Wall clock time and date at job start Tue Mar 31 2020 17:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.52403 * 2 1 4 4 C 1.53187 * 109.48625 * 120.09371 * 2 1 3 5 5 N 1.46929 * 108.76580 * 174.59550 * 4 2 1 6 6 S 1.65595 * 120.62908 * 126.40080 * 5 4 2 7 7 O 1.42098 * 104.27914 * 26.05391 * 6 5 4 8 8 O 1.42110 * 104.27601 * 153.90944 * 6 5 4 9 9 C 1.81402 * 104.45319 * 269.98022 * 6 5 4 10 10 C 1.53004 * 109.47225 * 180.02562 * 9 6 5 11 11 C 1.50693 * 109.46838 * 180.02562 * 10 9 6 12 12 H 1.08000 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99990 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99761 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00390 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46774 * 90.00259 * 15 13 11 17 17 H 1.48498 * 109.47334 * 210.00160 * 15 13 11 18 18 H 1.48495 * 109.47303 * 330.00542 * 15 13 11 19 19 C 1.46925 * 118.73896 * 306.38698 * 5 4 2 20 20 C 1.53188 * 108.77775 * 53.60168 * 19 5 4 21 21 C 1.53040 * 109.31609 * 305.36649 * 20 19 5 22 22 H 1.09001 * 109.45829 * 301.36086 * 21 20 19 23 23 C 1.52999 * 109.46199 * 181.38047 * 21 20 19 24 24 C 1.53006 * 109.46623 * 64.97519 * 23 21 20 25 25 C 1.50699 * 109.46866 * 179.97438 * 24 23 21 26 26 O 1.20828 * 120.00000 * 359.97438 * 25 24 23 27 27 O 1.34231 * 120.00150 * 180.02562 * 25 24 23 28 28 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47182 * 300.07987 * 1 2 3 30 30 H 1.09007 * 109.47297 * 60.07472 * 1 2 3 31 31 H 1.09001 * 109.60240 * 54.80861 * 4 2 1 32 32 H 1.09000 * 109.70146 * 294.44464 * 4 2 1 33 33 H 1.08998 * 109.46955 * 300.00412 * 9 6 5 34 34 H 1.09002 * 109.46725 * 60.00026 * 9 6 5 35 35 H 1.09003 * 109.46952 * 300.00115 * 10 9 6 36 36 H 1.09002 * 109.46613 * 60.00093 * 10 9 6 37 37 H 0.97007 * 119.99816 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.58265 * 293.82051 * 19 5 4 39 39 H 1.08996 * 109.70575 * 173.46690 * 19 5 4 40 40 H 1.08998 * 109.50162 * 185.41461 * 20 19 5 41 41 H 1.09001 * 109.49775 * 65.31868 * 20 19 5 42 42 H 1.09000 * 109.47486 * 304.97691 * 23 21 20 43 43 H 1.09001 * 109.47362 * 184.96968 * 23 21 20 44 44 H 1.08993 * 109.46955 * 300.00075 * 24 23 21 45 45 H 1.09000 * 109.47050 * 59.99904 * 24 23 21 46 46 H 0.96691 * 116.99938 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0410 -0.7241 1.2495 5 7 3.5044 -0.8292 1.1696 6 16 4.4582 -0.2852 2.4091 7 8 3.6250 -0.3726 3.5568 8 8 5.6447 -1.0604 2.3044 9 6 4.7924 1.4491 1.9956 10 6 5.6765 2.0705 3.0788 11 6 5.9535 3.5114 2.7356 12 1 5.5407 3.9410 1.8347 13 6 6.7340 4.2815 3.5716 14 7 7.2371 3.7582 4.6683 15 14 7.0780 6.0674 3.1458 16 1 6.0261 6.9298 3.7418 17 1 8.4043 6.4587 3.6871 18 1 7.0770 6.2336 1.6702 19 6 4.1052 -1.4265 -0.0308 20 6 3.5707 -0.6948 -1.2660 21 6 2.0407 -0.7231 -1.2485 22 1 1.6968 -1.7573 -1.2353 23 6 1.5036 -0.0231 -2.4984 24 6 1.9096 -0.8170 -3.7417 25 6 1.3801 -0.1279 -4.9729 26 8 0.7429 0.8932 -4.8667 27 8 1.6154 -0.6490 -6.1873 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5151 0.8893 30 1 -0.3634 0.5127 -0.8907 31 1 1.6051 -1.7220 1.2978 32 1 1.7633 -0.1605 2.1402 33 1 5.3046 1.5014 1.0349 34 1 3.8515 1.9962 1.9360 35 1 5.1646 2.0181 4.0398 36 1 6.6173 1.5233 3.1379 37 1 7.7865 4.2999 5.2563 38 1 3.8376 -2.4817 -0.0870 39 1 5.1897 -1.3265 0.0124 40 1 3.9334 -1.1892 -2.1671 41 1 3.9156 0.3392 -1.2539 42 1 1.9187 0.9830 -2.5582 43 1 0.4165 0.0351 -2.4435 44 1 2.9966 -0.8752 -3.7966 45 1 1.4945 -1.8231 -3.6820 46 1 1.2559 -0.1711 -6.9472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556714713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:33 Heat of formation + Delta-G solvation = -194.209026 kcal Electronic energy + Delta-G solvation = -27545.528384 eV Core-core repulsion = 23561.115794 eV Total energy + Delta-G solvation = -3984.412591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66221 -39.32497 -36.66381 -36.56222 -35.46737 -34.90179 -33.88318 -33.01927 -31.15201 -30.83312 -27.06638 -26.22147 -25.58306 -22.97978 -22.46125 -21.53750 -20.88508 -20.01072 -18.56467 -18.39950 -17.55294 -16.86988 -16.56844 -16.43246 -16.01607 -15.48212 -14.89311 -14.70395 -14.56992 -14.52790 -14.15339 -14.01655 -13.58559 -13.36234 -13.19122 -12.75846 -12.52120 -12.37178 -12.20762 -12.11669 -11.90121 -11.75851 -11.69136 -11.58106 -11.47522 -11.28419 -11.15871 -11.08012 -10.96185 -10.91474 -10.90284 -10.47493 -10.38834 -10.36959 -10.34446 -9.73929 -9.30095 -8.75002 -8.50344 -6.12468 -4.17991 0.76573 1.85501 2.68180 3.02252 3.26044 3.32337 3.35052 4.28087 4.29115 4.38001 4.43498 4.50251 4.55586 4.63251 4.81573 4.90589 4.96832 5.04810 5.16638 5.21988 5.22739 5.29868 5.39640 5.41768 5.54302 5.58932 5.62314 5.65781 5.72315 5.75311 5.79338 5.84068 5.91954 5.99371 6.04531 6.15359 6.25784 6.29861 6.50269 6.68834 7.30184 7.36261 7.52402 7.80630 8.17806 8.85494 9.46821 10.98561 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003116 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.781172 B = 8984.061503 C =10338.575142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.080 0.920 4 C 0.128 3.872 5 N -1.006 6.006 6 S 2.590 3.410 7 O -0.965 6.965 8 O -0.965 6.965 9 C -0.589 4.589 10 C 0.028 3.972 11 C -0.520 4.520 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.122 3.878 20 C -0.138 4.138 21 C -0.078 4.078 22 H 0.075 0.925 23 C -0.109 4.109 24 C -0.116 4.116 25 C 0.476 3.524 26 O -0.515 6.515 27 O -0.521 6.521 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.217 -11.940 -18.307 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 H 0.099 0.901 4 C 0.002 3.998 5 N -0.842 5.842 6 S 2.689 3.311 7 O -0.955 6.955 8 O -0.955 6.955 9 C -0.722 4.722 10 C -0.011 4.011 11 C -0.559 4.559 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.003 4.003 20 C -0.177 4.177 21 C -0.096 4.096 22 H 0.094 0.906 23 C -0.146 4.146 24 C -0.153 4.153 25 C 0.319 3.681 26 O -0.403 6.403 27 O -0.333 6.333 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.844 -12.421 -17.025 24.680 hybrid contribution -0.096 1.880 -1.216 2.241 sum -12.939 -10.542 -18.241 24.725 Atomic orbital electron populations 1.21872 0.94551 1.02028 1.02373 1.21555 0.95863 1.00504 0.94510 0.90150 1.21419 0.79119 1.01046 0.98208 1.57979 1.15728 1.75994 1.34492 1.05723 0.73436 0.78488 0.73466 1.93531 1.67455 1.87269 1.47250 1.93532 1.48003 1.68111 1.85882 1.30495 1.10321 1.20377 1.11018 1.18955 0.93606 0.97362 0.91140 1.21002 1.31955 0.94709 1.08240 0.92073 1.25068 0.95550 0.98937 0.94930 1.69959 1.33748 1.36721 1.12452 0.86476 0.77766 0.84410 0.78678 1.20456 1.21001 1.19766 1.21336 0.98392 0.97000 0.83579 1.22129 0.95374 1.02116 0.98064 1.21131 0.95194 0.99793 0.93525 0.90632 1.21616 1.02337 0.99445 0.91245 1.21506 1.03747 1.00917 0.89160 1.23702 0.76608 0.82958 0.84871 1.90745 1.37859 1.24528 1.87190 1.84548 1.74217 1.57127 1.17408 0.92533 0.92189 0.91927 0.91401 0.89001 0.86365 0.86352 0.94927 0.94920 0.92533 0.91433 0.89010 0.90668 0.90860 0.90667 0.90367 0.87292 0.87626 0.73221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.82 37.16 0.33 -0.82 16 2 C -0.10 -0.93 2.41 -90.50 -0.22 -1.15 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.13 1.41 5.60 -3.71 -0.02 1.39 16 5 N -1.01 -13.04 3.22 -113.52 -0.37 -13.40 16 6 S 2.59 46.22 5.41 -107.50 -0.58 45.63 16 7 O -0.96 -19.86 16.72 -57.54 -0.96 -20.82 16 8 O -0.96 -19.75 16.73 -57.54 -0.96 -20.71 16 9 C -0.59 -11.19 6.12 37.16 0.23 -10.96 16 10 C 0.03 0.72 4.98 -27.88 -0.14 0.59 16 11 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 19 C 0.12 1.28 6.31 -3.71 -0.02 1.26 16 20 C -0.14 -1.11 5.14 -26.61 -0.14 -1.24 16 21 C -0.08 -0.57 1.70 -90.57 -0.15 -0.73 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 23 C -0.11 -0.78 3.73 -26.73 -0.10 -0.88 16 24 C -0.12 -0.67 5.57 -27.88 -0.16 -0.82 16 25 C 0.48 3.76 8.33 36.01 0.30 4.06 16 26 O -0.52 -5.91 16.74 -18.75 -0.31 -6.22 16 27 O -0.52 -3.09 13.42 -39.26 -0.53 -3.62 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 6.30 -51.93 -0.33 0.13 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.10 7.09 -51.93 -0.37 0.73 16 33 H 0.12 2.02 8.14 -51.93 -0.42 1.59 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 35 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.03 7.11 -51.93 -0.37 0.66 16 40 H 0.07 0.44 6.50 -51.93 -0.34 0.10 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.08 0.59 6.10 -51.93 -0.32 0.28 16 44 H 0.11 0.51 6.53 -51.93 -0.34 0.17 16 45 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.41 0.90 9.10 45.56 0.41 1.31 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -37.11 380.25 -9.45 -46.55 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.68 Total: -1.10 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -0.50 Total: -22.47 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.37 Total: -39.21 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.77 Total: -51.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 46.22 SS G_CDS: -0.58 Total: 45.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.11 -9.45 -46.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556714713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.654 kcal (2) G-P(sol) polarization free energy of solvation -37.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds