Wall clock time and date at job start Tue Mar 31 2020 18:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.53001 * 109.46826 * 119.99986 * 2 1 3 5 5 H 1.09002 * 109.47046 * 299.99481 * 4 2 1 6 6 C 1.50706 * 109.46725 * 180.02562 * 4 2 1 7 7 O 1.20821 * 120.00048 * 250.85203 * 6 4 2 8 8 O 1.34223 * 119.99869 * 70.85668 * 6 4 2 9 9 C 1.52998 * 109.47253 * 60.00086 * 4 2 1 10 10 H 1.08997 * 109.47109 * 295.23678 * 9 4 2 11 11 C 1.53002 * 109.46917 * 55.24114 * 9 4 2 12 12 N 1.46502 * 109.46739 * 175.24135 * 9 4 2 13 13 S 1.65602 * 119.99882 * 145.00440 * 12 9 4 14 14 O 1.42097 * 104.27368 * 308.92289 * 13 12 9 15 15 O 1.42097 * 104.27637 * 181.06690 * 13 12 9 16 16 C 1.81398 * 104.45000 * 64.99642 * 13 12 9 17 17 C 1.53000 * 109.46767 * 184.40129 * 16 13 12 18 18 C 1.50704 * 115.55128 * 294.05425 * 17 16 13 19 19 H 1.07999 * 120.00020 * 93.43835 * 18 17 16 20 20 C 1.37877 * 120.00007 * 273.16215 * 18 17 16 21 21 N 1.31517 * 119.99722 * 355.54999 * 20 18 17 22 22 Si 1.86793 * 119.99937 * 175.54606 * 20 18 17 23 23 H 1.48498 * 109.47203 * 60.00726 * 22 20 18 24 24 H 1.48504 * 109.46802 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47420 * 300.00184 * 22 20 18 26 26 C 1.53001 * 117.49906 * 79.72521 * 17 16 13 27 27 C 1.53002 * 117.49803 * 148.38593 * 17 16 13 28 28 H 1.08991 * 109.47168 * 300.00075 * 1 2 3 29 29 H 1.08997 * 109.46913 * 60.00512 * 1 2 3 30 30 H 1.09003 * 109.46578 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46885 * 239.99566 * 2 1 3 32 32 H 1.08993 * 109.47386 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46614 * 300.00010 * 3 2 1 34 34 H 1.09004 * 109.46927 * 59.99644 * 3 2 1 35 35 H 0.96703 * 117.00285 * 179.97438 * 8 6 4 36 36 H 1.09003 * 109.47061 * 306.47095 * 11 9 4 37 37 H 1.09002 * 109.47187 * 66.47705 * 11 9 4 38 38 H 1.09007 * 109.46695 * 186.47122 * 11 9 4 39 39 H 0.97000 * 119.99860 * 324.99507 * 12 9 4 40 40 H 1.08996 * 109.47296 * 64.40235 * 16 13 12 41 41 H 1.09000 * 109.47348 * 304.39617 * 16 13 12 42 42 H 0.97006 * 119.99896 * 184.99855 * 21 20 18 43 43 H 1.08998 * 117.49840 * 214.99866 * 26 17 16 44 44 H 1.09000 * 117.50252 * 0.02603 * 26 17 16 45 45 H 1.09001 * 117.49858 * 359.97004 * 27 17 16 46 46 H 1.09005 * 117.50244 * 144.97601 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 3.5471 -0.7207 1.2496 7 8 4.1516 -1.7481 1.0525 8 8 4.2177 0.4211 1.4688 9 6 1.5300 -2.1637 1.2493 10 1 0.4434 -2.1649 1.3346 11 6 1.9400 -2.8496 -0.0555 12 7 2.1097 -2.8865 2.3841 13 16 1.2204 -4.0397 3.1727 14 8 -0.0078 -3.3910 3.4721 15 8 2.0791 -4.4967 4.2085 16 6 0.9677 -5.3414 1.9348 17 6 0.0574 -6.4261 2.5141 18 6 0.6309 -7.2082 3.6676 19 1 0.4309 -6.8983 4.6826 20 6 1.4061 -8.3228 3.4272 21 7 1.5731 -8.7545 2.1961 22 14 2.2193 -9.2194 4.8498 23 1 1.1770 -9.7036 5.7903 24 1 2.9924 -10.3755 4.3291 25 1 3.1353 -8.2919 5.5609 26 6 -1.4481 -6.1537 2.5243 27 6 -0.8607 -7.1708 1.5427 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 5.1834 0.3718 1.4599 36 1 1.6065 -2.2492 -0.9019 37 1 3.0248 -2.9514 -0.0872 38 1 1.4808 -3.8369 -0.1068 39 1 3.0143 -2.6897 2.6735 40 1 1.9291 -5.7791 1.6663 41 1 0.5028 -4.9131 1.0468 42 1 2.0576 -9.5789 2.0328 43 1 -2.0238 -6.5401 3.3654 44 1 -1.7901 -5.2018 2.1180 45 1 -0.8165 -6.8875 0.4910 46 1 -1.0497 -8.2265 1.7377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572770379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:48 Heat of formation + Delta-G solvation = -175.796294 kcal Electronic energy + Delta-G solvation = -28858.354656 eV Core-core repulsion = 24874.740501 eV Total energy + Delta-G solvation = -3983.614155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.83604 -38.69444 -38.54032 -37.91315 -37.12295 -36.83080 -35.45583 -34.07096 -30.88589 -30.00936 -29.01645 -27.81366 -27.45815 -23.95601 -22.94771 -22.73331 -21.55315 -20.71059 -20.18030 -19.18543 -18.49102 -18.33810 -17.80443 -17.28810 -16.86518 -16.67903 -16.52073 -16.10997 -15.59143 -15.25037 -14.95508 -14.88732 -14.53057 -14.21466 -13.83410 -13.64731 -13.52501 -13.32202 -13.27142 -13.13982 -12.97807 -12.93678 -12.92185 -12.85794 -12.70113 -12.62211 -12.44568 -12.35406 -12.17483 -11.85921 -11.71226 -11.58404 -11.55242 -11.39440 -11.09874 -10.97743 -10.56587 -10.47418 -9.86519 -8.18541 -6.34584 -0.52981 1.21092 1.35906 1.40308 1.47886 1.95124 2.12976 2.38493 2.92266 3.06955 3.30457 3.40488 3.47256 3.70584 3.95826 3.98819 4.12826 4.20366 4.28202 4.33667 4.41244 4.49115 4.57474 4.57767 4.65630 4.74748 4.83581 4.93341 4.95347 5.01146 5.10107 5.14062 5.21560 5.25129 5.26663 5.38912 5.47438 5.53250 5.55689 5.66455 5.70808 5.74440 6.05065 6.22600 6.71895 7.03561 7.37515 8.86996 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.003873 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.895511 B = 7227.286121 C = 7821.877164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.081 4.081 5 H 0.122 0.878 6 C 0.487 3.513 7 O -0.532 6.532 8 O -0.504 6.504 9 C 0.149 3.851 10 H 0.114 0.886 11 C -0.197 4.197 12 N -1.114 6.114 13 S 2.621 3.379 14 O -0.985 6.985 15 O -1.000 7.000 16 C -0.550 4.550 17 C 0.003 3.997 18 C -0.533 4.533 19 H 0.047 0.953 20 C 0.040 3.960 21 N -0.892 5.892 22 Si 0.932 3.068 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.279 1.279 26 C -0.195 4.195 27 C -0.128 4.128 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.423 0.577 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.414 0.586 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.265 0.735 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 21.055 -9.392 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.102 4.102 5 H 0.139 0.861 6 C 0.330 3.670 7 O -0.422 6.422 8 O -0.318 6.318 9 C 0.042 3.958 10 H 0.132 0.868 11 C -0.255 4.255 12 N -0.874 5.874 13 S 2.718 3.282 14 O -0.975 6.975 15 O -0.990 6.990 16 C -0.682 4.682 17 C 0.000 4.000 18 C -0.570 4.570 19 H 0.066 0.934 20 C -0.162 4.162 21 N -0.528 5.528 22 Si 0.757 3.243 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.205 1.205 26 C -0.232 4.232 27 C -0.167 4.167 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.285 0.715 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.250 0.750 40 H 0.134 0.866 41 H 0.156 0.844 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.587 20.739 -8.688 22.492 hybrid contribution 1.857 -1.285 0.462 2.305 sum 2.443 19.454 -8.225 21.262 Atomic orbital electron populations 1.21990 0.92965 1.02926 1.03481 1.21213 0.97557 0.96872 0.94641 1.21992 1.01961 0.94141 1.02826 1.21570 0.87308 0.97134 1.04216 0.86057 1.23514 0.91836 0.80604 0.71035 1.90708 1.71012 1.34431 1.46057 1.84568 1.28076 1.36168 1.82966 1.21019 0.98874 0.89913 0.85982 0.86797 1.22824 1.04444 1.01435 0.96845 1.55741 1.29348 1.55237 1.47070 1.04426 0.73338 0.74759 0.75666 1.93464 1.46633 1.73812 1.83604 1.93485 1.67294 1.82458 1.55752 1.29982 1.09414 1.13627 1.15207 1.18435 0.87149 0.96125 0.98251 1.20702 1.32020 1.12756 0.91542 0.93448 1.25512 0.95465 0.97619 0.97633 1.70046 1.41021 1.21763 1.19953 0.86008 0.79378 0.78264 0.80631 1.19115 1.19749 1.20469 1.23267 0.96731 1.00712 1.02525 1.22430 1.03662 0.96173 0.94440 0.91801 0.90369 0.92069 0.89324 0.91658 0.91108 0.92064 0.71492 0.88514 0.90550 0.92198 0.74994 0.86551 0.84448 0.92631 0.90108 0.87935 0.89407 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.84 71.98 0.64 -1.19 16 2 C -0.08 -1.07 2.03 -10.79 -0.02 -1.09 16 3 C -0.15 -1.63 8.68 71.98 0.62 -1.00 16 4 C -0.08 -1.47 1.97 -11.54 -0.02 -1.50 16 5 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 6 C 0.49 9.48 6.52 71.24 0.46 9.95 16 7 O -0.53 -13.76 13.01 21.98 0.29 -13.48 16 8 O -0.50 -6.65 11.04 -51.34 -0.57 -7.22 16 9 C 0.15 3.49 2.11 44.99 0.09 3.59 16 10 H 0.11 2.51 6.03 -2.39 -0.01 2.49 16 11 C -0.20 -4.37 8.81 71.98 0.63 -3.73 16 12 N -1.11 -34.52 5.12 -169.39 -0.87 -35.38 16 13 S 2.62 107.31 5.21 -56.49 -0.29 107.02 16 14 O -0.99 -41.54 17.39 -127.65 -2.22 -43.76 16 15 O -1.00 -50.37 17.68 -127.65 -2.26 -52.62 16 16 C -0.55 -22.90 5.38 71.98 0.39 -22.51 16 17 C 0.00 0.13 1.44 -52.93 -0.08 0.05 16 18 C -0.53 -30.20 8.17 25.60 0.21 -29.99 16 19 H 0.05 2.79 7.82 -2.91 -0.02 2.76 16 20 C 0.04 2.27 5.42 84.65 0.46 2.73 16 21 N -0.89 -50.23 12.53 21.45 0.27 -49.96 16 22 Si 0.93 45.27 29.54 68.60 2.03 47.29 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 26 C -0.20 -8.35 9.96 30.62 0.30 -8.05 16 27 C -0.13 -5.78 9.04 30.62 0.28 -5.50 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.78 6.54 -2.39 -0.02 0.76 16 31 H 0.09 1.08 6.21 -2.39 -0.01 1.06 16 32 H 0.06 0.75 5.79 -2.39 -0.01 0.73 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.42 2.49 9.10 -74.05 -0.67 1.81 16 36 H 0.10 1.53 5.98 -2.39 -0.01 1.52 16 37 H 0.08 1.95 5.73 -2.39 -0.01 1.94 16 38 H 0.06 1.40 5.79 -2.38 -0.01 1.39 16 39 H 0.41 12.76 6.78 -96.74 -0.66 12.10 16 40 H 0.12 5.21 8.14 -2.39 -0.02 5.19 16 41 H 0.14 4.55 6.32 -2.39 -0.02 4.53 16 42 H 0.26 14.21 8.32 -92.70 -0.77 13.44 16 43 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 45 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 46 H 0.07 3.30 8.09 -2.38 -0.02 3.29 16 Total: -1.00 -74.90 372.97 0.04 -74.86 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.31 Total: 31.50 kcal Atomic # 6 Polarization: -62.22 SS G_CDS: 3.97 Total: -58.25 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -0.60 Total: -85.34 kcal Atomic # 8 Polarization: -112.32 SS G_CDS: -4.76 Total: -117.08 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 107.31 SS G_CDS: -0.29 Total: 107.02 kcal Total: -74.90 0.04 -74.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572770379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.936 kcal (2) G-P(sol) polarization free energy of solvation -74.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds