Wall clock time and date at job start Tue Mar 31 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46913 * 2 1 4 4 O 1.42897 * 109.47588 * 120.00503 * 2 1 3 5 5 C 1.53001 * 109.46706 * 240.01006 * 2 1 3 6 6 C 1.53004 * 109.46881 * 174.35530 * 5 2 1 7 7 H 1.08997 * 109.71328 * 56.75428 * 6 5 2 8 8 C 1.52882 * 109.61686 * 296.45000 * 6 5 2 9 9 O 1.42959 * 109.29553 * 188.11569 * 8 6 5 10 10 C 1.42962 * 114.16870 * 62.45511 * 9 8 6 11 11 C 1.53294 * 109.21855 * 297.41660 * 10 9 8 12 12 N 1.47151 * 109.68083 * 177.29092 * 6 5 2 13 13 S 1.65601 * 120.98261 * 350.28204 * 12 6 5 14 14 O 1.42105 * 104.27548 * 170.46856 * 13 12 6 15 15 O 1.42101 * 104.27593 * 42.61419 * 13 12 6 16 16 C 1.81395 * 104.44793 * 286.53980 * 13 12 6 17 17 C 1.53002 * 109.47182 * 173.72096 * 16 13 12 18 18 C 1.50702 * 115.54893 * 58.02885 * 17 16 13 19 19 H 1.07998 * 120.00282 * 271.95002 * 18 17 16 20 20 C 1.37883 * 119.99624 * 91.95238 * 18 17 16 21 21 N 1.31509 * 120.00039 * 4.10737 * 20 18 17 22 22 Si 1.86800 * 119.99731 * 184.11169 * 20 18 17 23 23 H 1.48494 * 109.46950 * 59.99540 * 22 20 18 24 24 H 1.48494 * 109.46845 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47133 * 299.99766 * 22 20 18 26 26 C 1.53003 * 117.49621 * 272.36389 * 17 16 13 27 27 C 1.53005 * 117.50022 * 203.70596 * 17 16 13 28 28 H 1.08996 * 109.47152 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46697 * 299.99166 * 1 2 3 30 30 H 1.08999 * 109.47626 * 59.99213 * 1 2 3 31 31 H 0.96703 * 113.99211 * 64.89102 * 4 2 1 32 32 H 1.09000 * 109.47562 * 54.35207 * 5 2 1 33 33 H 1.09002 * 109.46891 * 294.34984 * 5 2 1 34 34 H 1.09006 * 109.57958 * 68.10343 * 8 6 5 35 35 H 1.08999 * 109.41150 * 308.02478 * 8 6 5 36 36 H 1.08999 * 109.51280 * 177.49640 * 10 9 8 37 37 H 1.08990 * 109.51260 * 57.33603 * 10 9 8 38 38 H 1.09004 * 109.68462 * 292.57598 * 11 10 9 39 39 H 1.09005 * 109.68339 * 172.02596 * 11 10 9 40 40 H 1.08997 * 109.47364 * 293.71837 * 16 13 12 41 41 H 1.08996 * 109.46948 * 53.72230 * 16 13 12 42 42 H 0.96995 * 119.99783 * 185.00618 * 21 20 18 43 43 H 1.08998 * 117.49905 * 359.97438 * 26 17 16 44 44 H 1.08997 * 117.49866 * 145.02404 * 26 17 16 45 45 H 1.09000 * 117.49345 * 214.98141 * 27 17 16 46 46 H 1.08998 * 117.49463 * 359.97338 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7211 -1.2494 6 6 3.5633 -0.5993 -1.3224 7 1 4.0082 -0.9987 -0.4110 8 6 3.9539 0.8703 -1.4801 9 8 5.3573 0.9613 -1.7368 10 6 5.7725 0.3297 -2.9503 11 6 5.4765 -1.1719 -2.8645 12 7 4.0649 -1.3460 -2.4870 13 16 3.0685 -2.3472 -3.3514 14 8 3.8315 -2.6959 -4.4984 15 8 1.8563 -1.6157 -3.4725 16 6 2.8363 -3.7911 -2.2783 17 6 1.8014 -4.7293 -2.9026 18 6 2.1285 -5.2296 -4.2860 19 1 1.8300 -4.6572 -5.1519 20 6 2.8089 -6.4181 -4.4463 21 7 3.1013 -7.1550 -3.3971 22 14 3.3153 -6.9813 -6.1539 23 1 4.2142 -5.9683 -6.7629 24 1 4.0286 -8.2800 -6.0553 25 1 2.1062 -7.1431 -7.0007 26 6 0.3289 -4.4767 -2.5725 27 6 1.0540 -5.6805 -1.9657 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.7841 -1.6144 1.1959 32 1 1.5963 -0.2688 -2.1365 33 1 1.7615 -1.7738 -1.2004 34 1 3.7153 1.4119 -0.5647 35 1 3.4023 1.3042 -2.3141 36 1 6.8423 0.4824 -3.0926 37 1 5.2275 0.7608 -3.7900 38 1 6.1172 -1.6300 -2.1110 39 1 5.6575 -1.6377 -3.8333 40 1 3.7841 -4.3178 -2.1677 41 1 2.4861 -3.4637 -1.2994 42 1 3.6422 -7.9534 -3.5008 43 1 0.0975 -3.6425 -1.9104 44 1 -0.4033 -4.6728 -3.3558 45 1 0.7987 -6.6680 -2.3502 46 1 1.3000 -5.6382 -0.9047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577413078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:44 Heat of formation + Delta-G solvation = -158.624991 kcal Electronic energy + Delta-G solvation = -29616.732705 eV Core-core repulsion = 25633.863154 eV Total energy + Delta-G solvation = -3982.869551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.68917 -38.85070 -38.52310 -37.97562 -36.86465 -35.98181 -34.10178 -33.74136 -31.53320 -30.01905 -28.66035 -27.66271 -27.03273 -24.43319 -22.96843 -22.65198 -22.25038 -21.31610 -19.83698 -18.51626 -18.39314 -17.88419 -17.31351 -17.00854 -16.89003 -16.71168 -16.38308 -16.22788 -15.84409 -15.74372 -15.53416 -15.20566 -14.83200 -14.63427 -14.07231 -13.91036 -13.72442 -13.42702 -13.25584 -13.16139 -13.00250 -12.93950 -12.89611 -12.81298 -12.55344 -12.47042 -12.40054 -12.23648 -12.04323 -11.79740 -11.72510 -11.57466 -11.33216 -11.06870 -10.99255 -10.87800 -10.48883 -10.08189 -9.68181 -8.23687 -6.40396 -0.61187 1.34794 1.37626 1.46112 1.78621 2.36316 2.82650 2.92509 3.01393 3.26848 3.35603 3.41651 3.58757 3.70245 3.86408 3.89894 4.06131 4.10983 4.14795 4.18796 4.32494 4.37966 4.43407 4.48965 4.56037 4.63068 4.65307 4.66871 4.75609 4.81712 4.91182 4.95009 4.97801 5.07859 5.19690 5.23441 5.31720 5.36193 5.43258 5.57850 5.64024 5.67409 6.11052 6.17257 6.67006 6.84926 7.33141 8.82087 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.005230 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.949827 B = 5352.833776 C = 6677.507710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 H 0.115 0.885 4 O -0.574 6.574 5 C -0.194 4.194 6 C 0.122 3.878 7 H 0.096 0.904 8 C 0.053 3.947 9 O -0.386 6.386 10 C 0.052 3.948 11 C 0.071 3.929 12 N -1.007 6.007 13 S 2.621 3.379 14 O -0.993 6.993 15 O -0.976 6.976 16 C -0.553 4.553 17 C 0.005 3.995 18 C -0.538 4.538 19 H 0.046 0.954 20 C 0.044 3.956 21 N -0.891 5.891 22 Si 0.928 3.072 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.267 1.267 26 C -0.191 4.191 27 C -0.127 4.127 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.386 0.614 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.056 0.944 36 H 0.134 0.866 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.266 0.734 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 14.787 8.605 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.054 3.946 3 H 0.132 0.868 4 O -0.381 6.381 5 C -0.232 4.232 6 C 0.017 3.983 7 H 0.114 0.886 8 C -0.025 4.025 9 O -0.304 6.304 10 C -0.026 4.026 11 C -0.054 4.054 12 N -0.846 5.846 13 S 2.721 3.279 14 O -0.984 6.984 15 O -0.966 6.966 16 C -0.685 4.685 17 C 0.003 3.997 18 C -0.575 4.575 19 H 0.064 0.936 20 C -0.159 4.159 21 N -0.527 5.527 22 Si 0.753 3.247 23 H -0.202 1.202 24 H -0.196 1.196 25 H -0.192 1.192 26 C -0.228 4.228 27 C -0.166 4.166 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.262 15.446 8.022 17.450 hybrid contribution 0.069 -1.993 -0.997 2.229 sum 1.331 13.453 7.026 15.235 Atomic orbital electron populations 1.22471 0.95479 1.03079 1.03203 1.21902 0.93647 0.96783 0.82250 0.86755 1.86529 1.80850 1.27837 1.42923 1.23360 0.93818 1.03129 1.02923 1.21706 0.94456 0.93906 0.88262 0.88631 1.23078 0.81979 0.94340 1.03068 1.87918 1.23927 1.76630 1.41951 1.23051 1.02598 0.90168 0.86822 1.22354 0.80892 0.99239 1.02899 1.58001 1.22131 1.59658 1.44833 1.04549 0.73239 0.75234 0.74878 1.93446 1.71468 1.84949 1.48499 1.93482 1.47198 1.69512 1.86445 1.29995 1.08626 1.16424 1.13449 1.18378 0.87939 0.98442 0.94961 1.20697 1.39164 1.06776 0.90883 0.93620 1.25490 0.95018 0.95636 0.99754 1.70048 1.36537 1.15554 1.30515 0.86070 0.79176 0.77877 0.81617 1.20177 1.19577 1.19220 1.23231 0.95616 1.00487 1.03453 1.22408 1.03533 0.93912 0.96774 0.92313 0.90823 0.91174 0.76483 0.87109 0.91572 0.85434 0.92539 0.84873 0.92914 0.89260 0.88657 0.86814 0.84756 0.92505 0.87971 0.90438 0.91469 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 9.56 71.98 0.69 -2.44 16 2 C 0.11 2.04 3.45 30.59 0.11 2.14 16 3 H 0.11 1.72 6.46 -2.38 -0.02 1.71 16 4 O -0.57 -10.64 12.87 -148.98 -1.92 -12.55 16 5 C -0.19 -4.54 2.77 30.60 0.08 -4.46 16 6 C 0.12 2.93 3.10 44.83 0.14 3.07 16 7 H 0.10 2.14 7.77 -2.39 -0.02 2.13 16 8 C 0.05 1.13 5.77 71.94 0.42 1.54 16 9 O -0.39 -8.97 10.74 -148.98 -1.60 -10.57 16 10 C 0.05 1.13 6.99 72.08 0.50 1.63 16 11 C 0.07 1.88 6.70 86.35 0.58 2.46 16 12 N -1.01 -29.91 3.26 -490.08 -1.60 -31.51 16 13 S 2.62 102.69 4.45 -56.49 -0.25 102.44 16 14 O -0.99 -47.40 15.73 -127.65 -2.01 -49.41 16 15 O -0.98 -39.04 13.89 -127.65 -1.77 -40.82 16 16 C -0.55 -21.89 5.76 71.98 0.41 -21.47 16 17 C 0.00 0.23 1.63 -52.92 -0.09 0.15 16 18 C -0.54 -29.72 7.80 25.60 0.20 -29.52 16 19 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 20 C 0.04 2.43 5.41 84.66 0.46 2.89 16 21 N -0.89 -49.15 12.07 21.45 0.26 -48.89 16 22 Si 0.93 44.21 29.54 68.60 2.03 46.23 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.19 -7.83 9.94 30.62 0.30 -7.53 16 27 C -0.13 -5.62 8.92 30.62 0.27 -5.34 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.39 5.39 9.03 -74.06 -0.67 4.73 16 32 H 0.11 3.01 6.13 -2.39 -0.01 3.00 16 33 H 0.07 1.65 5.05 -2.39 -0.01 1.64 16 34 H 0.13 2.06 6.84 -2.38 -0.02 2.04 16 35 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 36 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.10 2.79 6.62 -2.38 -0.02 2.78 16 40 H 0.11 4.78 8.14 -2.39 -0.02 4.76 16 41 H 0.13 4.17 6.41 -2.39 -0.02 4.16 16 42 H 0.27 13.97 8.32 -92.71 -0.77 13.20 16 43 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 44 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 45 H 0.07 3.31 7.77 -2.39 -0.02 3.29 16 46 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -69.67 369.42 -2.46 -72.14 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.32 Total: 29.82 kcal Atomic # 6 Polarization: -60.97 SS G_CDS: 4.08 Total: -56.89 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.34 Total: -80.39 kcal Atomic # 8 Polarization: -106.05 SS G_CDS: -7.30 Total: -113.35 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 102.69 SS G_CDS: -0.25 Total: 102.44 kcal Total: -69.67 -2.46 -72.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577413078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.490 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds