Wall clock time and date at job start Tue Mar 31 2020 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.74167 * 2 1 4 4 O 1.43171 * 109.71760 * 239.39501 * 2 1 3 5 5 C 1.36102 * 116.69087 * 194.06041 * 4 2 1 6 6 C 1.38703 * 119.38847 * 197.19012 * 5 4 2 7 7 C 1.38195 * 120.07094 * 180.14130 * 6 5 4 8 8 C 1.38260 * 120.10592 * 0.02562 * 7 6 5 9 9 C 1.38191 * 120.11553 * 359.95053 * 8 7 6 10 10 C 1.38704 * 120.07124 * 359.96971 * 9 8 7 11 11 O 1.36107 * 119.39986 * 180.20154 * 10 9 8 12 12 C 1.43171 * 116.71531 * 197.05796 * 11 10 9 13 13 H 1.08999 * 109.70754 * 194.12944 * 12 11 10 14 14 C 1.50702 * 109.70790 * 73.55697 * 12 11 10 15 15 O 1.21285 * 119.99926 * 331.45765 * 14 12 11 16 16 N 1.34775 * 120.00364 * 151.45861 * 14 12 11 17 17 C 1.47026 * 125.64454 * 354.61776 * 16 14 12 18 18 C 1.54331 * 107.39998 * 178.90134 * 17 16 14 19 19 C 1.55400 * 102.82526 * 337.97598 * 18 17 16 20 20 O 1.42895 * 110.92691 * 277.25091 * 19 18 17 21 21 C 1.50705 * 111.03235 * 153.47488 * 19 18 17 22 22 H 1.08002 * 119.99808 * 247.67845 * 21 19 18 23 23 C 1.37875 * 120.00020 * 67.68199 * 21 19 18 24 24 N 1.31512 * 120.00128 * 0.02562 * 23 21 19 25 25 Si 1.86806 * 119.99953 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46939 * 59.99931 * 25 23 21 27 27 H 1.48500 * 109.47066 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46947 * 300.00225 * 25 23 21 29 29 C 1.47423 * 125.65099 * 174.66233 * 16 14 12 30 30 H 1.09000 * 109.47344 * 305.25994 * 1 2 3 31 31 H 1.08997 * 109.47109 * 65.25928 * 1 2 3 32 32 H 1.09002 * 109.46826 * 185.26031 * 1 2 3 33 33 H 1.08005 * 119.96750 * 0.15335 * 6 5 4 34 34 H 1.07993 * 119.94681 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.93742 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.96540 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.88265 * 298.39043 * 17 16 14 38 38 H 1.08996 * 109.88152 * 59.40606 * 17 16 14 39 39 H 1.08995 * 110.72018 * 96.25155 * 18 17 16 40 40 H 1.09002 * 110.71713 * 219.52079 * 18 17 16 41 41 H 0.96708 * 114.00259 * 292.25804 * 20 19 18 42 42 H 0.97004 * 119.99808 * 180.02562 * 24 23 21 43 43 H 1.08997 * 110.36785 * 322.92721 * 29 16 14 44 44 H 1.08996 * 110.36785 * 85.25773 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0131 -0.6862 -1.1600 5 6 3.3297 -1.0308 -1.1624 6 6 3.9443 -1.3624 -2.3608 7 6 5.2798 -1.7173 -2.3791 8 6 6.0067 -1.7434 -1.2033 9 6 5.4005 -1.4137 -0.0060 10 6 4.0609 -1.0550 0.0192 11 8 3.4788 -0.7288 1.2054 12 6 2.0476 -0.7358 1.2435 13 1 1.7013 -0.2271 2.1431 14 6 1.5460 -2.1569 1.2387 15 8 2.2006 -3.0292 0.7079 16 7 0.3701 -2.4586 1.8240 17 6 -0.4665 -1.5279 2.5958 18 6 -1.7227 -2.3024 3.0471 19 6 -1.7913 -3.4729 2.0272 20 8 -2.4213 -3.0565 0.8141 21 6 -2.4992 -4.6648 2.6186 22 1 -1.9503 -5.5723 2.8226 23 6 -3.8474 -4.5966 2.8990 24 7 -4.5158 -3.4918 2.6499 25 14 -4.7249 -6.0742 3.6313 26 1 -4.1045 -6.4224 4.9347 27 1 -6.1587 -5.7467 3.8366 28 1 -4.6091 -7.2283 2.7040 29 6 -0.2898 -3.7766 1.7974 30 1 -0.3634 0.5932 0.8391 31 1 -0.3633 0.4301 -0.9333 32 1 -0.3633 -1.0234 0.0942 33 1 3.3787 -1.3430 -3.2807 34 1 5.7564 -1.9747 -3.3134 35 1 7.0501 -2.0216 -1.2207 36 1 5.9708 -1.4345 0.9110 37 1 0.0825 -1.1717 3.4675 38 1 -0.7562 -0.6839 1.9699 39 1 -1.5982 -2.6819 4.0613 40 1 -2.6099 -1.6732 2.9759 41 1 -3.3625 -2.8552 0.9085 42 1 -5.4643 -3.4438 2.8476 43 1 -0.1435 -4.2546 0.8288 44 1 0.0956 -4.4101 2.5962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:19 Heat of formation + Delta-G solvation = -114.023475 kcal Electronic energy + Delta-G solvation = -30229.087598 eV Core-core repulsion = 26112.708162 eV Total energy + Delta-G solvation = -4116.379436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67037 -39.38274 -37.75782 -37.43125 -36.79834 -34.55833 -32.93513 -32.20849 -30.69028 -29.92675 -29.10431 -28.42788 -27.33045 -25.13665 -23.61900 -22.79261 -22.52757 -21.30561 -19.73602 -18.90853 -18.66322 -17.86201 -17.17848 -16.86468 -16.52089 -15.71636 -15.08241 -15.03606 -14.91763 -14.86930 -14.66479 -14.19526 -13.87809 -13.76496 -13.64624 -13.15024 -13.08489 -12.71572 -12.62120 -12.31425 -12.08276 -11.91529 -11.79206 -11.73319 -11.53851 -11.40568 -11.33936 -11.03878 -10.87897 -10.65769 -10.56096 -10.34260 -10.10790 -9.60600 -9.46402 -8.74915 -8.56316 -8.30512 -8.11305 -7.92024 -6.37021 -4.44612 1.35830 1.40370 2.64152 2.89399 3.17355 3.22511 3.24628 3.28927 3.40623 3.80915 4.12429 4.20803 4.52509 4.65796 4.67280 4.89624 4.96085 4.98764 5.01983 5.27601 5.35349 5.40081 5.43859 5.52934 5.61642 5.66711 5.78222 5.87818 5.93269 6.10241 6.16000 6.23241 6.28598 6.33274 6.49175 6.54617 6.66380 6.77202 6.83785 6.92374 7.19667 7.23423 7.45611 7.66394 7.89347 7.95044 8.41175 8.57459 9.24405 9.39548 10.70655 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024570 B = 0.003204 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.339441 B = 8737.306754 C = 8967.010591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.068 3.932 3 H 0.093 0.907 4 O -0.297 6.297 5 C 0.071 3.929 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.122 4.122 9 C -0.112 4.112 10 C 0.065 3.935 11 O -0.287 6.287 12 C 0.037 3.963 13 H 0.144 0.856 14 C 0.509 3.491 15 O -0.528 6.528 16 N -0.599 5.599 17 C 0.080 3.920 18 C -0.138 4.138 19 C 0.251 3.749 20 O -0.583 6.583 21 C -0.537 4.537 22 H 0.065 0.935 23 C 0.074 3.926 24 N -0.898 5.898 25 Si 0.904 3.096 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.121 3.879 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.386 0.614 42 H 0.270 0.730 43 H 0.071 0.929 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.272 10.120 -3.554 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.110 0.890 4 O -0.212 6.212 5 C 0.026 3.974 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.131 4.131 10 C 0.020 3.980 11 O -0.200 6.200 12 C -0.023 4.023 13 H 0.161 0.839 14 C 0.294 3.706 15 O -0.405 6.405 16 N -0.333 5.333 17 C -0.042 4.042 18 C -0.176 4.176 19 C 0.211 3.789 20 O -0.394 6.394 21 C -0.575 4.575 22 H 0.083 0.917 23 C -0.129 4.129 24 N -0.537 5.537 25 Si 0.732 3.268 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.200 1.200 29 C 0.000 4.000 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.238 0.762 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.058 9.683 -4.058 16.755 hybrid contribution -1.313 -0.617 0.974 1.747 sum 11.745 9.066 -3.084 15.154 Atomic orbital electron populations 1.22174 0.89977 1.05957 1.03760 1.23050 0.97651 0.94949 0.83237 0.88969 1.86344 1.21773 1.72984 1.40091 1.18861 0.83818 1.01252 0.93493 1.20393 0.94746 1.02898 0.95628 1.20833 0.93221 1.01143 0.98498 1.20819 1.00022 1.01516 0.91695 1.20360 0.92102 1.01402 0.99244 1.18811 0.93607 1.01741 0.83805 1.86360 1.18690 1.84173 1.30781 1.23277 0.80844 0.95910 1.02272 0.83864 1.20154 0.81026 0.90019 0.79355 1.90724 1.55700 1.48817 1.45221 1.48586 1.19516 1.13983 1.51186 1.22558 0.93503 0.93797 0.94339 1.23242 0.94396 0.99162 1.00836 1.19598 0.86691 0.90795 0.81850 1.86095 1.29200 1.89656 1.34437 1.21437 0.94402 0.99393 1.42289 0.91694 1.24974 0.97217 0.96367 0.94324 1.69538 1.09597 1.26275 1.48326 0.86446 0.78275 0.82466 0.79652 1.20025 1.21068 1.19954 1.22429 0.92887 0.83019 1.01706 0.89466 0.90366 0.88952 0.85070 0.85372 0.85382 0.85155 0.92729 0.91179 0.91275 0.89675 0.76166 0.91963 0.91059 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 7.94 37.16 0.30 -1.82 16 2 C 0.07 0.95 3.34 -26.48 -0.09 0.87 16 3 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 4 O -0.30 -5.02 9.70 -32.93 -0.32 -5.34 16 5 C 0.07 1.17 5.77 -39.14 -0.23 0.95 16 6 C -0.12 -1.67 9.96 -39.43 -0.39 -2.07 16 7 C -0.12 -1.41 10.04 -39.59 -0.40 -1.81 16 8 C -0.12 -1.45 10.04 -39.59 -0.40 -1.85 16 9 C -0.11 -1.57 9.96 -39.43 -0.39 -1.96 16 10 C 0.07 1.07 5.33 -39.14 -0.21 0.86 16 11 O -0.29 -4.69 10.09 -46.12 -0.47 -5.15 16 12 C 0.04 0.57 3.01 -27.63 -0.08 0.49 16 13 H 0.14 1.71 7.18 -51.93 -0.37 1.34 16 14 C 0.51 9.82 5.84 -10.99 -0.06 9.75 16 15 O -0.53 -12.13 15.30 -12.36 -0.19 -12.32 16 16 N -0.60 -11.42 2.57 -170.51 -0.44 -11.86 16 17 C 0.08 1.32 5.52 -3.06 -0.02 1.30 16 18 C -0.14 -2.74 5.66 -24.76 -0.14 -2.88 16 19 C 0.25 5.78 0.89 -89.49 -0.08 5.70 16 20 O -0.58 -14.16 13.18 -35.23 -0.46 -14.63 16 21 C -0.54 -13.53 8.25 -34.44 -0.28 -13.81 16 22 H 0.06 1.64 7.77 -52.49 -0.41 1.23 16 23 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 24 N -0.90 -22.19 10.79 55.43 0.60 -21.59 16 25 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 C 0.12 2.65 6.07 -2.53 -0.02 2.63 16 30 H 0.09 0.90 6.79 -51.93 -0.35 0.54 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.56 5.66 -51.93 -0.29 1.27 16 33 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.05 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.07 1.02 4.46 -51.93 -0.23 0.79 16 39 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 40 H 0.08 1.76 7.86 -51.93 -0.41 1.35 16 41 H 0.39 9.50 6.93 45.56 0.32 9.81 16 42 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 43 H 0.07 1.69 8.09 -51.93 -0.42 1.27 16 44 H 0.07 1.55 8.01 -51.93 -0.42 1.13 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -30.06 351.03 -8.69 -38.75 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.09 Total: 14.10 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.59 Total: -1.92 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.16 Total: -33.45 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.44 Total: -37.44 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.06 -8.69 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.271 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds