Wall clock time and date at job start Tue Mar 31 2020 18:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47444 * 2 1 4 4 C 1.53003 * 109.47377 * 120.00265 * 2 1 3 5 5 H 1.08999 * 109.46817 * 176.54997 * 4 2 1 6 6 C 1.50694 * 109.46888 * 296.54900 * 4 2 1 7 7 O 1.20829 * 119.99866 * 119.99681 * 6 4 2 8 8 O 1.34232 * 120.00432 * 299.99912 * 6 4 2 9 9 C 1.52998 * 109.46933 * 56.55287 * 4 2 1 10 10 H 1.09009 * 109.47015 * 294.22428 * 9 4 2 11 11 C 1.53004 * 109.46925 * 174.22985 * 9 4 2 12 12 N 1.46502 * 109.47402 * 54.22526 * 9 4 2 13 13 S 1.65597 * 119.99770 * 214.99998 * 12 9 4 14 14 O 1.42097 * 104.28028 * 308.92764 * 13 12 9 15 15 O 1.42106 * 104.27602 * 181.07192 * 13 12 9 16 16 C 1.81397 * 104.45070 * 65.00413 * 13 12 9 17 17 C 1.52999 * 109.47419 * 177.37340 * 16 13 12 18 18 C 1.50704 * 115.54724 * 305.45774 * 17 16 13 19 19 H 1.08004 * 120.00162 * 115.62585 * 18 17 16 20 20 C 1.37877 * 120.00056 * 295.34987 * 18 17 16 21 21 N 1.31515 * 120.00216 * 171.57665 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 351.58238 * 20 18 17 23 23 H 1.48498 * 109.47199 * 93.11081 * 22 20 18 24 24 H 1.48497 * 109.47401 * 213.10984 * 22 20 18 25 25 H 1.48504 * 109.47319 * 333.11312 * 22 20 18 26 26 C 1.53003 * 117.50294 * 91.12329 * 17 16 13 27 27 C 1.53002 * 117.50564 * 159.78709 * 17 16 13 28 28 H 1.09003 * 109.47009 * 299.99983 * 1 2 3 29 29 H 1.09006 * 109.47100 * 59.99638 * 1 2 3 30 30 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47009 * 240.00017 * 2 1 3 32 32 H 1.09005 * 109.47245 * 173.00051 * 3 2 1 33 33 H 1.09002 * 109.47296 * 293.00012 * 3 2 1 34 34 H 1.09003 * 109.47010 * 52.99884 * 3 2 1 35 35 H 0.96698 * 117.00225 * 179.97438 * 8 6 4 36 36 H 1.09002 * 109.47150 * 59.99907 * 11 9 4 37 37 H 1.09006 * 109.46736 * 179.97438 * 11 9 4 38 38 H 1.08995 * 109.46936 * 299.99473 * 11 9 4 39 39 H 0.96995 * 119.99431 * 35.00070 * 12 9 4 40 40 H 1.08993 * 109.47802 * 57.36832 * 16 13 12 41 41 H 1.08999 * 109.46832 * 297.36977 * 16 13 12 42 42 H 0.97000 * 119.99667 * 180.02562 * 21 20 18 43 43 H 1.08997 * 117.50052 * 215.00752 * 26 17 16 44 44 H 1.08996 * 117.49503 * 0.02895 * 26 17 16 45 45 H 1.08997 * 117.49026 * 359.97438 * 27 17 16 46 46 H 1.08992 * 117.49921 * 144.97056 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1282 -0.7751 1.2187 6 6 1.6087 0.0367 2.4781 7 8 0.9094 -0.5000 3.3045 8 8 2.0014 1.3081 2.6548 9 6 1.4604 -2.1366 1.2932 10 1 0.3799 -2.0827 1.4269 11 6 2.0810 -2.9057 2.4613 12 7 1.7633 -2.8277 0.0375 13 16 0.6729 -3.8968 -0.6030 14 8 0.3655 -4.7714 0.4739 15 8 1.3053 -4.3790 -1.7807 16 6 -0.7664 -2.8769 -1.0256 17 6 -1.8312 -3.7491 -1.6937 18 6 -1.3693 -4.5324 -2.8955 19 1 -1.3623 -5.6120 -2.8663 20 6 -0.9610 -3.8710 -4.0342 21 7 -0.4038 -4.5405 -5.0196 22 14 -1.1992 -2.0238 -4.1775 23 1 0.0283 -1.3289 -3.7131 24 1 -1.4638 -1.6672 -5.5945 25 1 -2.3514 -1.6067 -3.3386 26 6 -2.8832 -4.3960 -0.7905 27 6 -3.2695 -3.2274 -1.7007 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1228 1.4450 0.1252 33 1 1.7826 1.9189 -0.9460 34 1 1.5780 1.9912 0.8207 35 1 1.6992 1.7533 3.4583 36 1 1.8556 -2.3915 3.3956 37 1 1.6678 -3.9139 2.4929 38 1 3.1614 -2.9596 2.3277 39 1 2.6025 -2.6590 -0.4187 40 1 -0.4625 -2.0856 -1.7108 41 1 -1.1767 -2.4338 -0.1182 42 1 -0.1163 -4.0750 -5.8205 43 1 -3.2412 -5.3880 -1.0656 44 1 -2.8170 -4.1998 0.2796 45 1 -3.4571 -2.2629 -1.2289 46 1 -3.8814 -3.4503 -2.5746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572770381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:54 Heat of formation + Delta-G solvation = -167.771995 kcal Electronic energy + Delta-G solvation = -29716.790319 eV Core-core repulsion = 25733.524124 eV Total energy + Delta-G solvation = -3983.266195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80096 -38.87239 -38.68497 -37.89585 -37.12856 -36.77601 -35.29093 -34.27020 -31.43682 -30.39476 -28.53456 -28.10717 -27.39727 -24.13173 -23.25642 -22.71282 -21.38466 -20.67997 -20.40834 -18.95003 -18.74388 -18.52476 -17.54260 -17.27854 -17.02564 -16.83317 -16.53276 -15.92790 -15.52342 -15.38011 -15.11733 -14.87967 -14.72233 -14.46647 -14.23595 -14.04987 -13.64450 -13.50095 -13.29297 -13.09492 -12.92027 -12.85949 -12.84996 -12.71797 -12.64106 -12.52549 -12.29468 -12.18730 -12.07869 -11.90142 -11.74820 -11.69751 -11.60108 -11.39173 -11.28926 -10.93920 -10.67182 -10.58020 -10.16025 -8.26841 -6.37165 -0.58529 1.24058 1.27806 1.38549 1.51912 1.78828 2.30763 2.37572 2.91632 2.99792 3.19456 3.34900 3.40626 3.60978 3.79866 3.88221 3.97909 4.09931 4.17910 4.30435 4.34023 4.42057 4.44163 4.48060 4.59420 4.62707 4.68080 4.84607 4.89094 4.89932 4.94393 4.99164 5.07686 5.15324 5.20787 5.23534 5.35018 5.37191 5.48951 5.57420 5.63962 5.70013 6.12204 6.26547 6.70357 7.06170 7.33676 8.89993 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.005281 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.753623 B = 5300.358094 C = 5842.148744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.082 4.082 5 H 0.143 0.857 6 C 0.499 3.501 7 O -0.538 6.538 8 O -0.498 6.498 9 C 0.160 3.840 10 H 0.087 0.913 11 C -0.177 4.177 12 N -1.109 6.109 13 S 2.618 3.382 14 O -0.992 6.992 15 O -0.975 6.975 16 C -0.579 4.579 17 C -0.030 4.030 18 C -0.517 4.517 19 H 0.028 0.972 20 C 0.042 3.958 21 N -0.930 5.930 22 Si 0.901 3.099 23 H -0.251 1.251 24 H -0.293 1.293 25 H -0.208 1.208 26 C -0.178 4.178 27 C -0.158 4.158 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.424 0.576 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.425 0.575 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.266 0.734 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 18.088 15.510 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.103 4.103 5 H 0.160 0.840 6 C 0.342 3.658 7 O -0.429 6.429 8 O -0.311 6.311 9 C 0.052 3.948 10 H 0.105 0.895 11 C -0.236 4.236 12 N -0.870 5.870 13 S 2.714 3.286 14 O -0.981 6.981 15 O -0.964 6.964 16 C -0.710 4.710 17 C -0.033 4.033 18 C -0.554 4.554 19 H 0.047 0.953 20 C -0.159 4.159 21 N -0.567 5.567 22 Si 0.722 3.278 23 H -0.176 1.176 24 H -0.219 1.219 25 H -0.129 1.129 26 C -0.215 4.215 27 C -0.197 4.197 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.286 0.714 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.262 0.738 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.445 16.771 15.210 23.287 hybrid contribution -0.165 0.829 -0.507 0.985 sum 5.281 17.600 14.703 23.534 Atomic orbital electron populations 1.22439 0.95694 1.02767 1.03109 1.21206 0.95961 0.98065 0.96193 1.22007 1.02143 0.93672 1.02679 1.21489 1.04971 0.92328 0.91496 0.83986 1.23002 0.75918 0.80429 0.86457 1.90734 1.36799 1.69478 1.45839 1.84620 1.71683 1.25866 1.48963 1.20647 1.00599 0.90238 0.83280 0.89477 1.22444 1.02032 1.00928 0.98214 1.55676 1.33929 1.63470 1.33945 1.04530 0.76086 0.75188 0.72775 1.93477 1.85844 1.63132 1.55683 1.93604 1.74184 1.78488 1.50161 1.30380 1.17682 1.13062 1.09894 1.18737 0.87905 0.99484 0.97139 1.20374 1.45276 0.92402 0.97375 0.95344 1.25753 0.92150 1.03297 0.94706 1.70063 1.39626 1.39028 1.07951 0.86443 0.82188 0.80540 0.78585 1.17552 1.21929 1.12935 1.23084 1.03785 0.97790 0.96825 1.23113 0.97719 0.97641 1.01256 0.91853 0.91183 0.92499 0.89207 0.91244 0.92509 0.90390 0.71418 0.89931 0.92762 0.90548 0.73812 0.85431 0.82989 0.92458 0.90131 0.87388 0.87301 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.32 71.98 0.60 -2.96 16 2 C -0.10 -1.62 2.51 -10.79 -0.03 -1.65 16 3 C -0.15 -1.96 8.24 71.98 0.59 -1.36 16 4 C -0.08 -1.36 1.89 -11.54 -0.02 -1.38 16 5 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 6 C 0.50 8.11 6.14 71.23 0.44 8.55 16 7 O -0.54 -12.03 14.77 21.95 0.32 -11.70 16 8 O -0.50 -4.81 10.35 -51.43 -0.53 -5.34 16 9 C 0.16 3.69 1.27 44.99 0.06 3.75 16 10 H 0.09 2.12 5.72 -2.38 -0.01 2.11 16 11 C -0.18 -4.16 9.27 71.98 0.67 -3.49 16 12 N -1.11 -30.30 4.48 -169.37 -0.76 -31.06 16 13 S 2.62 104.95 5.09 -56.49 -0.29 104.67 16 14 O -0.99 -43.60 17.11 -127.65 -2.18 -45.78 16 15 O -0.97 -49.65 16.88 -127.65 -2.15 -51.80 16 16 C -0.58 -21.16 3.88 71.98 0.28 -20.88 16 17 C -0.03 -1.33 0.93 -52.93 -0.05 -1.38 16 18 C -0.52 -29.38 7.72 25.60 0.20 -29.18 16 19 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 20 C 0.04 2.40 5.46 84.65 0.46 2.86 16 21 N -0.93 -58.83 13.96 21.45 0.30 -58.53 16 22 Si 0.90 40.23 25.06 68.60 1.72 41.95 16 23 H -0.25 -10.14 7.02 99.48 0.70 -9.45 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.21 -7.95 5.70 99.48 0.57 -7.39 16 26 C -0.18 -6.89 9.93 30.62 0.30 -6.58 16 27 C -0.16 -5.88 8.00 30.62 0.24 -5.64 16 28 H 0.06 1.10 7.33 -2.39 -0.02 1.08 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.06 1.24 2.15 -2.39 -0.01 1.24 16 31 H 0.09 1.62 7.46 -2.39 -0.02 1.60 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.95 5.81 -2.39 -0.01 0.93 16 35 H 0.42 0.87 9.10 -74.06 -0.67 0.19 16 36 H 0.08 1.86 6.03 -2.39 -0.01 1.84 16 37 H 0.05 1.55 7.43 -2.38 -0.02 1.53 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.43 9.59 8.64 -96.75 -0.84 8.75 16 40 H 0.13 4.44 4.69 -2.39 -0.01 4.43 16 41 H 0.15 4.24 5.91 -2.39 -0.01 4.23 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 45 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -82.14 360.95 -0.46 -82.60 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.63 Total: 34.35 kcal Atomic # 6 Polarization: -63.09 SS G_CDS: 3.74 Total: -59.35 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -0.46 Total: -89.59 kcal Atomic # 8 Polarization: -110.09 SS G_CDS: -4.55 Total: -114.63 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.72 Total: 41.95 kcal Atomic # 16 Polarization: 104.95 SS G_CDS: -0.29 Total: 104.67 kcal Total: -82.14 -0.46 -82.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572770381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.168 kcal (2) G-P(sol) polarization free energy of solvation -82.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds