Wall clock time and date at job start Tue Mar 31 2020 18:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46566 * 2 1 4 4 C 1.52998 * 109.47374 * 240.00544 * 2 1 3 5 5 C 1.53000 * 109.47181 * 64.44504 * 4 2 1 6 6 C 1.53007 * 109.46992 * 172.24553 * 5 4 2 7 7 C 1.53001 * 109.47080 * 52.24641 * 5 4 2 8 8 N 1.46503 * 109.47382 * 292.24652 * 5 4 2 9 9 S 1.65599 * 119.99918 * 186.19012 * 8 5 4 10 10 O 1.42106 * 104.27421 * 319.58587 * 9 8 5 11 11 O 1.42098 * 104.27345 * 191.73303 * 9 8 5 12 12 C 1.81390 * 104.45119 * 75.65985 * 9 8 5 13 13 C 1.53002 * 109.46983 * 182.37002 * 12 9 8 14 14 C 1.50696 * 115.54886 * 293.36584 * 13 12 9 15 15 H 1.08003 * 120.00019 * 118.97443 * 14 13 12 16 16 C 1.37879 * 120.00500 * 298.69863 * 14 13 12 17 17 N 1.31507 * 120.00256 * 173.05117 * 16 14 13 18 18 Si 1.86799 * 119.99548 * 353.05032 * 16 14 13 19 19 H 1.48496 * 109.47399 * 94.22651 * 18 16 14 20 20 H 1.48506 * 109.47048 * 214.22450 * 18 16 14 21 21 H 1.48500 * 109.47241 * 334.22357 * 18 16 14 22 22 C 1.52999 * 117.49926 * 79.04278 * 13 12 9 23 23 C 1.53005 * 117.49718 * 147.70210 * 13 12 9 24 24 C 1.50703 * 109.47219 * 119.99987 * 2 1 3 25 25 O 1.20827 * 119.99629 * 120.00467 * 24 2 1 26 26 O 1.34231 * 119.99976 * 300.00081 * 24 2 1 27 27 H 1.08998 * 109.47628 * 43.22712 * 1 2 3 28 28 H 1.09001 * 109.46626 * 163.22321 * 1 2 3 29 29 H 1.08996 * 109.46931 * 283.22216 * 1 2 3 30 30 H 1.08997 * 109.46741 * 304.44965 * 4 2 1 31 31 H 1.09000 * 109.47053 * 184.45074 * 4 2 1 32 32 H 1.09004 * 109.47075 * 194.12151 * 6 5 4 33 33 H 1.08999 * 109.46772 * 314.11722 * 6 5 4 34 34 H 1.08993 * 109.46776 * 74.11636 * 6 5 4 35 35 H 1.09002 * 109.46957 * 290.92291 * 7 5 4 36 36 H 1.08999 * 109.46832 * 50.92520 * 7 5 4 37 37 H 1.08997 * 109.47050 * 170.91976 * 7 5 4 38 38 H 0.97000 * 119.99455 * 6.18582 * 8 5 4 39 39 H 1.08999 * 109.47730 * 62.37074 * 12 9 8 40 40 H 1.09003 * 109.47125 * 302.36754 * 12 9 8 41 41 H 0.97003 * 120.00282 * 179.97438 * 17 16 14 42 42 H 1.09009 * 117.49092 * 215.00089 * 22 13 12 43 43 H 1.08996 * 117.49981 * 0.02562 * 22 13 12 44 44 H 1.08994 * 117.50357 * 359.97438 * 23 13 12 45 45 H 1.09004 * 117.49404 * 144.97469 * 23 13 12 46 46 H 0.96703 * 116.99538 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6235 0.0619 -2.4960 6 6 2.2932 -0.5483 -3.7289 7 6 2.0573 1.5218 -2.3499 8 7 0.1678 -0.0020 -2.6490 9 16 -0.5511 0.6297 -4.0004 10 8 0.1592 1.8363 -4.2437 11 8 -1.9365 0.6461 -3.6850 12 6 -0.2094 -0.5841 -5.3043 13 6 -0.7789 -0.0803 -6.6320 14 6 -2.2816 0.0085 -6.7027 15 1 -2.7587 0.9618 -6.8757 16 6 -3.0473 -1.1282 -6.5520 17 7 -4.3568 -1.0337 -6.4767 18 14 -2.2245 -2.8024 -6.4549 19 1 -2.0101 -3.1668 -5.0314 20 1 -3.0933 -3.8191 -7.1006 21 1 -0.9162 -2.7524 -7.1556 22 6 0.0277 0.9746 -7.3919 23 6 -0.0330 -0.4640 -7.9116 24 6 2.0324 -0.7104 1.2305 25 8 2.7271 -1.6927 1.1195 26 8 1.7081 -0.2518 2.4496 27 1 -0.3634 0.7488 -0.7038 28 1 -0.3632 -0.9840 -0.2966 29 1 -0.3633 0.2350 1.0004 30 1 1.6131 -1.7231 -1.2901 31 1 3.1272 -0.7907 -1.2102 32 1 2.2062 0.1415 -4.5684 33 1 3.3465 -0.7316 -3.5169 34 1 1.8039 -1.4895 -3.9797 35 1 1.4618 2.0019 -1.5734 36 1 3.1116 1.5618 -2.0762 37 1 1.9077 2.0417 -3.2962 38 1 -0.3747 -0.4143 -1.9587 39 1 -0.6753 -1.5352 -5.0466 40 1 0.8678 -0.7213 -5.3997 41 1 -4.8956 -1.8334 -6.3711 42 1 -0.5287 1.7329 -7.9429 43 1 0.9643 1.3094 -6.9462 44 1 0.8637 -1.0748 -7.8076 45 1 -0.6292 -0.6524 -8.8045 46 1 2.0536 -0.7411 3.2089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580317311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:49 Heat of formation + Delta-G solvation = -157.802823 kcal Electronic energy + Delta-G solvation = -29128.598123 eV Core-core repulsion = 25145.764224 eV Total energy + Delta-G solvation = -3982.833899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.54307 -39.64213 -38.79713 -37.87594 -37.08357 -36.73363 -34.39841 -34.30506 -32.01749 -30.35707 -28.23007 -27.81042 -27.26426 -25.71987 -23.22915 -22.21545 -21.12267 -20.75698 -20.13812 -19.04654 -18.61883 -18.45359 -17.67403 -17.37336 -16.88199 -16.81777 -16.59804 -15.85148 -15.52594 -15.28721 -14.98878 -14.93826 -14.71628 -14.49902 -14.06491 -13.93986 -13.75197 -13.49197 -13.17587 -13.09937 -13.01633 -12.87603 -12.68645 -12.60865 -12.59310 -12.49128 -12.38079 -12.29493 -12.11218 -11.98822 -11.92685 -11.72042 -11.56107 -11.42278 -11.23800 -10.97840 -10.69552 -10.51071 -10.09862 -8.31534 -6.40242 -0.50340 1.20987 1.24569 1.34954 1.48694 2.02980 2.11663 2.33266 2.91370 2.99802 3.25451 3.41342 3.56791 3.68450 3.83306 3.86477 4.05775 4.07669 4.17543 4.25375 4.34052 4.37627 4.48014 4.53217 4.64585 4.70919 4.77481 4.80331 4.88870 4.92298 4.97210 5.00803 5.08233 5.15130 5.20723 5.22042 5.23711 5.42182 5.51080 5.62027 5.62728 5.69897 6.15434 6.24031 6.67376 7.01135 7.29124 8.85216 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.004124 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.951859 B = 6787.734322 C = 7161.491074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 H 0.134 0.866 4 C -0.097 4.097 5 C 0.178 3.822 6 C -0.206 4.206 7 C -0.188 4.188 8 N -1.117 6.117 9 S 2.617 3.383 10 O -0.971 6.971 11 O -0.998 6.998 12 C -0.593 4.593 13 C -0.032 4.032 14 C -0.510 4.510 15 H 0.029 0.971 16 C 0.029 3.971 17 N -0.938 5.938 18 Si 0.910 3.090 19 H -0.261 1.261 20 H -0.291 1.291 21 H -0.207 1.207 22 C -0.175 4.175 23 C -0.163 4.163 24 C 0.490 3.510 25 O -0.547 6.547 26 O -0.512 6.512 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.420 0.580 39 H 0.112 0.888 40 H 0.165 0.835 41 H 0.267 0.733 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.317 -1.262 14.305 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.105 4.105 3 H 0.151 0.849 4 C -0.136 4.136 5 C 0.091 3.909 6 C -0.264 4.264 7 C -0.247 4.247 8 N -0.883 5.883 9 S 2.713 3.287 10 O -0.961 6.961 11 O -0.988 6.988 12 C -0.723 4.723 13 C -0.034 4.034 14 C -0.547 4.547 15 H 0.048 0.952 16 C -0.170 4.170 17 N -0.575 5.575 18 Si 0.733 3.267 19 H -0.186 1.186 20 H -0.218 1.218 21 H -0.128 1.128 22 C -0.212 4.212 23 C -0.202 4.202 24 C 0.334 3.666 25 O -0.437 6.437 26 O -0.326 6.326 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.262 0.738 39 H 0.130 0.870 40 H 0.183 0.817 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.099 0.901 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 18.796 -0.489 13.828 23.340 hybrid contribution -0.687 -1.723 0.485 1.917 sum 18.109 -2.212 14.313 23.188 Atomic orbital electron populations 1.22228 0.92631 1.03422 1.04450 1.21194 0.97997 1.02337 0.88958 0.84874 1.21786 1.03345 0.98667 0.89833 1.20291 0.77519 0.96734 0.96363 1.22931 1.04470 1.01923 0.97029 1.22779 1.02840 0.94393 1.04649 1.56432 1.16190 1.78532 1.37110 1.04546 0.72627 0.76388 0.75180 1.93452 1.73754 1.42905 1.85993 1.93549 1.34711 1.87422 1.83081 1.30669 1.11449 1.16262 1.13966 1.18740 0.92042 1.03817 0.88819 1.20497 0.88936 0.94524 1.50772 0.95237 1.25837 0.94849 1.03440 0.92881 1.70059 1.06801 1.30720 1.49951 0.86314 0.81857 0.78663 0.79912 1.18641 1.21780 1.12833 1.23086 1.01483 0.92323 1.04277 1.23153 1.01908 0.97337 0.97781 1.23634 0.75853 0.81654 0.85454 1.90715 1.37655 1.27517 1.87828 1.84510 1.71991 1.59043 1.17044 0.90309 0.91394 0.89983 0.90253 0.87724 0.91331 0.87058 0.90424 0.91785 0.88975 0.90356 0.73824 0.86963 0.81735 0.92395 0.90282 0.86786 0.87091 0.90114 0.71191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 7.55 71.98 0.54 -2.38 16 2 C -0.09 -1.32 2.43 -11.54 -0.03 -1.35 16 3 H 0.13 1.66 6.26 -2.38 -0.01 1.64 16 4 C -0.10 -1.54 3.34 30.59 0.10 -1.44 16 5 C 0.18 3.47 0.77 3.61 0.00 3.47 16 6 C -0.21 -3.52 6.81 71.98 0.49 -3.03 16 7 C -0.19 -3.64 7.16 71.98 0.52 -3.13 16 8 N -1.12 -29.38 4.14 -152.20 -0.63 -30.01 16 9 S 2.62 99.88 4.86 -56.49 -0.27 99.60 16 10 O -0.97 -37.39 14.55 -127.65 -1.86 -39.25 16 11 O -1.00 -50.11 17.61 -127.65 -2.25 -52.36 16 12 C -0.59 -21.71 4.74 71.98 0.34 -21.36 16 13 C -0.03 -1.40 0.78 -52.93 -0.04 -1.44 16 14 C -0.51 -29.35 8.69 25.60 0.22 -29.13 16 15 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 16 C 0.03 1.72 5.46 84.66 0.46 2.18 16 17 N -0.94 -60.01 13.96 21.45 0.30 -59.71 16 18 Si 0.91 41.66 24.82 68.60 1.70 43.36 16 19 H -0.26 -11.16 6.98 99.48 0.69 -10.47 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.21 -8.07 5.94 99.48 0.59 -7.48 16 22 C -0.17 -6.62 9.96 30.62 0.30 -6.32 16 23 C -0.16 -6.00 8.39 30.62 0.26 -5.74 16 24 C 0.49 8.12 7.62 71.24 0.54 8.66 16 25 O -0.55 -12.17 16.69 21.96 0.37 -11.80 16 26 O -0.51 -6.15 13.05 -51.43 -0.67 -6.83 16 27 H 0.08 1.57 6.24 -2.39 -0.01 1.56 16 28 H 0.07 1.16 7.04 -2.39 -0.02 1.14 16 29 H 0.08 1.25 7.72 -2.39 -0.02 1.23 16 30 H 0.08 1.33 8.07 -2.39 -0.02 1.31 16 31 H 0.10 1.38 7.85 -2.39 -0.02 1.36 16 32 H 0.07 1.28 6.40 -2.39 -0.02 1.26 16 33 H 0.11 1.24 7.98 -2.39 -0.02 1.22 16 34 H 0.08 1.29 6.99 -2.39 -0.02 1.27 16 35 H 0.06 1.21 6.72 -2.39 -0.02 1.20 16 36 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 37 H 0.08 1.94 5.58 -2.39 -0.01 1.93 16 38 H 0.42 10.19 4.87 -96.74 -0.47 9.72 16 39 H 0.11 4.21 4.62 -2.39 -0.01 4.19 16 40 H 0.17 4.36 4.51 -2.39 -0.01 4.35 16 41 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 43 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 44 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.43 1.66 9.10 -74.06 -0.67 0.99 16 Total: -1.00 -83.14 360.38 0.15 -82.99 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.25 Total: 34.99 kcal Atomic # 6 Polarization: -64.71 SS G_CDS: 3.71 Total: -61.00 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -0.33 Total: -89.72 kcal Atomic # 8 Polarization: -105.82 SS G_CDS: -4.41 Total: -110.23 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.70 Total: 43.36 kcal Atomic # 16 Polarization: 99.88 SS G_CDS: -0.27 Total: 99.60 kcal Total: -83.14 0.15 -82.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580317311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.814 kcal (2) G-P(sol) polarization free energy of solvation -83.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds