Wall clock time and date at job start Tue Mar 31 2020 17:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.49629 * 2 1 4 4 C 1.53620 * 109.63358 * 239.90547 * 2 1 3 5 5 N 1.46930 * 108.54377 * 294.86353 * 4 2 1 6 6 S 1.65600 * 120.63093 * 126.36605 * 5 4 2 7 7 O 1.42098 * 104.27576 * 153.65307 * 6 5 4 8 8 O 1.42102 * 104.27841 * 25.79434 * 6 5 4 9 9 C 1.81404 * 104.45074 * 269.72260 * 6 5 4 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 6 5 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46725 * 60.00093 * 15 13 11 17 17 H 1.48505 * 109.46988 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47116 * 300.00069 * 15 13 11 19 19 C 1.46930 * 118.73999 * 306.09945 * 5 4 2 20 20 C 1.53190 * 108.77613 * 53.85211 * 19 5 4 21 21 C 1.53038 * 109.49735 * 120.06906 * 2 1 3 22 22 H 1.08999 * 109.44604 * 178.60000 * 21 2 1 23 23 C 1.52998 * 109.46009 * 298.56418 * 21 2 1 24 24 C 1.53001 * 109.46956 * 185.07116 * 23 21 2 25 25 C 1.50703 * 109.46908 * 180.02562 * 24 23 21 26 26 O 1.20827 * 120.00302 * 359.97438 * 25 24 23 27 27 O 1.34231 * 119.99804 * 179.97438 * 25 24 23 28 28 H 1.09003 * 109.46869 * 299.93439 * 1 2 3 29 29 H 1.08995 * 109.47178 * 59.92736 * 1 2 3 30 30 H 1.08993 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.74324 * 175.12600 * 4 2 1 32 32 H 1.09003 * 109.66759 * 54.55405 * 4 2 1 33 33 H 1.09002 * 109.47124 * 60.00022 * 9 6 5 34 34 H 1.09001 * 109.46975 * 300.00144 * 9 6 5 35 35 H 1.09001 * 109.47194 * 299.99756 * 10 9 6 36 36 H 1.08992 * 109.47399 * 59.99928 * 10 9 6 37 37 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 38 38 H 1.08988 * 109.58755 * 173.64606 * 19 5 4 39 39 H 1.09005 * 109.57839 * 293.92727 * 19 5 4 40 40 H 1.09002 * 109.49577 * 65.31888 * 20 19 5 41 41 H 1.08998 * 109.49996 * 185.38789 * 20 19 5 42 42 H 1.09001 * 109.47150 * 305.07089 * 23 21 2 43 43 H 1.08993 * 109.47224 * 65.06946 * 23 21 2 44 44 H 1.09001 * 109.47169 * 299.99962 * 24 23 21 45 45 H 1.09002 * 109.47422 * 60.00014 * 24 23 21 46 46 H 0.96703 * 116.99633 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0462 -0.7255 -1.2518 5 7 1.6516 -2.1384 -1.1691 6 16 0.8200 -2.8561 -2.4084 7 8 1.1542 -4.2332 -2.3034 8 8 1.1804 -2.1002 -3.5564 9 6 -0.9263 -2.5916 -1.9946 10 6 -1.8075 -3.2175 -3.0775 11 6 -3.2582 -2.9972 -2.7341 12 1 -3.5250 -2.4644 -1.8333 13 6 -4.2449 -3.4759 -3.5698 14 7 -3.9200 -4.1242 -4.6669 15 14 -6.0431 -3.2034 -3.1438 16 1 -6.3173 -1.7461 -3.0628 17 1 -6.8984 -3.8098 -4.1955 18 1 -6.3432 -3.8371 -1.8348 19 6 2.0140 -2.9040 0.0314 20 6 1.5030 -2.1555 1.2665 21 6 2.0408 -0.7228 1.2485 22 1 3.1305 -0.7441 1.2351 23 6 1.5607 0.0176 2.4983 24 6 2.1742 -0.6296 3.7416 25 6 1.7008 0.0993 4.9728 26 8 0.9502 1.0402 4.8667 27 8 2.1131 -0.2968 6.1873 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5149 -0.8893 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1327 -0.6518 -1.2984 32 1 1.6088 -0.2756 -2.1431 33 1 -1.1277 -1.5219 -1.9352 34 1 -1.1465 -3.0566 -1.0337 35 1 -1.5874 -2.7528 -4.0386 36 1 -1.6061 -4.2871 -3.1365 37 1 -4.6141 -4.4606 -5.2551 38 1 1.5554 -3.8918 -0.0129 39 1 3.0978 -3.0064 0.0860 40 1 0.4133 -2.1352 1.2545 41 1 1.8476 -2.6626 2.1676 42 1 1.8686 1.0617 2.4428 43 1 0.4739 -0.0380 2.5586 44 1 1.8664 -1.6738 3.7971 45 1 3.2612 -0.5740 3.6814 46 1 1.7829 0.2019 6.9471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556714711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:25 Heat of formation + Delta-G solvation = -218.060611 kcal Electronic energy + Delta-G solvation = -27867.663026 eV Core-core repulsion = 23882.216153 eV Total energy + Delta-G solvation = -3985.446873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25441 -40.22465 -38.21922 -37.12233 -37.00777 -35.91827 -35.61634 -33.35217 -33.05794 -31.52722 -28.07719 -27.51574 -26.85966 -24.08236 -23.62328 -23.23564 -21.47440 -20.39243 -19.39183 -19.15820 -18.85196 -18.30759 -17.39747 -17.20511 -17.07009 -16.96032 -16.54549 -15.84450 -15.64566 -15.59446 -15.15523 -15.01426 -14.64893 -14.45443 -14.07439 -13.92934 -13.76984 -13.62449 -13.20993 -13.18794 -13.00707 -12.91413 -12.85310 -12.79388 -12.51983 -12.50374 -12.38100 -12.22335 -12.18283 -12.12974 -11.90024 -11.68901 -11.51247 -11.48398 -11.17614 -11.01962 -10.92428 -10.64744 -9.79012 -8.26484 -6.40560 -0.68093 1.30515 1.39458 1.42852 1.50998 1.78481 2.26884 2.37151 2.86774 3.06603 3.18995 3.65288 3.76221 3.87427 4.00832 4.06645 4.11575 4.24017 4.28916 4.36266 4.42394 4.56662 4.59356 4.71530 4.74858 4.77499 4.86343 4.93884 4.98354 5.01337 5.04550 5.10082 5.21202 5.25294 5.25939 5.27710 5.37803 5.44726 5.51310 5.66994 5.67988 5.72990 5.80988 6.06053 6.72736 7.06444 7.29522 8.85601 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003218 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.907052 B = 8699.626768 C =10170.023934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 H 0.099 0.901 4 C 0.119 3.881 5 N -0.992 5.992 6 S 2.610 3.390 7 O -0.995 6.995 8 O -0.996 6.996 9 C -0.589 4.589 10 C 0.024 3.976 11 C -0.538 4.538 12 H 0.074 0.926 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.972 3.028 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.263 1.263 19 C 0.113 3.887 20 C -0.138 4.138 21 C -0.070 4.070 22 H 0.099 0.901 23 C -0.101 4.101 24 C -0.113 4.113 25 C 0.478 3.522 26 O -0.560 6.560 27 O -0.518 6.518 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.003 0.997 36 H 0.005 0.995 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.198 8.848 21.035 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.114 4.114 3 H 0.117 0.883 4 C -0.006 4.006 5 N -0.831 5.831 6 S 2.708 3.292 7 O -0.985 6.985 8 O -0.986 6.986 9 C -0.721 4.721 10 C -0.015 4.015 11 C -0.577 4.577 12 H 0.092 0.908 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.796 3.204 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.011 4.011 20 C -0.177 4.177 21 C -0.088 4.088 22 H 0.117 0.883 23 C -0.138 4.138 24 C -0.150 4.150 25 C 0.323 3.677 26 O -0.451 6.451 27 O -0.332 6.332 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.149 0.851 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 16.520 8.339 19.780 27.088 hybrid contribution -1.949 0.507 0.451 2.063 sum 14.572 8.846 20.231 26.456 Atomic orbital electron populations 1.22158 0.96147 1.02254 1.02071 1.21571 0.95507 1.00135 0.94227 0.88319 1.21778 1.01479 0.78456 0.98868 1.57547 1.70544 1.20842 1.34204 1.04760 0.77495 0.73101 0.73839 1.93483 1.83300 1.35081 1.86618 1.93483 1.82705 1.72730 1.49727 1.30479 1.20978 1.11077 1.09546 1.18779 0.95796 0.94790 0.92115 1.21472 0.90876 1.36696 1.08645 0.90759 1.26102 1.04848 0.94502 0.94685 1.70092 1.35372 1.38202 1.13734 0.85394 0.77816 0.79004 0.78231 1.18862 1.20904 1.18726 1.21666 1.02116 0.94201 0.83105 1.22197 1.01688 0.95953 0.97865 1.21063 1.01509 0.93755 0.92510 0.88303 1.21453 1.00806 0.99637 0.91946 1.21586 1.04694 1.01462 0.87305 1.24150 0.76430 0.81353 0.85810 1.90736 1.36208 1.30378 1.87809 1.84522 1.69905 1.61121 1.17617 0.91509 0.93354 0.92522 0.88961 0.90503 0.84525 0.84366 0.97849 0.97704 0.92376 0.90253 0.89002 0.91678 0.87769 0.91365 0.92209 0.85701 0.85086 0.71496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 7.85 71.98 0.56 -2.73 16 2 C -0.09 -1.42 2.72 -10.57 -0.03 -1.45 16 3 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.12 2.33 5.75 86.51 0.50 2.83 16 5 N -0.99 -23.98 2.65 -512.28 -1.36 -25.34 16 6 S 2.61 94.63 5.41 -56.49 -0.31 94.32 16 7 O -0.99 -41.57 16.72 -127.65 -2.13 -43.70 16 8 O -1.00 -42.13 16.71 -127.65 -2.13 -44.26 16 9 C -0.59 -22.68 5.09 71.98 0.37 -22.32 16 10 C 0.02 1.27 4.98 29.85 0.15 1.42 16 11 C -0.54 -30.10 9.11 25.60 0.23 -29.86 16 12 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 14 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 15 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 C 0.11 2.05 6.31 86.36 0.55 2.59 16 20 C -0.14 -1.73 4.80 30.67 0.15 -1.59 16 21 C -0.07 -0.75 1.92 -10.77 -0.02 -0.77 16 22 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 23 C -0.10 -1.14 3.51 30.59 0.11 -1.03 16 24 C -0.11 -0.88 5.57 29.85 0.17 -0.71 16 25 C 0.48 6.45 8.33 71.24 0.59 7.04 16 26 O -0.56 -12.23 16.74 21.96 0.37 -11.86 16 27 O -0.52 -4.83 13.42 -51.43 -0.69 -5.53 16 28 H 0.07 1.21 6.58 -2.39 -0.02 1.19 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.20 4.39 -2.39 -0.01 1.19 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.77 7.09 -2.39 -0.02 1.75 16 33 H 0.14 4.74 7.09 -2.39 -0.02 4.73 16 34 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.08 1.65 7.10 -2.39 -0.02 1.63 16 39 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 1.00 6.33 -2.39 -0.02 0.98 16 41 H 0.10 0.72 6.50 -2.39 -0.02 0.71 16 42 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 43 H 0.06 0.91 6.70 -2.39 -0.02 0.90 16 44 H 0.13 0.61 6.54 -2.39 -0.02 0.59 16 45 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.42 1.01 9.10 -74.06 -0.67 0.34 16 Total: -1.00 -82.90 372.07 0.16 -82.74 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.32 Total: 11.34 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 3.78 Total: -46.28 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.07 Total: -82.42 kcal Atomic # 8 Polarization: -100.76 SS G_CDS: -4.59 Total: -105.36 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 94.63 SS G_CDS: -0.31 Total: 94.32 kcal Total: -82.90 0.16 -82.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556714711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.318 kcal (2) G-P(sol) polarization free energy of solvation -82.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds