Wall clock time and date at job start Tue Mar 31 2020 18:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47096 * 2 1 4 4 C 1.53004 * 109.47254 * 119.99488 * 2 1 3 5 5 H 1.08997 * 109.47442 * 298.38260 * 4 2 1 6 6 C 1.50698 * 109.47125 * 178.37933 * 4 2 1 7 7 O 1.20825 * 120.00103 * 240.00361 * 6 4 2 8 8 O 1.34232 * 119.99976 * 60.00095 * 6 4 2 9 9 C 1.53001 * 109.46558 * 58.38482 * 4 2 1 10 10 H 1.08999 * 109.47199 * 302.26539 * 9 4 2 11 11 C 1.52997 * 109.46863 * 182.27533 * 9 4 2 12 12 N 1.46496 * 109.47552 * 62.26853 * 9 4 2 13 13 S 1.65594 * 120.00328 * 214.99513 * 12 9 4 14 14 O 1.42104 * 104.27808 * 181.07316 * 13 12 9 15 15 O 1.42104 * 104.27950 * 308.93469 * 13 12 9 16 16 C 1.81402 * 104.44746 * 65.00278 * 13 12 9 17 17 C 1.53000 * 109.47067 * 173.83608 * 16 13 12 18 18 C 1.50697 * 115.54899 * 64.36961 * 17 16 13 19 19 H 1.07996 * 120.00128 * 269.41359 * 18 17 16 20 20 C 1.37883 * 120.00066 * 89.41458 * 18 17 16 21 21 N 1.31514 * 119.99694 * 180.60875 * 20 18 17 22 22 Si 1.86794 * 120.00008 * 0.60382 * 20 18 17 23 23 H 1.48503 * 109.47091 * 92.43900 * 22 20 18 24 24 H 1.48494 * 109.47320 * 212.43752 * 22 20 18 25 25 H 1.48500 * 109.47411 * 332.43610 * 22 20 18 26 26 C 1.52997 * 117.49953 * 278.69515 * 17 16 13 27 27 C 1.53005 * 117.49658 * 210.03574 * 17 16 13 28 28 H 1.09003 * 109.47257 * 184.00344 * 1 2 3 29 29 H 1.09008 * 109.47352 * 303.99755 * 1 2 3 30 30 H 1.09002 * 109.47617 * 64.00271 * 1 2 3 31 31 H 1.08994 * 109.47447 * 240.00125 * 2 1 3 32 32 H 1.08997 * 109.47429 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46724 * 300.00320 * 3 2 1 34 34 H 1.09002 * 109.46879 * 59.99415 * 3 2 1 35 35 H 0.96698 * 116.99892 * 179.97438 * 8 6 4 36 36 H 1.08995 * 109.47482 * 64.09946 * 11 9 4 37 37 H 1.09005 * 109.47539 * 184.10422 * 11 9 4 38 38 H 1.09006 * 109.46802 * 304.10092 * 11 9 4 39 39 H 0.97007 * 119.99723 * 35.00747 * 12 9 4 40 40 H 1.09000 * 109.47317 * 293.84354 * 16 13 12 41 41 H 1.09001 * 109.46945 * 53.83678 * 16 13 12 42 42 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 43 43 H 1.09002 * 117.50107 * 0.02562 * 26 17 16 44 44 H 1.09000 * 117.49554 * 145.02229 * 26 17 16 45 45 H 1.08999 * 117.49533 * 214.98273 * 27 17 16 46 46 H 1.08997 * 117.50128 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7006 -0.1908 2.1390 6 6 3.5464 -0.7560 1.2294 7 8 4.1263 -1.8161 1.2314 8 8 4.2441 0.3906 1.2093 9 6 1.4970 -2.1514 1.2698 10 1 0.4076 -2.1269 1.2436 11 6 1.9604 -2.8545 2.5472 12 7 1.9973 -2.8806 0.1019 13 16 1.0401 -4.0080 -0.6430 14 8 1.8496 -4.5150 -1.6951 15 8 0.6017 -4.8495 0.4149 16 6 -0.3483 -3.0515 -1.3124 17 6 -1.2339 -3.9648 -2.1625 18 6 -1.9202 -5.0810 -1.4182 19 1 -1.4381 -6.0425 -1.3222 20 6 -3.1639 -4.8746 -0.8598 21 7 -3.7576 -5.8450 -0.1999 22 14 -4.0053 -3.2167 -1.0403 23 1 -4.8789 -3.2331 -2.2411 24 1 -4.8274 -2.9448 0.1661 25 1 -2.9787 -2.1541 -1.1894 26 6 -0.7879 -4.2433 -3.5993 27 6 -1.9863 -3.3289 -3.3332 28 1 -0.3634 -1.0252 0.0717 29 1 -0.3634 0.5747 0.8520 30 1 -0.3634 0.4504 -0.9237 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 5.2082 0.3176 1.1974 36 1 1.5284 -2.3549 3.4142 37 1 1.6353 -3.8948 2.5278 38 1 3.0480 -2.8149 2.6096 39 1 2.8895 -2.7031 -0.2350 40 1 -0.9345 -2.6386 -0.4915 41 1 0.0345 -2.2391 -1.9301 42 1 -4.6324 -5.6998 0.1933 43 1 0.1366 -3.7763 -3.9389 44 1 -0.9913 -5.2338 -4.0063 45 1 -2.9776 -3.7182 -3.5652 46 1 -1.8508 -2.2600 -3.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572770380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:52 Heat of formation + Delta-G solvation = -142.410756 kcal Electronic energy + Delta-G solvation = -29552.198903 eV Core-core repulsion = 25570.032454 eV Total energy + Delta-G solvation = -3982.166449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04669 -37.80306 -37.16241 -36.45593 -36.26456 -35.11179 -34.23080 -32.16729 -30.26705 -28.73277 -27.87247 -27.21949 -25.52525 -23.08238 -21.77218 -21.53728 -20.16665 -19.76188 -18.87662 -18.26037 -17.29954 -16.75322 -16.56384 -16.17031 -15.80372 -15.25725 -15.11224 -14.41679 -14.36958 -14.16847 -13.88579 -13.67139 -13.10254 -13.01830 -12.96899 -12.67440 -12.66968 -12.43421 -12.33197 -12.18925 -11.84635 -11.46692 -11.39566 -11.27131 -11.18636 -11.11385 -11.01131 -10.97416 -10.94272 -10.68288 -10.59042 -10.35534 -10.26799 -10.14932 -9.70272 -9.27320 -9.17511 -8.67842 -8.44496 -6.16534 -4.24894 0.97256 1.96349 2.76378 3.20378 3.30596 3.32526 3.39602 4.19789 4.33546 4.35646 4.49876 4.68383 4.77262 4.87239 4.99922 5.05940 5.07311 5.12188 5.16066 5.28125 5.34456 5.49772 5.51267 5.61572 5.68431 5.74545 5.80042 5.90957 5.94687 5.99443 6.01898 6.08610 6.14897 6.18828 6.22550 6.33777 6.40658 6.57704 6.64669 6.86365 7.04554 7.30319 7.58440 7.67969 8.36819 8.88760 9.43626 10.94795 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.004922 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.330259 B = 5687.022438 C = 6102.279325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.090 4.090 3 C -0.157 4.157 4 C -0.085 4.085 5 H 0.121 0.879 6 C 0.484 3.516 7 O -0.499 6.499 8 O -0.511 6.511 9 C 0.165 3.835 10 H 0.101 0.899 11 C -0.184 4.184 12 N -1.121 6.121 13 S 2.612 3.388 14 O -0.969 6.969 15 O -0.936 6.936 16 C -0.579 4.579 17 C 0.004 3.996 18 C -0.509 4.509 19 H 0.087 0.913 20 C 0.088 3.912 21 N -0.882 5.882 22 Si 0.875 3.125 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.255 1.255 26 C -0.178 4.178 27 C -0.186 4.186 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.404 0.596 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.413 0.587 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.267 0.733 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.808 17.577 2.781 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.109 4.109 3 C -0.214 4.214 4 C -0.105 4.105 5 H 0.139 0.861 6 C 0.326 3.674 7 O -0.386 6.386 8 O -0.323 6.323 9 C 0.057 3.943 10 H 0.118 0.882 11 C -0.243 4.243 12 N -0.880 5.880 13 S 2.707 3.293 14 O -0.959 6.959 15 O -0.925 6.925 16 C -0.710 4.710 17 C 0.001 3.999 18 C -0.546 4.546 19 H 0.105 0.895 20 C -0.117 4.117 21 N -0.517 5.517 22 Si 0.702 3.298 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.179 1.179 26 C -0.215 4.215 27 C -0.224 4.224 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.249 0.751 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.389 16.273 2.960 20.081 hybrid contribution 0.019 1.600 -0.243 1.619 sum 11.407 17.873 2.717 21.376 Atomic orbital electron populations 1.22145 0.93712 1.03219 1.02919 1.21117 0.96962 0.96591 0.96234 1.22092 1.02750 0.94658 1.01889 1.21641 0.87319 0.98999 1.02557 0.86133 1.23436 0.91294 0.81125 0.71498 1.90702 1.71724 1.31436 1.44762 1.84653 1.25787 1.36493 1.85390 1.20642 0.98561 0.87991 0.87090 0.88170 1.22551 1.03476 1.02873 0.95404 1.56121 1.29516 1.61126 1.41284 1.05055 0.75158 0.74622 0.74498 1.93517 1.66930 1.77286 1.58206 1.93587 1.82356 1.62423 1.54164 1.30414 1.17467 1.11957 1.11151 1.18834 0.98198 0.96320 0.86501 1.20348 1.02934 0.96956 1.34351 0.89536 1.24967 0.96751 0.96435 0.93547 1.69897 1.15474 1.32333 1.33980 0.86916 0.80047 0.85461 0.77334 1.20304 1.21911 1.17883 1.23041 0.97098 1.00748 1.00629 1.22974 0.96985 0.96832 1.05642 0.91521 0.91881 0.91568 0.90161 0.90446 0.92534 0.92465 0.73709 0.92254 0.89974 0.90530 0.75110 0.85735 0.87406 0.92313 0.90071 0.88676 0.89038 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.92 37.15 0.33 -1.24 16 2 C -0.09 -0.81 2.34 -90.62 -0.21 -1.03 16 3 C -0.16 -1.18 8.73 37.16 0.32 -0.85 16 4 C -0.08 -0.80 1.78 -91.77 -0.16 -0.96 16 5 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 6 C 0.48 4.71 6.89 36.00 0.25 4.96 16 7 O -0.50 -6.35 12.82 -18.75 -0.24 -6.59 16 8 O -0.51 -3.42 10.41 -39.26 -0.41 -3.83 16 9 C 0.17 2.10 1.98 -67.93 -0.13 1.97 16 10 H 0.10 1.24 5.44 -51.93 -0.28 0.95 16 11 C -0.18 -2.44 9.27 37.16 0.34 -2.10 16 12 N -1.12 -16.79 4.46 -4.89 -0.02 -16.81 16 13 S 2.61 51.66 5.10 -107.50 -0.55 51.11 16 14 O -0.97 -21.32 18.08 -57.54 -1.04 -22.36 16 15 O -0.94 -22.24 16.69 -57.54 -0.96 -23.20 16 16 C -0.58 -10.84 4.51 37.16 0.17 -10.67 16 17 C 0.00 0.09 0.80 -155.66 -0.12 -0.03 16 18 C -0.51 -14.02 8.75 -34.44 -0.30 -14.32 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 20 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 21 N -0.88 -26.46 13.96 55.43 0.77 -25.68 16 22 Si 0.88 20.47 24.74 -169.99 -4.21 16.26 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.25 -5.34 5.89 56.52 0.33 -5.01 16 26 C -0.18 -3.63 9.96 -26.69 -0.27 -3.90 16 27 C -0.19 -3.76 7.34 -26.69 -0.20 -3.95 16 28 H 0.07 0.75 3.27 -51.93 -0.17 0.58 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.77 7.72 -51.93 -0.40 0.37 16 32 H 0.08 0.57 5.36 -51.93 -0.28 0.29 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 1.24 9.10 45.56 0.41 1.65 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.31 7.37 -51.93 -0.38 0.92 16 38 H 0.08 1.03 5.64 -51.93 -0.29 0.73 16 39 H 0.41 5.86 6.65 -34.47 -0.23 5.63 16 40 H 0.12 2.22 5.11 -51.92 -0.27 1.96 16 41 H 0.11 1.60 8.10 -51.92 -0.42 1.18 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 45 H 0.09 1.94 6.89 -51.93 -0.36 1.58 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -35.91 363.40 -7.35 -43.26 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.10 Total: 12.14 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -0.08 Total: -29.77 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.75 Total: -42.50 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -2.65 Total: -55.99 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.21 Total: 16.26 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.55 Total: 51.11 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.91 -7.35 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572770380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.151 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds