Wall clock time and date at job start Tue Mar 31 2020 18:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47444 * 2 1 4 4 C 1.53003 * 109.47377 * 120.00265 * 2 1 3 5 5 H 1.08999 * 109.46817 * 176.54997 * 4 2 1 6 6 C 1.50694 * 109.46888 * 296.54900 * 4 2 1 7 7 O 1.20829 * 119.99866 * 119.99681 * 6 4 2 8 8 O 1.34232 * 120.00432 * 299.99912 * 6 4 2 9 9 C 1.52998 * 109.46933 * 56.55287 * 4 2 1 10 10 H 1.09009 * 109.47015 * 294.22428 * 9 4 2 11 11 C 1.53004 * 109.46925 * 174.22985 * 9 4 2 12 12 N 1.46502 * 109.47402 * 54.22526 * 9 4 2 13 13 S 1.65597 * 119.99770 * 214.99998 * 12 9 4 14 14 O 1.42097 * 104.28028 * 308.92764 * 13 12 9 15 15 O 1.42106 * 104.27602 * 181.07192 * 13 12 9 16 16 C 1.81397 * 104.45070 * 65.00413 * 13 12 9 17 17 C 1.52999 * 109.47419 * 177.37340 * 16 13 12 18 18 C 1.50704 * 115.54724 * 305.45774 * 17 16 13 19 19 H 1.08004 * 120.00162 * 115.62585 * 18 17 16 20 20 C 1.37877 * 120.00056 * 295.34987 * 18 17 16 21 21 N 1.31515 * 120.00216 * 171.57665 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 351.58238 * 20 18 17 23 23 H 1.48498 * 109.47199 * 93.11081 * 22 20 18 24 24 H 1.48497 * 109.47401 * 213.10984 * 22 20 18 25 25 H 1.48504 * 109.47319 * 333.11312 * 22 20 18 26 26 C 1.53003 * 117.50294 * 91.12329 * 17 16 13 27 27 C 1.53002 * 117.50564 * 159.78709 * 17 16 13 28 28 H 1.09003 * 109.47009 * 299.99983 * 1 2 3 29 29 H 1.09006 * 109.47100 * 59.99638 * 1 2 3 30 30 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47009 * 240.00017 * 2 1 3 32 32 H 1.09005 * 109.47245 * 173.00051 * 3 2 1 33 33 H 1.09002 * 109.47296 * 293.00012 * 3 2 1 34 34 H 1.09003 * 109.47010 * 52.99884 * 3 2 1 35 35 H 0.96698 * 117.00225 * 179.97438 * 8 6 4 36 36 H 1.09002 * 109.47150 * 59.99907 * 11 9 4 37 37 H 1.09006 * 109.46736 * 179.97438 * 11 9 4 38 38 H 1.08995 * 109.46936 * 299.99473 * 11 9 4 39 39 H 0.96995 * 119.99431 * 35.00070 * 12 9 4 40 40 H 1.08993 * 109.47802 * 57.36832 * 16 13 12 41 41 H 1.08999 * 109.46832 * 297.36977 * 16 13 12 42 42 H 0.97000 * 119.99667 * 180.02562 * 21 20 18 43 43 H 1.08997 * 117.50052 * 215.00752 * 26 17 16 44 44 H 1.08996 * 117.49503 * 0.02895 * 26 17 16 45 45 H 1.08997 * 117.49026 * 359.97438 * 27 17 16 46 46 H 1.08992 * 117.49921 * 144.97056 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1282 -0.7751 1.2187 6 6 1.6087 0.0367 2.4781 7 8 0.9094 -0.5000 3.3045 8 8 2.0014 1.3081 2.6548 9 6 1.4604 -2.1366 1.2932 10 1 0.3799 -2.0827 1.4269 11 6 2.0810 -2.9057 2.4613 12 7 1.7633 -2.8277 0.0375 13 16 0.6729 -3.8968 -0.6030 14 8 0.3655 -4.7714 0.4739 15 8 1.3053 -4.3790 -1.7807 16 6 -0.7664 -2.8769 -1.0256 17 6 -1.8312 -3.7491 -1.6937 18 6 -1.3693 -4.5324 -2.8955 19 1 -1.3623 -5.6120 -2.8663 20 6 -0.9610 -3.8710 -4.0342 21 7 -0.4038 -4.5405 -5.0196 22 14 -1.1992 -2.0238 -4.1775 23 1 0.0283 -1.3289 -3.7131 24 1 -1.4638 -1.6672 -5.5945 25 1 -2.3514 -1.6067 -3.3386 26 6 -2.8832 -4.3960 -0.7905 27 6 -3.2695 -3.2274 -1.7007 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1228 1.4450 0.1252 33 1 1.7826 1.9189 -0.9460 34 1 1.5780 1.9912 0.8207 35 1 1.6992 1.7533 3.4583 36 1 1.8556 -2.3915 3.3956 37 1 1.6678 -3.9139 2.4929 38 1 3.1614 -2.9596 2.3277 39 1 2.6025 -2.6590 -0.4187 40 1 -0.4625 -2.0856 -1.7108 41 1 -1.1767 -2.4338 -0.1182 42 1 -0.1163 -4.0750 -5.8205 43 1 -3.2412 -5.3880 -1.0656 44 1 -2.8170 -4.1998 0.2796 45 1 -3.4571 -2.2629 -1.2289 46 1 -3.8814 -3.4503 -2.5746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572770381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:55 Heat of formation + Delta-G solvation = -139.371783 kcal Electronic energy + Delta-G solvation = -29715.558793 eV Core-core repulsion = 25733.524124 eV Total energy + Delta-G solvation = -3982.034669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04339 -37.87576 -37.09559 -36.43205 -36.22551 -35.07639 -34.34168 -32.17665 -30.36848 -28.92039 -27.64607 -27.18970 -25.46451 -23.30677 -21.82421 -21.64152 -19.90613 -19.69048 -18.85249 -18.22392 -17.37420 -16.66883 -16.60658 -16.19504 -15.77930 -15.32818 -14.95362 -14.57065 -14.43532 -14.20300 -13.87358 -13.80657 -13.43199 -13.10262 -12.75279 -12.64177 -12.58493 -12.49041 -12.36820 -11.98280 -11.69585 -11.51618 -11.30556 -11.24736 -11.11685 -11.07460 -11.03257 -10.98557 -10.83572 -10.67276 -10.61988 -10.48281 -10.38848 -10.15584 -9.63392 -9.40174 -9.09483 -8.73689 -8.39564 -6.15082 -4.20286 0.97148 1.96293 2.69059 3.12935 3.28821 3.34973 3.45114 4.18975 4.33914 4.38569 4.53450 4.63846 4.72977 4.83937 4.99306 5.02804 5.08747 5.12328 5.25518 5.29704 5.43927 5.45122 5.49851 5.55937 5.69154 5.74517 5.77013 5.89213 5.91809 5.94192 6.03405 6.13323 6.19734 6.21022 6.24782 6.26083 6.41046 6.46193 6.60401 6.85027 7.07883 7.19265 7.60068 7.64868 8.39887 8.90098 9.46630 10.96847 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.005281 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.753623 B = 5300.358094 C = 5842.148744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.086 4.086 5 H 0.117 0.883 6 C 0.490 3.510 7 O -0.507 6.507 8 O -0.509 6.509 9 C 0.166 3.834 10 H 0.092 0.908 11 C -0.178 4.178 12 N -1.128 6.128 13 S 2.615 3.385 14 O -0.965 6.965 15 O -0.917 6.917 16 C -0.588 4.588 17 C 0.004 3.996 18 C -0.515 4.515 19 H 0.086 0.914 20 C 0.101 3.899 21 N -0.869 5.869 22 Si 0.848 3.152 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.245 1.245 26 C -0.181 4.181 27 C -0.178 4.178 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.404 0.596 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.267 0.733 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 13.875 13.379 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.107 4.107 5 H 0.135 0.865 6 C 0.332 3.668 7 O -0.395 6.395 8 O -0.321 6.321 9 C 0.058 3.942 10 H 0.110 0.890 11 C -0.237 4.237 12 N -0.884 5.884 13 S 2.709 3.291 14 O -0.955 6.955 15 O -0.906 6.906 16 C -0.718 4.718 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.104 0.896 20 C -0.106 4.106 21 N -0.503 5.503 22 Si 0.674 3.326 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.168 1.168 26 C -0.218 4.218 27 C -0.217 4.217 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.247 0.753 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.550 12.548 13.040 18.928 hybrid contribution -0.205 2.204 0.060 2.214 sum 5.345 14.751 13.100 20.440 Atomic orbital electron populations 1.22393 0.94803 1.03707 1.02494 1.21166 0.96600 0.96917 0.96418 1.22039 1.01462 0.95002 1.02425 1.21565 1.03612 0.94302 0.91185 0.86505 1.23193 0.76645 0.79831 0.87128 1.90729 1.35327 1.68626 1.44821 1.84684 1.72287 1.27340 1.47745 1.20476 1.00436 0.88607 0.84648 0.88981 1.22462 1.00917 1.02392 0.97920 1.56277 1.34549 1.64165 1.33412 1.05037 0.75536 0.74571 0.73950 1.93514 1.85272 1.61284 1.55444 1.93670 1.72729 1.76447 1.47797 1.30519 1.19263 1.13887 1.08158 1.18806 0.85900 0.97491 0.97631 1.20311 1.45539 0.94395 0.94974 0.89623 1.24824 0.92725 0.97591 0.95414 1.69883 1.37056 1.36484 1.06855 0.87290 0.79917 0.87114 0.78246 1.20130 1.21255 1.16799 1.22969 1.05515 0.97907 0.95368 1.23049 1.00982 0.96102 1.01537 0.92706 0.91439 0.91015 0.88771 0.92306 0.92492 0.90920 0.73695 0.90527 0.90210 0.92428 0.75336 0.86304 0.87142 0.92341 0.88908 0.90272 0.91131 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 8.32 37.15 0.31 -1.77 16 2 C -0.09 -0.96 2.51 -90.62 -0.23 -1.19 16 3 C -0.15 -1.33 8.24 37.16 0.31 -1.02 16 4 C -0.09 -0.86 1.89 -91.77 -0.17 -1.04 16 5 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 6 C 0.49 4.90 6.14 36.00 0.22 5.12 16 7 O -0.51 -6.42 14.77 -18.75 -0.28 -6.70 16 8 O -0.51 -3.56 10.35 -39.26 -0.41 -3.97 16 9 C 0.17 2.12 1.27 -67.93 -0.09 2.04 16 10 H 0.09 1.24 5.72 -51.92 -0.30 0.94 16 11 C -0.18 -2.24 9.27 37.16 0.34 -1.90 16 12 N -1.13 -16.24 4.48 -4.89 -0.02 -16.26 16 13 S 2.61 52.47 5.09 -107.50 -0.55 51.92 16 14 O -0.97 -20.98 17.11 -57.54 -0.98 -21.97 16 15 O -0.92 -22.50 16.88 -57.54 -0.97 -23.47 16 16 C -0.59 -11.42 3.88 37.16 0.14 -11.28 16 17 C 0.00 0.10 0.93 -155.66 -0.14 -0.05 16 18 C -0.52 -14.13 7.72 -34.44 -0.27 -14.39 16 19 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 20 C 0.10 2.83 5.46 -17.82 -0.10 2.74 16 21 N -0.87 -26.15 13.96 55.43 0.77 -25.38 16 22 Si 0.85 20.03 25.06 -169.99 -4.26 15.77 16 23 H -0.28 -6.12 7.02 56.52 0.40 -5.72 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.24 -5.32 5.70 56.52 0.32 -5.00 16 26 C -0.18 -3.64 9.93 -26.69 -0.26 -3.91 16 27 C -0.18 -3.59 8.00 -26.69 -0.21 -3.80 16 28 H 0.05 0.59 7.33 -51.93 -0.38 0.21 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.93 2.15 -51.93 -0.11 0.82 16 31 H 0.09 1.01 7.46 -51.93 -0.39 0.62 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.60 5.81 -51.93 -0.30 0.30 16 35 H 0.40 1.28 9.10 45.56 0.41 1.69 16 36 H 0.08 0.94 6.03 -51.93 -0.31 0.62 16 37 H 0.08 1.16 7.43 -51.93 -0.39 0.78 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.41 4.97 8.64 -34.47 -0.30 4.68 16 40 H 0.12 2.26 4.69 -51.93 -0.24 2.02 16 41 H 0.11 1.76 5.91 -51.92 -0.31 1.45 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -35.41 360.95 -7.46 -42.87 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.06 Total: 12.19 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: -0.15 Total: -30.45 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.75 Total: -41.64 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -2.64 Total: -56.11 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.26 Total: 15.77 kcal Atomic # 16 Polarization: 52.47 SS G_CDS: -0.55 Total: 51.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.41 -7.46 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572770381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.504 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds