Wall clock time and date at job start Tue Mar 31 2020 18:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47096 * 2 1 4 4 C 1.53004 * 109.47254 * 119.99488 * 2 1 3 5 5 H 1.08997 * 109.47442 * 298.38260 * 4 2 1 6 6 C 1.50698 * 109.47125 * 178.37933 * 4 2 1 7 7 O 1.20825 * 120.00103 * 240.00361 * 6 4 2 8 8 O 1.34232 * 119.99976 * 60.00095 * 6 4 2 9 9 C 1.53001 * 109.46558 * 58.38482 * 4 2 1 10 10 H 1.08999 * 109.47199 * 302.26539 * 9 4 2 11 11 C 1.52997 * 109.46863 * 182.27533 * 9 4 2 12 12 N 1.46496 * 109.47552 * 62.26853 * 9 4 2 13 13 S 1.65594 * 120.00328 * 214.99513 * 12 9 4 14 14 O 1.42104 * 104.27808 * 181.07316 * 13 12 9 15 15 O 1.42104 * 104.27950 * 308.93469 * 13 12 9 16 16 C 1.81402 * 104.44746 * 65.00278 * 13 12 9 17 17 C 1.53000 * 109.47067 * 173.83608 * 16 13 12 18 18 C 1.50697 * 115.54899 * 64.36961 * 17 16 13 19 19 H 1.07996 * 120.00128 * 269.41359 * 18 17 16 20 20 C 1.37883 * 120.00066 * 89.41458 * 18 17 16 21 21 N 1.31514 * 119.99694 * 180.60875 * 20 18 17 22 22 Si 1.86794 * 120.00008 * 0.60382 * 20 18 17 23 23 H 1.48503 * 109.47091 * 92.43900 * 22 20 18 24 24 H 1.48494 * 109.47320 * 212.43752 * 22 20 18 25 25 H 1.48500 * 109.47411 * 332.43610 * 22 20 18 26 26 C 1.52997 * 117.49953 * 278.69515 * 17 16 13 27 27 C 1.53005 * 117.49658 * 210.03574 * 17 16 13 28 28 H 1.09003 * 109.47257 * 184.00344 * 1 2 3 29 29 H 1.09008 * 109.47352 * 303.99755 * 1 2 3 30 30 H 1.09002 * 109.47617 * 64.00271 * 1 2 3 31 31 H 1.08994 * 109.47447 * 240.00125 * 2 1 3 32 32 H 1.08997 * 109.47429 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46724 * 300.00320 * 3 2 1 34 34 H 1.09002 * 109.46879 * 59.99415 * 3 2 1 35 35 H 0.96698 * 116.99892 * 179.97438 * 8 6 4 36 36 H 1.08995 * 109.47482 * 64.09946 * 11 9 4 37 37 H 1.09005 * 109.47539 * 184.10422 * 11 9 4 38 38 H 1.09006 * 109.46802 * 304.10092 * 11 9 4 39 39 H 0.97007 * 119.99723 * 35.00747 * 12 9 4 40 40 H 1.09000 * 109.47317 * 293.84354 * 16 13 12 41 41 H 1.09001 * 109.46945 * 53.83678 * 16 13 12 42 42 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 43 43 H 1.09002 * 117.50107 * 0.02562 * 26 17 16 44 44 H 1.09000 * 117.49554 * 145.02229 * 26 17 16 45 45 H 1.08999 * 117.49533 * 214.98273 * 27 17 16 46 46 H 1.08997 * 117.50128 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7006 -0.1908 2.1390 6 6 3.5464 -0.7560 1.2294 7 8 4.1263 -1.8161 1.2314 8 8 4.2441 0.3906 1.2093 9 6 1.4970 -2.1514 1.2698 10 1 0.4076 -2.1269 1.2436 11 6 1.9604 -2.8545 2.5472 12 7 1.9973 -2.8806 0.1019 13 16 1.0401 -4.0080 -0.6430 14 8 1.8496 -4.5150 -1.6951 15 8 0.6017 -4.8495 0.4149 16 6 -0.3483 -3.0515 -1.3124 17 6 -1.2339 -3.9648 -2.1625 18 6 -1.9202 -5.0810 -1.4182 19 1 -1.4381 -6.0425 -1.3222 20 6 -3.1639 -4.8746 -0.8598 21 7 -3.7576 -5.8450 -0.1999 22 14 -4.0053 -3.2167 -1.0403 23 1 -4.8789 -3.2331 -2.2411 24 1 -4.8274 -2.9448 0.1661 25 1 -2.9787 -2.1541 -1.1894 26 6 -0.7879 -4.2433 -3.5993 27 6 -1.9863 -3.3289 -3.3332 28 1 -0.3634 -1.0252 0.0717 29 1 -0.3634 0.5747 0.8520 30 1 -0.3634 0.4504 -0.9237 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 5.2082 0.3176 1.1974 36 1 1.5284 -2.3549 3.4142 37 1 1.6353 -3.8948 2.5278 38 1 3.0480 -2.8149 2.6096 39 1 2.8895 -2.7031 -0.2350 40 1 -0.9345 -2.6386 -0.4915 41 1 0.0345 -2.2391 -1.9301 42 1 -4.6324 -5.6998 0.1933 43 1 0.1366 -3.7763 -3.9389 44 1 -0.9913 -5.2338 -4.0063 45 1 -2.9776 -3.7182 -3.5652 46 1 -1.8508 -2.2600 -3.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572770380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:51 Heat of formation + Delta-G solvation = -171.496894 kcal Electronic energy + Delta-G solvation = -29553.460172 eV Core-core repulsion = 25570.032454 eV Total energy + Delta-G solvation = -3983.427719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80318 -38.87203 -38.61937 -37.90781 -37.15605 -36.78727 -35.13929 -34.27081 -31.33420 -30.19233 -28.73086 -27.94363 -27.52312 -23.92984 -23.37785 -22.32830 -21.42971 -20.89368 -20.37096 -19.12898 -18.60062 -18.42830 -17.75486 -17.11625 -16.95687 -16.84527 -16.66210 -15.88623 -15.51118 -15.19772 -14.97094 -14.79462 -14.58026 -14.49543 -14.01435 -13.85135 -13.75599 -13.51505 -13.23516 -13.19419 -12.96100 -12.95107 -12.87471 -12.71934 -12.69622 -12.41600 -12.33669 -12.21434 -12.02909 -11.84249 -11.62220 -11.59144 -11.55656 -11.44909 -11.12187 -10.98978 -10.66530 -10.55787 -10.09334 -8.28555 -6.43615 -0.56942 1.24807 1.39548 1.40027 1.55345 2.00117 2.15174 2.39043 2.88326 3.03423 3.17004 3.38515 3.41749 3.66828 3.78717 4.04402 4.07085 4.17868 4.28712 4.34719 4.37107 4.40925 4.45559 4.48619 4.60748 4.63106 4.81082 4.86224 4.92099 4.95607 5.01833 5.11344 5.17382 5.21303 5.25838 5.32807 5.41814 5.45497 5.52944 5.63092 5.64935 5.72447 6.16178 6.21971 6.68174 7.07828 7.29387 8.87762 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.004922 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.330259 B = 5687.022438 C = 6102.279325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.079 4.079 5 H 0.151 0.849 6 C 0.490 3.510 7 O -0.537 6.537 8 O -0.498 6.498 9 C 0.154 3.846 10 H 0.106 0.894 11 C -0.186 4.186 12 N -1.104 6.104 13 S 2.610 3.390 14 O -1.001 7.001 15 O -0.992 6.992 16 C -0.565 4.565 17 C -0.030 4.030 18 C -0.514 4.514 19 H 0.023 0.977 20 C 0.023 3.977 21 N -0.943 5.943 22 Si 0.937 3.063 23 H -0.268 1.268 24 H -0.296 1.296 25 H -0.204 1.204 26 C -0.179 4.179 27 C -0.164 4.164 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.422 0.578 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.418 0.582 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.268 0.732 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 23.054 1.962 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.108 4.108 3 C -0.209 4.209 4 C -0.099 4.099 5 H 0.168 0.832 6 C 0.334 3.666 7 O -0.427 6.427 8 O -0.312 6.312 9 C 0.047 3.953 10 H 0.124 0.876 11 C -0.244 4.244 12 N -0.867 5.867 13 S 2.708 3.292 14 O -0.991 6.991 15 O -0.982 6.982 16 C -0.698 4.698 17 C -0.032 4.032 18 C -0.551 4.551 19 H 0.041 0.959 20 C -0.175 4.175 21 N -0.581 5.581 22 Si 0.759 3.241 23 H -0.194 1.194 24 H -0.223 1.223 25 H -0.125 1.125 26 C -0.216 4.216 27 C -0.203 4.203 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.284 0.716 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.256 0.744 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.772 21.764 2.127 24.835 hybrid contribution 0.026 -0.185 0.030 0.189 sum 11.798 21.579 2.157 24.688 Atomic orbital electron populations 1.22206 0.93793 1.02378 1.04189 1.21130 0.96888 0.97413 0.95383 1.22050 1.02725 0.93485 1.02659 1.21612 0.87231 0.96613 1.04480 0.83179 1.23449 0.91532 0.81106 0.70521 1.90707 1.72428 1.32887 1.46691 1.84597 1.27337 1.34736 1.84529 1.20928 0.99148 0.89793 0.85452 0.87616 1.22549 1.03461 1.01145 0.97286 1.55628 1.29047 1.60309 1.41693 1.04711 0.75593 0.75181 0.73720 1.93459 1.67848 1.78784 1.59029 1.93529 1.83394 1.65262 1.55967 1.30220 1.15870 1.11942 1.11739 1.18751 1.00390 0.96701 0.87400 1.20435 1.03201 0.96540 1.34919 0.95868 1.26025 0.97444 1.01200 0.92859 1.70086 1.16241 1.35573 1.36232 0.85928 0.79811 0.81015 0.77333 1.19369 1.22298 1.12538 1.23118 0.98948 1.00759 0.98788 1.23100 0.96029 0.99141 1.02003 0.93280 0.90277 0.90756 0.90806 0.90461 0.92035 0.91478 0.71635 0.89358 0.93698 0.90817 0.74399 0.84357 0.82321 0.92318 0.87136 0.90450 0.90197 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 8.92 71.98 0.64 -1.75 16 2 C -0.09 -1.22 2.34 -10.79 -0.03 -1.25 16 3 C -0.15 -1.56 8.73 71.98 0.63 -0.93 16 4 C -0.08 -1.22 1.78 -11.54 -0.02 -1.24 16 5 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 6 C 0.49 8.18 6.89 71.24 0.49 8.67 16 7 O -0.54 -12.93 12.82 21.97 0.28 -12.65 16 8 O -0.50 -4.88 10.41 -51.44 -0.54 -5.41 16 9 C 0.15 3.65 1.98 44.99 0.09 3.74 16 10 H 0.11 2.40 5.44 -2.39 -0.01 2.39 16 11 C -0.19 -4.86 9.27 71.98 0.67 -4.20 16 12 N -1.10 -32.19 4.46 -169.40 -0.76 -32.94 16 13 S 2.61 104.32 5.10 -56.49 -0.29 104.03 16 14 O -1.00 -44.78 18.08 -127.65 -2.31 -47.09 16 15 O -0.99 -50.04 16.69 -127.65 -2.13 -52.17 16 16 C -0.57 -19.59 4.51 71.98 0.32 -19.26 16 17 C -0.03 -1.30 0.80 -52.93 -0.04 -1.34 16 18 C -0.51 -29.40 8.75 25.60 0.22 -29.17 16 19 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 20 C 0.02 1.34 5.47 84.66 0.46 1.81 16 21 N -0.94 -59.60 13.96 21.45 0.30 -59.30 16 22 Si 0.94 40.77 24.74 68.60 1.70 42.47 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.30 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.20 -7.15 5.89 99.48 0.59 -6.56 16 26 C -0.18 -6.97 9.96 30.62 0.30 -6.66 16 27 C -0.16 -5.96 7.34 30.62 0.22 -5.74 16 28 H 0.05 0.87 3.27 -2.39 -0.01 0.86 16 29 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.11 7.72 -2.39 -0.02 1.09 16 32 H 0.08 0.80 5.36 -2.39 -0.01 0.78 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.42 1.20 9.10 -74.06 -0.67 0.52 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.50 7.37 -2.38 -0.02 1.48 16 38 H 0.07 1.96 5.64 -2.38 -0.01 1.95 16 39 H 0.42 11.53 6.65 -96.74 -0.64 10.88 16 40 H 0.14 4.46 5.11 -2.39 -0.01 4.45 16 41 H 0.16 3.85 8.10 -2.39 -0.02 3.83 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 43 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.08 3.12 6.89 -2.39 -0.02 3.10 16 46 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -85.57 363.40 -0.18 -85.76 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.42 Total: 34.63 kcal Atomic # 6 Polarization: -61.29 SS G_CDS: 3.97 Total: -57.32 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -0.46 Total: -92.24 kcal Atomic # 8 Polarization: -112.63 SS G_CDS: -4.69 Total: -117.33 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.70 Total: 42.47 kcal Atomic # 16 Polarization: 104.32 SS G_CDS: -0.29 Total: 104.03 kcal Total: -85.57 -0.18 -85.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572770380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.740 kcal (2) G-P(sol) polarization free energy of solvation -85.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds