Wall clock time and date at job start Tue Mar 31 2020 17:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.52403 * 2 1 4 4 C 1.53187 * 109.48625 * 120.09371 * 2 1 3 5 5 N 1.46929 * 108.76580 * 174.59550 * 4 2 1 6 6 S 1.65595 * 120.62908 * 126.40080 * 5 4 2 7 7 O 1.42098 * 104.27914 * 26.05391 * 6 5 4 8 8 O 1.42110 * 104.27601 * 153.90944 * 6 5 4 9 9 C 1.81402 * 104.45319 * 269.98022 * 6 5 4 10 10 C 1.53004 * 109.47225 * 180.02562 * 9 6 5 11 11 C 1.50693 * 109.46838 * 180.02562 * 10 9 6 12 12 H 1.08000 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99990 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99761 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00390 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46774 * 90.00259 * 15 13 11 17 17 H 1.48498 * 109.47334 * 210.00160 * 15 13 11 18 18 H 1.48495 * 109.47303 * 330.00542 * 15 13 11 19 19 C 1.46925 * 118.73896 * 306.38698 * 5 4 2 20 20 C 1.53188 * 108.77775 * 53.60168 * 19 5 4 21 21 C 1.53040 * 109.31609 * 305.36649 * 20 19 5 22 22 H 1.09001 * 109.45829 * 301.36086 * 21 20 19 23 23 C 1.52999 * 109.46199 * 181.38047 * 21 20 19 24 24 C 1.53006 * 109.46623 * 64.97519 * 23 21 20 25 25 C 1.50699 * 109.46866 * 179.97438 * 24 23 21 26 26 O 1.20828 * 120.00000 * 359.97438 * 25 24 23 27 27 O 1.34231 * 120.00150 * 180.02562 * 25 24 23 28 28 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47182 * 300.07987 * 1 2 3 30 30 H 1.09007 * 109.47297 * 60.07472 * 1 2 3 31 31 H 1.09001 * 109.60240 * 54.80861 * 4 2 1 32 32 H 1.09000 * 109.70146 * 294.44464 * 4 2 1 33 33 H 1.08998 * 109.46955 * 300.00412 * 9 6 5 34 34 H 1.09002 * 109.46725 * 60.00026 * 9 6 5 35 35 H 1.09003 * 109.46952 * 300.00115 * 10 9 6 36 36 H 1.09002 * 109.46613 * 60.00093 * 10 9 6 37 37 H 0.97007 * 119.99816 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.58265 * 293.82051 * 19 5 4 39 39 H 1.08996 * 109.70575 * 173.46690 * 19 5 4 40 40 H 1.08998 * 109.50162 * 185.41461 * 20 19 5 41 41 H 1.09001 * 109.49775 * 65.31868 * 20 19 5 42 42 H 1.09000 * 109.47486 * 304.97691 * 23 21 20 43 43 H 1.09001 * 109.47362 * 184.96968 * 23 21 20 44 44 H 1.08993 * 109.46955 * 300.00075 * 24 23 21 45 45 H 1.09000 * 109.47050 * 59.99904 * 24 23 21 46 46 H 0.96691 * 116.99938 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0410 -0.7241 1.2495 5 7 3.5044 -0.8292 1.1696 6 16 4.4582 -0.2852 2.4091 7 8 3.6250 -0.3726 3.5568 8 8 5.6447 -1.0604 2.3044 9 6 4.7924 1.4491 1.9956 10 6 5.6765 2.0705 3.0788 11 6 5.9535 3.5114 2.7356 12 1 5.5407 3.9410 1.8347 13 6 6.7340 4.2815 3.5716 14 7 7.2371 3.7582 4.6683 15 14 7.0780 6.0674 3.1458 16 1 6.0261 6.9298 3.7418 17 1 8.4043 6.4587 3.6871 18 1 7.0770 6.2336 1.6702 19 6 4.1052 -1.4265 -0.0308 20 6 3.5707 -0.6948 -1.2660 21 6 2.0407 -0.7231 -1.2485 22 1 1.6968 -1.7573 -1.2353 23 6 1.5036 -0.0231 -2.4984 24 6 1.9096 -0.8170 -3.7417 25 6 1.3801 -0.1279 -4.9729 26 8 0.7429 0.8932 -4.8667 27 8 1.6154 -0.6490 -6.1873 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5151 0.8893 30 1 -0.3634 0.5127 -0.8907 31 1 1.6051 -1.7220 1.2978 32 1 1.7633 -0.1605 2.1402 33 1 5.3046 1.5014 1.0349 34 1 3.8515 1.9962 1.9360 35 1 5.1646 2.0181 4.0398 36 1 6.6173 1.5233 3.1379 37 1 7.7865 4.2999 5.2563 38 1 3.8376 -2.4817 -0.0870 39 1 5.1897 -1.3265 0.0124 40 1 3.9334 -1.1892 -2.1671 41 1 3.9156 0.3392 -1.2539 42 1 1.9187 0.9830 -2.5582 43 1 0.4165 0.0351 -2.4435 44 1 2.9966 -0.8752 -3.7966 45 1 1.4945 -1.8231 -3.6820 46 1 1.2559 -0.1711 -6.9472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556714713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:32 Heat of formation + Delta-G solvation = -221.304088 kcal Electronic energy + Delta-G solvation = -27546.703315 eV Core-core repulsion = 23561.115794 eV Total energy + Delta-G solvation = -3985.587521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.24487 -40.06094 -38.22043 -37.12736 -37.00804 -35.91570 -35.69936 -33.71170 -33.12960 -31.52583 -27.73172 -27.61890 -26.93786 -23.91599 -23.41162 -22.99848 -21.47366 -20.73378 -19.84516 -19.11615 -18.94181 -18.28962 -17.44341 -17.26974 -17.13263 -16.96709 -16.54324 -15.87415 -15.55179 -15.23867 -15.11311 -14.87256 -14.76957 -14.46549 -14.27670 -13.94379 -13.73411 -13.48443 -13.24657 -13.18805 -12.95758 -12.93772 -12.81945 -12.79692 -12.68364 -12.56857 -12.48787 -12.26397 -12.15216 -11.98492 -11.83606 -11.80092 -11.60739 -11.52871 -11.21584 -11.02130 -10.96527 -10.66235 -9.83140 -8.27480 -6.41677 -0.68972 1.29916 1.39310 1.41131 1.52292 1.76817 2.26020 2.36650 2.86506 3.05680 3.18536 3.64001 3.75365 3.85819 3.97371 4.05051 4.08992 4.19408 4.26225 4.32784 4.47151 4.55057 4.59557 4.72939 4.74829 4.78812 4.82513 4.88627 4.94093 4.96696 5.03827 5.14997 5.21887 5.22775 5.26030 5.26630 5.35850 5.38552 5.56120 5.65339 5.67131 5.72115 5.75815 6.05157 6.71865 7.06049 7.28564 8.84805 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003116 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.781172 B = 8984.061503 C =10338.575142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.995 5.995 6 S 2.613 3.387 7 O -0.996 6.996 8 O -0.993 6.993 9 C -0.589 4.589 10 C 0.022 3.978 11 C -0.539 4.539 12 H 0.074 0.926 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.973 3.027 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.258 1.258 19 C 0.112 3.888 20 C -0.136 4.136 21 C -0.071 4.071 22 H 0.097 0.903 23 C -0.103 4.103 24 C -0.113 4.113 25 C 0.478 3.522 26 O -0.560 6.560 27 O -0.518 6.518 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.239 -12.624 -21.010 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.085 0.915 4 C -0.004 4.004 5 N -0.834 5.834 6 S 2.711 3.289 7 O -0.986 6.986 8 O -0.983 6.983 9 C -0.720 4.720 10 C -0.017 4.017 11 C -0.578 4.578 12 H 0.092 0.908 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.182 1.182 19 C -0.013 4.013 20 C -0.174 4.174 21 C -0.089 4.089 22 H 0.115 0.885 23 C -0.141 4.141 24 C -0.150 4.150 25 C 0.323 3.677 26 O -0.451 6.451 27 O -0.331 6.331 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.143 0.857 45 H 0.149 0.851 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -13.860 -13.106 -19.757 27.462 hybrid contribution 0.172 1.996 -0.445 2.052 sum -13.688 -11.110 -20.202 26.813 Atomic orbital electron populations 1.21847 0.93437 1.02973 1.02252 1.21543 0.96740 0.99716 0.94359 0.91527 1.21678 0.77549 1.02390 0.98828 1.57601 1.16194 1.75223 1.34345 1.04704 0.72973 0.77501 0.73734 1.93483 1.68063 1.87363 1.49685 1.93487 1.49893 1.68371 1.86578 1.30409 1.10006 1.22007 1.09587 1.18798 0.93407 0.97285 0.92170 1.21507 1.31817 0.95830 1.08649 0.90807 1.26115 0.95280 1.04098 0.94690 1.70105 1.34720 1.38767 1.13781 0.85323 0.77658 0.78202 0.79149 1.19597 1.20686 1.18204 1.21681 0.97968 0.98493 0.83115 1.22159 0.95788 1.01541 0.97958 1.21093 0.94598 1.00679 0.92539 0.88463 1.21496 1.01934 0.98702 0.91931 1.21577 1.04715 1.01456 0.87290 1.24125 0.75554 0.82227 0.85799 1.90736 1.40040 1.26526 1.87806 1.84518 1.73921 1.57091 1.17599 0.91044 0.92821 0.91600 0.89286 0.90468 0.84363 0.84643 0.97760 0.97590 0.92352 0.89085 0.90022 0.87572 0.91950 0.92630 0.90777 0.85683 0.85065 0.71477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.82 71.98 0.63 -1.32 16 2 C -0.10 -1.65 2.41 -10.71 -0.03 -1.67 16 3 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 4 C 0.12 2.45 5.60 86.36 0.48 2.93 16 5 N -0.99 -24.47 3.22 -513.08 -1.65 -26.12 16 6 S 2.61 94.56 5.41 -56.49 -0.31 94.25 16 7 O -1.00 -42.05 16.72 -127.65 -2.13 -44.18 16 8 O -0.99 -41.32 16.73 -127.65 -2.14 -43.46 16 9 C -0.59 -22.71 6.12 71.98 0.44 -22.27 16 10 C 0.02 1.18 4.98 29.85 0.15 1.33 16 11 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 12 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 13 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 14 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 15 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 19 C 0.11 2.06 6.31 86.36 0.54 2.61 16 20 C -0.14 -1.75 5.14 30.67 0.16 -1.59 16 21 C -0.07 -0.81 1.70 -10.76 -0.02 -0.83 16 22 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 23 C -0.10 -1.22 3.73 30.60 0.11 -1.10 16 24 C -0.11 -0.91 5.57 29.85 0.17 -0.74 16 25 C 0.48 6.50 8.33 71.24 0.59 7.10 16 26 O -0.56 -12.28 16.74 21.96 0.37 -11.91 16 27 O -0.52 -4.84 13.42 -51.43 -0.69 -5.53 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.85 6.30 -2.38 -0.02 0.84 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.82 7.09 -2.39 -0.02 1.80 16 33 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 34 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.71 7.11 -2.39 -0.02 1.69 16 40 H 0.11 0.76 6.50 -2.39 -0.02 0.74 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 43 H 0.07 0.96 6.10 -2.39 -0.01 0.94 16 44 H 0.13 0.63 6.53 -2.39 -0.02 0.62 16 45 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.42 1.01 9.10 -74.06 -0.67 0.33 16 Total: -1.00 -82.94 380.25 0.00 -82.94 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.31 Total: 10.75 kcal Atomic # 6 Polarization: -49.30 SS G_CDS: 3.93 Total: -45.37 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.37 Total: -83.23 kcal Atomic # 8 Polarization: -100.49 SS G_CDS: -4.59 Total: -105.08 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 94.56 SS G_CDS: -0.31 Total: 94.25 kcal Total: -82.94 0.00 -82.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556714713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.366 kcal (2) G-P(sol) polarization free energy of solvation -82.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds