Wall clock time and date at job start Tue Mar 31 2020 18:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.53001 * 109.46826 * 119.99986 * 2 1 3 5 5 H 1.09002 * 109.47046 * 299.99481 * 4 2 1 6 6 C 1.50706 * 109.46725 * 180.02562 * 4 2 1 7 7 O 1.20821 * 120.00048 * 250.85203 * 6 4 2 8 8 O 1.34223 * 119.99869 * 70.85668 * 6 4 2 9 9 C 1.52998 * 109.47253 * 60.00086 * 4 2 1 10 10 H 1.08997 * 109.47109 * 295.23678 * 9 4 2 11 11 C 1.53002 * 109.46917 * 55.24114 * 9 4 2 12 12 N 1.46502 * 109.46739 * 175.24135 * 9 4 2 13 13 S 1.65602 * 119.99882 * 145.00440 * 12 9 4 14 14 O 1.42097 * 104.27368 * 308.92289 * 13 12 9 15 15 O 1.42097 * 104.27637 * 181.06690 * 13 12 9 16 16 C 1.81398 * 104.45000 * 64.99642 * 13 12 9 17 17 C 1.53000 * 109.46767 * 184.40129 * 16 13 12 18 18 C 1.50704 * 115.55128 * 294.05425 * 17 16 13 19 19 H 1.07999 * 120.00020 * 93.43835 * 18 17 16 20 20 C 1.37877 * 120.00007 * 273.16215 * 18 17 16 21 21 N 1.31517 * 119.99722 * 355.54999 * 20 18 17 22 22 Si 1.86793 * 119.99937 * 175.54606 * 20 18 17 23 23 H 1.48498 * 109.47203 * 60.00726 * 22 20 18 24 24 H 1.48504 * 109.46802 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47420 * 300.00184 * 22 20 18 26 26 C 1.53001 * 117.49906 * 79.72521 * 17 16 13 27 27 C 1.53002 * 117.49803 * 148.38593 * 17 16 13 28 28 H 1.08991 * 109.47168 * 300.00075 * 1 2 3 29 29 H 1.08997 * 109.46913 * 60.00512 * 1 2 3 30 30 H 1.09003 * 109.46578 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46885 * 239.99566 * 2 1 3 32 32 H 1.08993 * 109.47386 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46614 * 300.00010 * 3 2 1 34 34 H 1.09004 * 109.46927 * 59.99644 * 3 2 1 35 35 H 0.96703 * 117.00285 * 179.97438 * 8 6 4 36 36 H 1.09003 * 109.47061 * 306.47095 * 11 9 4 37 37 H 1.09002 * 109.47187 * 66.47705 * 11 9 4 38 38 H 1.09007 * 109.46695 * 186.47122 * 11 9 4 39 39 H 0.97000 * 119.99860 * 324.99507 * 12 9 4 40 40 H 1.08996 * 109.47296 * 64.40235 * 16 13 12 41 41 H 1.09000 * 109.47348 * 304.39617 * 16 13 12 42 42 H 0.97006 * 119.99896 * 184.99855 * 21 20 18 43 43 H 1.08998 * 117.49840 * 214.99866 * 26 17 16 44 44 H 1.09000 * 117.50252 * 0.02603 * 26 17 16 45 45 H 1.09001 * 117.49858 * 359.97004 * 27 17 16 46 46 H 1.09005 * 117.50244 * 144.97601 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 3.5471 -0.7207 1.2496 7 8 4.1516 -1.7481 1.0525 8 8 4.2177 0.4211 1.4688 9 6 1.5300 -2.1637 1.2493 10 1 0.4434 -2.1649 1.3346 11 6 1.9400 -2.8496 -0.0555 12 7 2.1097 -2.8865 2.3841 13 16 1.2204 -4.0397 3.1727 14 8 -0.0078 -3.3910 3.4721 15 8 2.0791 -4.4967 4.2085 16 6 0.9677 -5.3414 1.9348 17 6 0.0574 -6.4261 2.5141 18 6 0.6309 -7.2082 3.6676 19 1 0.4309 -6.8983 4.6826 20 6 1.4061 -8.3228 3.4272 21 7 1.5731 -8.7545 2.1961 22 14 2.2193 -9.2194 4.8498 23 1 1.1770 -9.7036 5.7903 24 1 2.9924 -10.3755 4.3291 25 1 3.1353 -8.2919 5.5609 26 6 -1.4481 -6.1537 2.5243 27 6 -0.8607 -7.1708 1.5427 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 5.1834 0.3718 1.4599 36 1 1.6065 -2.2492 -0.9019 37 1 3.0248 -2.9514 -0.0872 38 1 1.4808 -3.8369 -0.1068 39 1 3.0143 -2.6897 2.6735 40 1 1.9291 -5.7791 1.6663 41 1 0.5028 -4.9131 1.0468 42 1 2.0576 -9.5789 2.0328 43 1 -2.0238 -6.5401 3.3654 44 1 -1.7901 -5.2018 2.1180 45 1 -0.8165 -6.8875 0.4910 46 1 -1.0497 -8.2265 1.7377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572770379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:49 Heat of formation + Delta-G solvation = -150.486691 kcal Electronic energy + Delta-G solvation = -28857.257149 eV Core-core repulsion = 24874.740501 eV Total energy + Delta-G solvation = -3982.516648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02188 -37.83057 -36.72516 -36.36440 -36.20437 -35.09510 -34.49745 -31.98643 -29.84514 -28.60960 -27.98115 -27.15957 -25.41249 -23.05425 -22.01031 -21.14625 -19.99460 -19.58703 -18.74447 -18.29063 -17.15095 -16.79353 -16.44752 -16.21375 -15.77728 -15.05816 -14.76643 -14.59097 -14.36667 -13.98131 -13.77823 -13.71938 -13.45438 -13.14610 -12.81672 -12.51487 -12.45015 -12.21245 -11.99324 -11.92620 -11.77601 -11.57393 -11.35611 -11.26762 -11.18577 -11.08397 -11.01910 -10.88625 -10.86547 -10.64504 -10.55621 -10.41317 -10.23944 -10.05578 -9.65706 -9.23935 -9.01697 -8.48394 -8.05362 -6.08512 -4.20724 1.09389 2.00880 2.80710 3.35304 3.37799 3.40719 3.47064 4.22556 4.39342 4.41266 4.56253 4.61845 4.93140 4.96148 5.03444 5.08124 5.17577 5.20291 5.23761 5.27620 5.42910 5.46423 5.56888 5.61956 5.65361 5.69592 5.81795 5.89239 5.94081 6.04619 6.06371 6.17590 6.26422 6.30400 6.40922 6.57068 6.66138 6.76203 7.04388 7.26654 7.30803 7.50392 7.72194 7.83923 8.24071 8.84672 9.50381 10.97840 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.003873 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.895511 B = 7227.286121 C = 7821.877164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.155 4.155 4 C -0.081 4.081 5 H 0.115 0.885 6 C 0.483 3.517 7 O -0.499 6.499 8 O -0.514 6.514 9 C 0.161 3.839 10 H 0.106 0.894 11 C -0.198 4.198 12 N -1.125 6.125 13 S 2.604 3.396 14 O -0.974 6.974 15 O -0.951 6.951 16 C -0.553 4.553 17 C 0.037 3.963 18 C -0.514 4.514 19 H 0.067 0.933 20 C 0.080 3.920 21 N -0.875 5.875 22 Si 0.890 3.110 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.268 1.268 26 C -0.210 4.210 27 C -0.131 4.131 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.412 0.588 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.263 0.737 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 19.152 -8.019 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.212 4.212 4 C -0.102 4.102 5 H 0.133 0.867 6 C 0.325 3.675 7 O -0.386 6.386 8 O -0.326 6.326 9 C 0.053 3.947 10 H 0.124 0.876 11 C -0.256 4.256 12 N -0.883 5.883 13 S 2.702 3.298 14 O -0.964 6.964 15 O -0.941 6.941 16 C -0.686 4.686 17 C 0.035 3.965 18 C -0.551 4.551 19 H 0.085 0.915 20 C -0.125 4.125 21 N -0.510 5.510 22 Si 0.716 3.284 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.193 1.193 26 C -0.248 4.248 27 C -0.170 4.170 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.246 0.754 40 H 0.150 0.850 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.000 18.823 -7.317 20.220 hybrid contribution 1.719 -0.812 0.059 1.902 sum 2.719 18.011 -7.258 19.608 Atomic orbital electron populations 1.21949 0.93507 1.02984 1.02652 1.21203 0.97190 0.96517 0.95935 1.22014 1.02185 0.94857 1.02124 1.21541 0.87387 0.98730 1.02559 0.86692 1.23442 0.91554 0.80605 0.71853 1.90707 1.70340 1.33210 1.44327 1.84612 1.26518 1.37689 1.83773 1.20660 0.98401 0.88575 0.87088 0.87592 1.22834 1.05347 1.01358 0.96103 1.56131 1.29572 1.56336 1.46224 1.05196 0.73773 0.74719 0.76150 1.93490 1.45947 1.73734 1.83260 1.93554 1.66109 1.81290 1.53179 1.30098 1.10538 1.14226 1.13754 1.18302 0.85466 0.94598 0.98141 1.20488 1.31487 1.11969 0.91132 0.91484 1.24952 0.94942 0.96845 0.95735 1.69999 1.40462 1.21437 1.19102 0.86672 0.80084 0.78994 0.82616 1.19954 1.21171 1.19267 1.23216 0.98594 0.99871 1.03090 1.22494 1.04104 0.97221 0.93221 0.91844 0.91868 0.91583 0.89707 0.91329 0.92372 0.92160 0.73503 0.91465 0.89198 0.91377 0.75365 0.85049 0.88096 0.92764 0.89605 0.90788 0.91744 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 2 C -0.09 -0.70 2.03 -90.62 -0.18 -0.88 16 3 C -0.15 -1.05 8.68 37.16 0.32 -0.73 16 4 C -0.08 -0.82 1.97 -91.77 -0.18 -1.00 16 5 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 6 C 0.48 5.11 6.52 36.01 0.23 5.34 16 7 O -0.50 -6.67 13.01 -18.75 -0.24 -6.92 16 8 O -0.51 -3.93 11.04 -39.24 -0.43 -4.37 16 9 C 0.16 2.03 2.11 -67.93 -0.14 1.89 16 10 H 0.11 1.29 6.03 -51.93 -0.31 0.98 16 11 C -0.20 -2.38 8.81 37.16 0.33 -2.05 16 12 N -1.13 -17.83 5.12 -4.89 -0.03 -17.86 16 13 S 2.60 53.52 5.21 -107.50 -0.56 52.96 16 14 O -0.97 -21.00 17.39 -57.54 -1.00 -22.00 16 15 O -0.95 -23.40 17.68 -57.54 -1.02 -24.41 16 16 C -0.55 -11.68 5.38 37.16 0.20 -11.48 16 17 C 0.04 0.92 1.44 -155.66 -0.22 0.69 16 18 C -0.51 -14.29 8.17 -34.44 -0.28 -14.57 16 19 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 20 C 0.08 2.22 5.42 -17.82 -0.10 2.13 16 21 N -0.87 -24.44 12.53 55.43 0.69 -23.75 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.21 -4.64 9.96 -26.69 -0.27 -4.90 16 27 C -0.13 -3.02 9.04 -26.69 -0.24 -3.26 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.52 6.54 -51.93 -0.34 0.18 16 31 H 0.08 0.65 6.21 -51.93 -0.32 0.33 16 32 H 0.07 0.49 5.79 -51.93 -0.30 0.19 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.41 1.61 9.10 45.56 0.41 2.02 16 36 H 0.07 0.63 5.98 -51.93 -0.31 0.32 16 37 H 0.09 1.20 5.73 -51.93 -0.30 0.90 16 38 H 0.07 0.86 5.79 -51.93 -0.30 0.56 16 39 H 0.41 6.38 6.78 -34.47 -0.23 6.14 16 40 H 0.13 2.91 8.14 -51.93 -0.42 2.49 16 41 H 0.10 1.77 6.32 -51.92 -0.33 1.44 16 42 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 43 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.09 2.22 8.09 -51.93 -0.42 1.80 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -34.63 372.97 -8.29 -42.92 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.10 Total: 10.61 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: -0.20 Total: -29.63 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.67 Total: -41.61 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -2.70 Total: -57.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 53.52 SS G_CDS: -0.56 Total: 52.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.63 -8.29 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572770379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.568 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds