Wall clock time and date at job start Tue Mar 31 2020 18:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99537 * 2 1 4 4 O 1.20826 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00129 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.78132 * 61.78636 * 5 3 2 7 7 C 1.54328 * 110.71873 * 298.54318 * 5 3 2 8 8 N 1.47014 * 107.40256 * 219.52096 * 7 5 3 9 9 S 1.65600 * 125.64966 * 178.90106 * 8 7 5 10 10 O 1.42097 * 104.28147 * 206.04646 * 9 8 7 11 11 O 1.42096 * 104.27721 * 333.90430 * 9 8 7 12 12 C 1.81402 * 104.44973 * 89.97506 * 9 8 7 13 13 C 1.52999 * 109.47363 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.46786 * 300.00295 * 13 12 9 15 15 C 1.53004 * 109.47222 * 59.99625 * 13 12 9 16 16 C 1.50691 * 109.47439 * 179.97438 * 13 12 9 17 17 H 1.08001 * 119.99794 * 0.83658 * 16 13 12 18 18 C 1.37878 * 120.00433 * 180.83700 * 16 13 12 19 19 N 1.31514 * 120.00232 * 194.58080 * 18 16 13 20 20 Si 1.86807 * 119.99655 * 14.57559 * 18 16 13 21 21 H 1.48500 * 109.47054 * 84.45824 * 20 18 16 22 22 H 1.48502 * 109.46844 * 204.45702 * 20 18 16 23 23 H 1.48499 * 109.46950 * 324.45679 * 20 18 16 24 24 C 1.47422 * 108.70532 * 358.86455 * 8 7 5 25 25 C 1.54914 * 104.83296 * 24.12892 * 24 8 7 26 26 H 1.08997 * 111.00056 * 81.06346 * 25 24 8 27 27 C 1.52999 * 111.00375 * 204.87909 * 25 24 8 28 28 H 1.09002 * 109.46586 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47279 * 299.99269 * 1 2 3 30 30 H 1.08997 * 109.47618 * 60.00645 * 1 2 3 31 31 H 1.08997 * 109.87726 * 100.02820 * 7 5 3 32 32 H 1.09003 * 109.88313 * 339.01864 * 7 5 3 33 33 H 1.09000 * 109.47030 * 300.00466 * 12 9 8 34 34 H 1.09000 * 109.46897 * 60.00030 * 12 9 8 35 35 H 1.08993 * 109.47636 * 70.23388 * 14 13 12 36 36 H 1.09010 * 109.46763 * 190.22862 * 14 13 12 37 37 H 1.08994 * 109.47103 * 310.22521 * 14 13 12 38 38 H 1.09000 * 109.46627 * 60.00107 * 15 13 12 39 39 H 1.08998 * 109.47085 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47127 * 300.00430 * 15 13 12 41 41 H 0.97006 * 119.99581 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36871 * 142.96448 * 24 8 7 43 43 H 1.09001 * 110.36956 * 265.29306 * 24 8 7 44 44 H 1.08996 * 109.47334 * 58.54901 * 27 25 24 45 45 H 1.09003 * 109.46851 * 178.54637 * 27 25 24 46 46 H 1.08997 * 109.46839 * 298.53764 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 -0.0006 6 1 3.9773 0.8144 -0.8988 7 6 4.1481 0.6147 1.2671 8 7 5.2740 1.4454 1.7183 9 16 6.2057 1.1630 3.0579 10 8 6.6906 2.4474 3.4247 11 8 5.3567 0.4251 3.9261 12 6 7.5613 0.1193 2.4547 13 6 8.5024 -0.2148 3.6137 14 6 9.0750 1.0795 4.1950 15 6 7.7276 -0.9628 4.7005 16 6 9.6281 -1.0823 3.1128 17 1 9.6757 -1.3558 2.0690 18 6 10.5973 -1.5270 3.9868 19 7 11.7193 -2.0324 3.5228 20 14 10.3168 -1.4114 5.8300 21 1 9.5458 -2.5949 6.2885 22 1 11.6267 -1.3730 6.5286 23 1 9.5549 -0.1746 6.1381 24 6 5.4368 2.5710 0.7803 25 6 4.0428 2.7486 0.1282 26 1 3.3773 3.3171 0.7778 27 6 4.1606 3.4108 -1.2460 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 4.4993 -0.3904 1.0335 32 1 3.3857 0.5694 2.0448 33 1 7.1533 -0.8029 2.0409 34 1 8.1130 0.6521 1.6802 35 1 8.2879 1.6225 4.7180 36 1 9.8772 0.8405 4.8934 37 1 9.4682 1.6975 3.3879 38 1 7.3195 -1.8848 4.2864 39 1 8.3982 -1.2012 5.5260 40 1 6.9130 -0.3356 5.0630 41 1 12.4013 -2.3449 4.1378 42 1 5.7218 3.4750 1.3184 43 1 6.1819 2.3287 0.0225 44 1 4.7956 2.8019 -1.8895 45 1 3.1702 3.5000 -1.6923 46 1 4.5997 4.4022 -1.1351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592058484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:03 Heat of formation + Delta-G solvation = -162.480435 kcal Electronic energy + Delta-G solvation = -28414.012019 eV Core-core repulsion = 24430.975283 eV Total energy + Delta-G solvation = -3983.036736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.80752 -39.52600 -38.49646 -38.20917 -37.49167 -36.97880 -34.04297 -33.59152 -31.58799 -29.03059 -28.44274 -28.15415 -27.13770 -26.97592 -24.66865 -22.46645 -21.53619 -21.04518 -19.93152 -19.02437 -18.61675 -18.14304 -17.97514 -17.50110 -17.20411 -17.01386 -16.88534 -15.96943 -15.25946 -15.15887 -14.98867 -14.78831 -14.72853 -14.57774 -14.35874 -14.24454 -14.16344 -13.73728 -13.70555 -13.32154 -13.20339 -13.12939 -12.90903 -12.83824 -12.72121 -12.68725 -12.57764 -12.12107 -12.00587 -11.96662 -11.85453 -11.80798 -11.79856 -11.68610 -11.53518 -10.97373 -10.68403 -10.51182 -9.97517 -8.34551 -6.33742 -0.78040 1.06346 1.30274 1.35856 1.43110 1.58180 1.78803 2.29807 2.80688 2.94345 3.00101 3.31514 3.39201 3.73992 3.75523 4.01497 4.07439 4.13793 4.24124 4.28350 4.31192 4.34597 4.43806 4.49441 4.53417 4.60259 4.67933 4.69027 4.72470 4.75630 4.79208 4.83441 4.93284 5.01076 5.06839 5.16076 5.25510 5.29389 5.32750 5.38231 5.45747 5.52728 5.63168 6.26845 6.64441 6.69497 7.30729 8.81138 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.003274 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.582658 B = 8548.957144 C = 8893.831216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.528 6.528 5 C -0.086 4.086 6 H 0.159 0.841 7 C 0.124 3.876 8 N -1.017 6.017 9 S 2.625 3.375 10 O -0.978 6.978 11 O -0.981 6.981 12 C -0.578 4.578 13 C 0.044 3.956 14 C -0.176 4.176 15 C -0.187 4.187 16 C -0.502 4.502 17 H 0.053 0.947 18 C 0.028 3.972 19 N -0.935 5.935 20 Si 0.914 3.086 21 H -0.276 1.276 22 H -0.306 1.306 23 H -0.223 1.223 24 C 0.108 3.892 25 C -0.081 4.081 26 H 0.078 0.922 27 C -0.138 4.138 28 H 0.130 0.870 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.266 0.734 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.040 6.757 -11.057 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.417 6.417 5 C -0.106 4.106 6 H 0.177 0.823 7 C -0.001 4.001 8 N -0.856 5.856 9 S 2.724 3.276 10 O -0.969 6.969 11 O -0.972 6.972 12 C -0.710 4.710 13 C 0.041 3.959 14 C -0.233 4.233 15 C -0.244 4.244 16 C -0.541 4.541 17 H 0.071 0.929 18 C -0.171 4.171 19 N -0.574 5.574 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.235 1.235 23 H -0.147 1.147 24 C -0.016 4.016 25 C -0.101 4.101 26 H 0.097 0.903 27 C -0.196 4.196 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.271 7.300 -10.069 23.782 hybrid contribution 0.405 -0.635 0.604 0.965 sum -19.867 6.665 -9.465 22.993 Atomic orbital electron populations 1.23562 0.74761 1.05742 1.02548 1.86527 1.25017 1.32649 1.83447 1.23648 0.91954 0.81339 0.71314 1.90663 1.67563 1.37208 1.46227 1.22389 0.86649 0.99527 1.02052 0.82323 1.21699 0.88307 0.95198 0.94903 1.58511 1.44722 1.37150 1.45200 1.04512 0.75219 0.74897 0.72956 1.93521 1.82162 1.39961 1.81215 1.93508 1.65674 1.74811 1.63186 1.30404 1.15226 1.15810 1.09561 1.18228 0.93186 0.93896 0.90553 1.22698 1.01444 0.97540 1.01611 1.22855 0.99578 1.02560 0.99410 1.20920 1.06670 1.30589 0.95903 0.92874 1.25640 0.94117 0.94754 1.02605 1.70048 1.06880 1.43741 1.36699 0.86755 0.75966 0.80829 0.82055 1.20252 1.23491 1.14727 1.22474 0.98205 0.88817 0.92120 1.22350 0.95280 0.92976 0.99510 0.90340 1.21715 1.02674 1.01605 0.93562 0.85204 0.92333 0.91431 0.87714 0.91904 0.83818 0.83883 0.93282 0.92544 0.91470 0.90927 0.93858 0.91975 0.92480 0.89774 0.87957 0.90069 0.92374 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.19 10.55 -51.43 -0.54 -6.73 16 3 C 0.47 9.13 7.12 71.24 0.51 9.63 16 4 O -0.53 -12.80 15.52 21.96 0.34 -12.46 16 5 C -0.09 -1.34 2.94 -10.26 -0.03 -1.37 16 6 H 0.16 1.45 8.02 -2.39 -0.02 1.43 16 7 C 0.12 2.46 6.46 86.73 0.56 3.02 16 8 N -1.02 -24.17 3.62 -506.43 -1.83 -26.00 16 9 S 2.62 84.79 4.69 -56.49 -0.26 84.53 16 10 O -0.98 -36.00 15.13 -127.65 -1.93 -37.93 16 11 O -0.98 -36.25 15.22 -127.65 -1.94 -38.19 16 12 C -0.58 -19.41 5.10 71.98 0.37 -19.04 16 13 C 0.04 1.91 0.52 -52.93 -0.03 1.89 16 14 C -0.18 -7.54 6.95 71.98 0.50 -7.04 16 15 C -0.19 -7.98 7.22 71.98 0.52 -7.46 16 16 C -0.50 -26.52 8.62 25.60 0.22 -26.30 16 17 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 18 C 0.03 1.55 5.31 84.65 0.45 2.00 16 19 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 20 Si 0.91 43.57 22.79 68.60 1.56 45.14 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 23 H -0.22 -9.72 4.67 99.48 0.46 -9.26 16 24 C 0.11 2.01 6.54 86.86 0.57 2.58 16 25 C -0.08 -1.34 2.70 -9.31 -0.03 -1.36 16 26 H 0.08 1.62 7.49 -2.39 -0.02 1.60 16 27 C -0.14 -1.62 9.30 71.98 0.67 -0.95 16 28 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.41 7.81 -2.39 -0.02 1.39 16 33 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 34 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 35 H 0.05 1.97 6.21 -2.39 -0.01 1.95 16 36 H 0.06 2.51 4.32 -2.38 -0.01 2.50 16 37 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 38 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.04 1.90 2.28 -2.39 -0.01 1.90 16 40 H 0.06 2.47 5.46 -2.39 -0.01 2.46 16 41 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 42 H 0.08 1.71 7.67 -2.39 -0.02 1.69 16 43 H 0.10 1.36 8.04 -2.39 -0.02 1.34 16 44 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.95 362.77 1.90 -72.05 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.73 Total: 18.34 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 5.48 Total: -42.89 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.53 Total: -81.85 kcal Atomic # 8 Polarization: -91.24 SS G_CDS: -4.08 Total: -95.31 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.56 Total: 45.14 kcal Atomic # 16 Polarization: 84.79 SS G_CDS: -0.26 Total: 84.53 kcal Total: -73.95 1.90 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592058484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.432 kcal (2) G-P(sol) polarization free energy of solvation -73.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds