99962 * 24 23 21 45 45 H 1.09002 * 109.47422 * 60.00014 * 24 23 21 46 46 H 0.96703 * 116.99633 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0462 -0.7255 -1.2518 5 7 1.6516 -2.1384 -1.1691 6 16 0.8200 -2.8561 -2.4084 7 8 1.1542 -4.2332 -2.3034 8 8 1.1804 -2.1002 -3.5564 9 6 -0.9263 -2.5916 -1.9946 10 6 -1.8075 -3.2175 -3.0775 11 6 -3.2582 -2.9972 -2.7341 12 1 -3.5250 -2.4644 -1.8333 13 6 -4.2449 -3.4759 -3.5698 14 7 -3.9200 -4.1242 -4.6669 15 14 -6.0431 -3.2034 -3.1438 16 1 -6.3173 -1.7461 -3.0628 17 1 -6.8984 -3.8098 -4.1955 18 1 -6.3432 -3.8371 -1.8348 19 6 2.0140 -2.9040 0.0314 20 6 1.5030 -2.1555 1.2665 21 6 2.0408 -0.7228 1.2485 22 1 3.1305 -0.7441 1.2351 23 6 1.5607 0.0176 2.4983 24 6 2.1742 -0.6296 3.7416 25 6 1.7008 0.0993 4.9728 26 8 0.9502 1.0402 4.8667 27 8 2.1131 -0.2968 6.1873 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5149 -0.8893 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1327 -0.6518 -1.2984 32 1 1.6088 -0.2756 -2.1431 33 1 -1.1277 -1.5219 -1.9352 34 1 -1.1465 -3.0566 -1.0337 35 1 -1.5874 -2.7528 -4.0386 36 1 -1.6061 -4.2871 -3.1365 37 1 -4.6141 -4.4606 -5.2551 38 1 1.5554 -3.8918 -0.0129 39 1 3.0978 -3.0064 0.0860 40 1 0.4133 -2.1352 1.2545 41 1 1.8476 -2.6626 2.1676 42 1 1.8686 1.0617 2.4428 43 1 0.4739 -0.0380 2.5586 44 1 1.8664 -1.6738 3.7971 45 1 3.2612 -0.5740 3.6814 46 1 1.7829 0.2019 6.9471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556714711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:26 Heat of formation + Delta-G solvation = -191.101673 kcal Electronic energy + Delta-G solvation = -27866.493999 eV Core-core repulsion = 23882.216153 eV Total energy + Delta-G solvation = -3984.277846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67220 -39.49109 -36.66431 -36.56277 -35.46468 -34.84928 -33.89965 -32.52659 -31.16087 -30.83734 -27.23756 -26.20965 -25.51001 -23.16277 -22.91796 -21.51089 -20.89998 -19.36771 -18.55798 -18.19235 -17.61662 -16.83431 -16.57252 -16.41538 -15.84136 -15.51964 -15.04610 -14.77969 -14.55892 -14.52804 -14.50763 -13.86577 -13.38614 -13.34676 -13.26390 -12.86977 -12.52611 -12.31937 -12.04552 -11.99178 -11.88083 -11.75640 -11.63265 -11.57720 -11.44098 -11.32357 -11.15321 -11.06066 -10.92302 -10.88273 -10.79342 -10.48820 -10.39734 -10.34618 -10.25206 -9.73797 -9.30105 -8.72738 -8.49747 -6.11955 -4.17517 0.76974 1.85707 2.68421 3.03414 3.27282 3.32210 3.33939 4.29032 4.29870 4.38163 4.44987 4.49722 4.57342 4.65784 4.80836 4.98788 5.01669 5.06915 5.16049 5.17704 5.23141 5.29022 5.44233 5.48971 5.58717 5.61618 5.67181 5.68275 5.75621 5.77022 5.85369 5.87235 5.95643 6.04060 6.09755 6.16855 6.28643 6.36132 6.52683 6.71648 7.30465 7.36633 7.52550 7.80860 8.18143 8.85720 9.47192 10.99047 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003218 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.907052 B = 8699.626768 C =10170.023934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.100 4.100 3 H 0.080 0.920 4 C 0.127 3.873 5 N -1.004 6.004 6 S 2.589 3.411 7 O -0.966 6.966 8 O -0.965 6.965 9 C -0.591 4.591 10 C 0.030 3.970 11 C -0.520 4.520 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.123 3.877 20 C -0.140 4.140 21 C -0.078 4.078 22 H 0.075 0.925 23 C -0.107 4.107 24 C -0.116 4.116 25 C 0.476 3.524 26 O -0.515 6.515 27 O -0.521 6.521 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.132 8.039 18.278 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.120 4.120 3 H 0.099 0.901 4 C 0.001 3.999 5 N -0.840 5.840 6 S 2.688 3.312 7 O -0.956 6.956 8 O -0.955 6.955 9 C -0.724 4.724 10 C -0.009 4.009 11 C -0.559 4.559 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.002 4.002 20 C -0.179 4.179 21 C -0.096 4.096 22 H 0.093 0.907 23 C -0.144 4.144 24 C -0.153 4.153 25 C 0.318 3.682 26 O -0.403 6.403 27 O -0.333 6.333 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 15.456 7.536 16.994 24.176 hybrid contribution -1.718 0.740 1.230 2.238 sum 13.738 8.275 18.224 24.276 Atomic orbital electron populations 1.22114 0.94625 1.03021 1.02308 1.21575 0.96822 0.99154 0.94403 0.90125 1.21499 1.00086 0.79999 0.98285 1.57939 1.71984 1.19705 1.34418 1.05739 0.78099 0.73876 0.73505 1.93530 1.83143 1.33024 1.85900 1.93531 1.82518 1.72216 1.47258 1.30574 1.20357 1.10517 1.10989 1.18942 0.94702 0.96185 0.91115 1.20961 0.89710 1.36984 1.08242 0.92109 1.25061 0.99544 0.94916 0.94919 1.69941 1.33710 1.36854 1.12390 0.86545 0.84132 0.78554 0.78133 1.20076 1.21086 1.20088 1.21328 1.00628 0.94677 0.83589 1.22168 1.02264 0.95451 0.97999 1.21099 1.00259 0.94720 0.93555 0.90690 1.21575 1.01854 0.99715 0.91273 1.21512 1.03353 1.01311 0.89165 1.23710 0.77460 0.82106 0.84876 1.90745 1.34090 1.28300 1.87192 1.84551 1.70259 1.61086 1.17411 0.92103 0.92219 0.91489 0.91368 0.88981 0.86100 0.86361 0.94960 0.94978 0.92480 0.89102 0.91417 0.90541 0.90801 0.90888 0.90362 0.87278 0.87639 0.73225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.85 37.16 0.29 -1.40 16 2 C -0.10 -0.87 2.72 -90.28 -0.25 -1.12 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.13 1.37 5.75 -3.49 -0.02 1.35 16 5 N -1.00 -12.86 2.65 -113.27 -0.30 -13.16 16 6 S 2.59 46.21 5.41 -107.50 -0.58 45.63 16 7 O -0.97 -19.81 16.72 -57.54 -0.96 -20.77 16 8 O -0.96 -19.87 16.71 -57.54 -0.96 -20.84 16 9 C -0.59 -11.15 5.09 37.16 0.19 -10.96 16 10 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 11 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.12 1.27 6.31 -3.71 -0.02 1.25 16 20 C -0.14 -1.11 4.80 -26.61 -0.13 -1.24 16 21 C -0.08 -0.56 1.92 -90.58 -0.17 -0.73 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 C -0.11 -0.76 3.51 -26.73 -0.09 -0.85 16 24 C -0.12 -0.66 5.57 -27.88 -0.16 -0.82 16 25 C 0.48 3.76 8.33 36.01 0.30 4.06 16 26 O -0.52 -5.91 16.74 -18.75 -0.31 -6.23 16 27 O -0.52 -3.09 13.42 -39.26 -0.53 -3.62 16 28 H 0.06 0.58 6.58 -51.93 -0.34 0.24 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.75 4.39 -51.93 -0.23 0.52 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.09 7.09 -51.93 -0.37 0.72 16 33 H 0.12 2.07 7.09 -51.92 -0.37 1.70 16 34 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 1.02 7.10 -51.94 -0.37 0.65 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.68 6.33 -51.93 -0.33 0.35 16 41 H 0.07 0.43 6.50 -51.93 -0.34 0.09 16 42 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.08 0.67 6.70 -51.93 -0.35 0.32 16 44 H 0.11 0.51 6.54 -51.93 -0.34 0.17 16 45 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.41 0.90 9.10 45.56 0.41 1.32 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -36.92 372.07 -9.31 -46.23 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.38 Total: -0.39 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -0.61 Total: -22.89 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.44 Total: -38.91 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -2.76 Total: -51.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 46.21 SS G_CDS: -0.58 Total: 45.63 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.92 -9.31 -46.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556714711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.870 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds