Wall clock time and date at job start Tue Mar 31 2020 18:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99537 * 2 1 4 4 O 1.20826 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00129 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.78132 * 61.78636 * 5 3 2 7 7 C 1.54328 * 110.71873 * 298.54318 * 5 3 2 8 8 N 1.47014 * 107.40256 * 219.52096 * 7 5 3 9 9 S 1.65600 * 125.64966 * 178.90106 * 8 7 5 10 10 O 1.42097 * 104.28147 * 206.04646 * 9 8 7 11 11 O 1.42096 * 104.27721 * 333.90430 * 9 8 7 12 12 C 1.81402 * 104.44973 * 89.97506 * 9 8 7 13 13 C 1.52999 * 109.47363 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.46786 * 300.00295 * 13 12 9 15 15 C 1.53004 * 109.47222 * 59.99625 * 13 12 9 16 16 C 1.50691 * 109.47439 * 179.97438 * 13 12 9 17 17 H 1.08001 * 119.99794 * 0.83658 * 16 13 12 18 18 C 1.37878 * 120.00433 * 180.83700 * 16 13 12 19 19 N 1.31514 * 120.00232 * 194.58080 * 18 16 13 20 20 Si 1.86807 * 119.99655 * 14.57559 * 18 16 13 21 21 H 1.48500 * 109.47054 * 84.45824 * 20 18 16 22 22 H 1.48502 * 109.46844 * 204.45702 * 20 18 16 23 23 H 1.48499 * 109.46950 * 324.45679 * 20 18 16 24 24 C 1.47422 * 108.70532 * 358.86455 * 8 7 5 25 25 C 1.54914 * 104.83296 * 24.12892 * 24 8 7 26 26 H 1.08997 * 111.00056 * 81.06346 * 25 24 8 27 27 C 1.52999 * 111.00375 * 204.87909 * 25 24 8 28 28 H 1.09002 * 109.46586 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47279 * 299.99269 * 1 2 3 30 30 H 1.08997 * 109.47618 * 60.00645 * 1 2 3 31 31 H 1.08997 * 109.87726 * 100.02820 * 7 5 3 32 32 H 1.09003 * 109.88313 * 339.01864 * 7 5 3 33 33 H 1.09000 * 109.47030 * 300.00466 * 12 9 8 34 34 H 1.09000 * 109.46897 * 60.00030 * 12 9 8 35 35 H 1.08993 * 109.47636 * 70.23388 * 14 13 12 36 36 H 1.09010 * 109.46763 * 190.22862 * 14 13 12 37 37 H 1.08994 * 109.47103 * 310.22521 * 14 13 12 38 38 H 1.09000 * 109.46627 * 60.00107 * 15 13 12 39 39 H 1.08998 * 109.47085 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47127 * 300.00430 * 15 13 12 41 41 H 0.97006 * 119.99581 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36871 * 142.96448 * 24 8 7 43 43 H 1.09001 * 110.36956 * 265.29306 * 24 8 7 44 44 H 1.08996 * 109.47334 * 58.54901 * 27 25 24 45 45 H 1.09003 * 109.46851 * 178.54637 * 27 25 24 46 46 H 1.08997 * 109.46839 * 298.53764 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 -0.0006 6 1 3.9773 0.8144 -0.8988 7 6 4.1481 0.6147 1.2671 8 7 5.2740 1.4454 1.7183 9 16 6.2057 1.1630 3.0579 10 8 6.6906 2.4474 3.4247 11 8 5.3567 0.4251 3.9261 12 6 7.5613 0.1193 2.4547 13 6 8.5024 -0.2148 3.6137 14 6 9.0750 1.0795 4.1950 15 6 7.7276 -0.9628 4.7005 16 6 9.6281 -1.0823 3.1128 17 1 9.6757 -1.3558 2.0690 18 6 10.5973 -1.5270 3.9868 19 7 11.7193 -2.0324 3.5228 20 14 10.3168 -1.4114 5.8300 21 1 9.5458 -2.5949 6.2885 22 1 11.6267 -1.3730 6.5286 23 1 9.5549 -0.1746 6.1381 24 6 5.4368 2.5710 0.7803 25 6 4.0428 2.7486 0.1282 26 1 3.3773 3.3171 0.7778 27 6 4.1606 3.4108 -1.2460 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 4.4993 -0.3904 1.0335 32 1 3.3857 0.5694 2.0448 33 1 7.1533 -0.8029 2.0409 34 1 8.1130 0.6521 1.6802 35 1 8.2879 1.6225 4.7180 36 1 9.8772 0.8405 4.8934 37 1 9.4682 1.6975 3.3879 38 1 7.3195 -1.8848 4.2864 39 1 8.3982 -1.2012 5.5260 40 1 6.9130 -0.3356 5.0630 41 1 12.4013 -2.3449 4.1378 42 1 5.7218 3.4750 1.3184 43 1 6.1819 2.3287 0.0225 44 1 4.7956 2.8019 -1.8895 45 1 3.1702 3.5000 -1.6923 46 1 4.5997 4.4022 -1.1351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592058484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:04 Heat of formation + Delta-G solvation = -138.077271 kcal Electronic energy + Delta-G solvation = -28412.953819 eV Core-core repulsion = 24430.975283 eV Total energy + Delta-G solvation = -3981.978535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02951 -38.70993 -36.78983 -36.75359 -36.67897 -35.52713 -32.76248 -31.96653 -30.82619 -27.85129 -27.48949 -26.41046 -26.27433 -25.04382 -23.78951 -21.70477 -20.31992 -19.75684 -18.70648 -18.01681 -17.56888 -17.15988 -16.60568 -16.19002 -15.96740 -15.67050 -15.26568 -14.92058 -14.37340 -13.96581 -13.86845 -13.64076 -13.42555 -13.25437 -13.08329 -12.93487 -12.81862 -12.63567 -12.48732 -12.30854 -12.20677 -11.76086 -11.66952 -11.60304 -11.39690 -11.21603 -11.13292 -11.08320 -11.01152 -10.99504 -10.79831 -10.72757 -10.19447 -10.08007 -10.03281 -9.21271 -8.94422 -8.74642 -8.48733 -6.21471 -4.19012 0.56190 1.85593 2.33826 2.89182 3.24011 3.33263 3.37600 3.84565 4.11902 4.15213 4.32343 4.44043 4.52121 4.72943 4.79390 4.85831 4.87030 5.04514 5.07991 5.14267 5.20749 5.24157 5.37141 5.41658 5.46235 5.49283 5.55148 5.67578 5.83749 5.94117 5.96413 5.99835 6.06420 6.19210 6.26067 6.30484 6.41280 6.46535 6.68886 6.84767 7.10599 7.28776 7.40196 7.60068 8.36447 8.81141 9.42469 10.90994 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.003274 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.582658 B = 8548.957144 C = 8893.831216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.501 6.501 5 C -0.093 4.093 6 H 0.127 0.873 7 C 0.134 3.866 8 N -1.020 6.020 9 S 2.603 3.397 10 O -0.955 6.955 11 O -0.958 6.958 12 C -0.572 4.572 13 C 0.054 3.946 14 C -0.171 4.171 15 C -0.182 4.182 16 C -0.509 4.509 17 H 0.078 0.922 18 C 0.078 3.922 19 N -0.888 5.888 20 Si 0.873 3.127 21 H -0.280 1.280 22 H -0.300 1.300 23 H -0.246 1.246 24 C 0.117 3.883 25 C -0.084 4.084 26 H 0.098 0.902 27 C -0.143 4.143 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.266 0.734 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.532 6.410 -10.084 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.316 3.684 4 O -0.388 6.388 5 C -0.113 4.113 6 H 0.144 0.856 7 C 0.008 3.992 8 N -0.856 5.856 9 S 2.703 3.297 10 O -0.946 6.946 11 O -0.948 6.948 12 C -0.706 4.706 13 C 0.051 3.949 14 C -0.228 4.228 15 C -0.238 4.238 16 C -0.547 4.547 17 H 0.096 0.904 18 C -0.126 4.126 19 N -0.525 5.525 20 Si 0.705 3.295 21 H -0.208 1.208 22 H -0.229 1.229 23 H -0.172 1.172 24 C -0.008 4.008 25 C -0.104 4.104 26 H 0.116 0.884 27 C -0.201 4.201 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.749 6.958 -9.105 21.974 hybrid contribution 0.043 -0.535 0.417 0.680 sum -18.707 6.423 -8.688 21.602 Atomic orbital electron populations 1.23301 0.76108 1.03914 1.02580 1.86536 1.23608 1.33187 1.83858 1.23401 0.91443 0.81476 0.72105 1.90671 1.66886 1.36335 1.44868 1.22321 0.87507 0.99743 1.01759 0.85555 1.21472 0.89138 0.94200 0.94364 1.58901 1.45098 1.36144 1.45483 1.05483 0.75661 0.75884 0.72692 1.93554 1.81577 1.39162 1.80263 1.93543 1.65335 1.74326 1.61604 1.30413 1.15191 1.14150 1.10801 1.18245 0.93352 0.94551 0.88744 1.22684 1.01396 0.97388 1.01342 1.22824 0.99389 1.01867 0.99767 1.20640 1.05824 1.31165 0.97077 0.90356 1.24962 0.94239 0.94555 0.98805 1.69935 1.05699 1.41447 1.35387 0.87448 0.76063 0.79660 0.86343 1.20769 1.22880 1.17189 1.22173 0.96699 0.89899 0.92070 1.22399 0.96519 0.92766 0.98753 0.88355 1.21733 1.02476 1.01064 0.94785 0.87899 0.91762 0.91872 0.89868 0.90597 0.85603 0.85473 0.94474 0.91401 0.92291 0.91726 0.92972 0.93276 0.92385 0.89025 0.90757 0.92008 0.91852 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.39 10.55 -39.26 -0.41 -3.81 16 3 C 0.47 4.96 7.12 36.01 0.26 5.22 16 4 O -0.50 -6.30 15.52 -18.75 -0.29 -6.60 16 5 C -0.09 -0.85 2.94 -89.80 -0.26 -1.11 16 6 H 0.13 0.84 8.02 -51.93 -0.42 0.42 16 7 C 0.13 1.49 6.46 -3.07 -0.02 1.47 16 8 N -1.02 -13.32 3.62 -111.42 -0.40 -13.72 16 9 S 2.60 44.69 4.69 -107.50 -0.50 44.18 16 10 O -0.95 -18.39 15.13 -57.54 -0.87 -19.26 16 11 O -0.96 -18.53 15.22 -57.54 -0.88 -19.41 16 12 C -0.57 -10.24 5.10 37.16 0.19 -10.05 16 13 C 0.05 1.22 0.52 -155.66 -0.08 1.14 16 14 C -0.17 -3.80 6.95 37.16 0.26 -3.54 16 15 C -0.18 -4.04 7.22 37.16 0.27 -3.77 16 16 C -0.51 -13.50 8.62 -34.44 -0.30 -13.80 16 17 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.08 2.16 5.31 -17.82 -0.09 2.07 16 19 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 20 Si 0.87 21.37 22.79 -169.99 -3.87 17.50 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.25 -5.64 4.67 56.52 0.26 -5.38 16 24 C 0.12 1.24 6.54 -2.53 -0.02 1.22 16 25 C -0.08 -0.79 2.70 -88.33 -0.24 -1.03 16 26 H 0.10 1.06 7.49 -51.93 -0.39 0.67 16 27 C -0.14 -1.04 9.30 37.16 0.35 -0.69 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 33 H 0.13 2.02 8.14 -51.92 -0.42 1.59 16 34 H 0.13 2.06 8.14 -51.92 -0.42 1.63 16 35 H 0.04 0.78 6.21 -51.93 -0.32 0.45 16 36 H 0.07 1.56 4.32 -51.92 -0.22 1.34 16 37 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 40 H 0.05 1.03 5.46 -51.93 -0.28 0.74 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.09 1.01 7.67 -51.93 -0.40 0.61 16 43 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 44 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -34.21 362.77 -6.93 -41.15 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.31 Total: 1.52 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 1.37 Total: -21.58 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.37 Total: -39.16 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -2.45 Total: -49.08 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -3.87 Total: 17.50 kcal Atomic # 16 Polarization: 44.69 SS G_CDS: -0.50 Total: 44.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.21 -6.93 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592058484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.930 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds