Wall clock time and date at job start Tue Mar 31 2020 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.74167 * 2 1 4 4 O 1.43171 * 109.71760 * 239.39501 * 2 1 3 5 5 C 1.36102 * 116.69087 * 194.06041 * 4 2 1 6 6 C 1.38703 * 119.38847 * 197.19012 * 5 4 2 7 7 C 1.38195 * 120.07094 * 180.14130 * 6 5 4 8 8 C 1.38260 * 120.10592 * 0.02562 * 7 6 5 9 9 C 1.38191 * 120.11553 * 359.95053 * 8 7 6 10 10 C 1.38704 * 120.07124 * 359.96971 * 9 8 7 11 11 O 1.36107 * 119.39986 * 180.20154 * 10 9 8 12 12 C 1.43171 * 116.71531 * 197.05796 * 11 10 9 13 13 H 1.08999 * 109.70754 * 194.12944 * 12 11 10 14 14 C 1.50702 * 109.70790 * 73.55697 * 12 11 10 15 15 O 1.21285 * 119.99926 * 331.45765 * 14 12 11 16 16 N 1.34775 * 120.00364 * 151.45861 * 14 12 11 17 17 C 1.47026 * 125.64454 * 354.61776 * 16 14 12 18 18 C 1.54331 * 107.39998 * 178.90134 * 17 16 14 19 19 C 1.55400 * 102.82526 * 337.97598 * 18 17 16 20 20 O 1.42895 * 110.92691 * 277.25091 * 19 18 17 21 21 C 1.50705 * 111.03235 * 153.47488 * 19 18 17 22 22 H 1.08002 * 119.99808 * 247.67845 * 21 19 18 23 23 C 1.37875 * 120.00020 * 67.68199 * 21 19 18 24 24 N 1.31512 * 120.00128 * 0.02562 * 23 21 19 25 25 Si 1.86806 * 119.99953 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46939 * 59.99931 * 25 23 21 27 27 H 1.48500 * 109.47066 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46947 * 300.00225 * 25 23 21 29 29 C 1.47423 * 125.65099 * 174.66233 * 16 14 12 30 30 H 1.09000 * 109.47344 * 305.25994 * 1 2 3 31 31 H 1.08997 * 109.47109 * 65.25928 * 1 2 3 32 32 H 1.09002 * 109.46826 * 185.26031 * 1 2 3 33 33 H 1.08005 * 119.96750 * 0.15335 * 6 5 4 34 34 H 1.07993 * 119.94681 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.93742 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.96540 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.88265 * 298.39043 * 17 16 14 38 38 H 1.08996 * 109.88152 * 59.40606 * 17 16 14 39 39 H 1.08995 * 110.72018 * 96.25155 * 18 17 16 40 40 H 1.09002 * 110.71713 * 219.52079 * 18 17 16 41 41 H 0.96708 * 114.00259 * 292.25804 * 20 19 18 42 42 H 0.97004 * 119.99808 * 180.02562 * 24 23 21 43 43 H 1.08997 * 110.36785 * 322.92721 * 29 16 14 44 44 H 1.08996 * 110.36785 * 85.25773 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 8 2.0131 -0.6862 -1.1600 5 6 3.3297 -1.0308 -1.1624 6 6 3.9443 -1.3624 -2.3608 7 6 5.2798 -1.7173 -2.3791 8 6 6.0067 -1.7434 -1.2033 9 6 5.4005 -1.4137 -0.0060 10 6 4.0609 -1.0550 0.0192 11 8 3.4788 -0.7288 1.2054 12 6 2.0476 -0.7358 1.2435 13 1 1.7013 -0.2271 2.1431 14 6 1.5460 -2.1569 1.2387 15 8 2.2006 -3.0292 0.7079 16 7 0.3701 -2.4586 1.8240 17 6 -0.4665 -1.5279 2.5958 18 6 -1.7227 -2.3024 3.0471 19 6 -1.7913 -3.4729 2.0272 20 8 -2.4213 -3.0565 0.8141 21 6 -2.4992 -4.6648 2.6186 22 1 -1.9503 -5.5723 2.8226 23 6 -3.8474 -4.5966 2.8990 24 7 -4.5158 -3.4918 2.6499 25 14 -4.7249 -6.0742 3.6313 26 1 -4.1045 -6.4224 4.9347 27 1 -6.1587 -5.7467 3.8366 28 1 -4.6091 -7.2283 2.7040 29 6 -0.2898 -3.7766 1.7974 30 1 -0.3634 0.5932 0.8391 31 1 -0.3633 0.4301 -0.9333 32 1 -0.3633 -1.0234 0.0942 33 1 3.3787 -1.3430 -3.2807 34 1 5.7564 -1.9747 -3.3134 35 1 7.0501 -2.0216 -1.2207 36 1 5.9708 -1.4345 0.9110 37 1 0.0825 -1.1717 3.4675 38 1 -0.7562 -0.6839 1.9699 39 1 -1.5982 -2.6819 4.0613 40 1 -2.6099 -1.6732 2.9759 41 1 -3.3625 -2.8552 0.9085 42 1 -5.4643 -3.4438 2.8476 43 1 -0.1435 -4.2546 0.8288 44 1 0.0956 -4.4101 2.5962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:19 Heat of formation + Delta-G solvation = -133.553568 kcal Electronic energy + Delta-G solvation = -30229.934486 eV Core-core repulsion = 26112.708162 eV Total energy + Delta-G solvation = -4117.226324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.84143 -40.83126 -39.11586 -38.60044 -38.15500 -36.25987 -34.14989 -34.09689 -31.81162 -31.45429 -30.26410 -29.92550 -28.62248 -26.87117 -24.69315 -24.23340 -23.63046 -22.60331 -21.46710 -20.11153 -19.87804 -19.34203 -18.85792 -18.02161 -17.81652 -17.05921 -16.92924 -16.35874 -16.26256 -16.16906 -15.78185 -15.70932 -15.22516 -14.94197 -14.82655 -14.72825 -14.41721 -14.11363 -13.82141 -13.79773 -13.50491 -13.46004 -13.20911 -13.01936 -12.91176 -12.77188 -12.65751 -12.50474 -12.44039 -12.28679 -12.06006 -11.79234 -11.43799 -11.33554 -11.00882 -10.64405 -10.15507 -9.66071 -9.61656 -9.02029 -8.26689 -6.40570 0.31221 0.36820 1.26055 1.42391 1.44919 1.51123 1.67223 2.05997 2.19980 2.38689 2.77197 2.97977 3.01169 3.23410 3.60287 3.62022 3.77465 3.92451 3.93934 4.00050 4.13727 4.27750 4.28234 4.31939 4.42821 4.48298 4.53523 4.60879 4.62455 4.73790 4.82340 4.90721 5.11633 5.16586 5.18907 5.19977 5.25008 5.43486 5.51083 5.52393 5.70453 5.76075 5.85129 6.03907 6.35085 6.45757 6.61677 6.92503 7.30679 7.46505 8.79267 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024570 B = 0.003204 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.339441 B = 8737.306754 C = 8967.010591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.066 3.934 3 H 0.125 0.875 4 O -0.323 6.323 5 C 0.043 3.957 6 C -0.137 4.137 7 C -0.112 4.112 8 C -0.117 4.117 9 C -0.125 4.125 10 C 0.034 3.966 11 O -0.294 6.294 12 C 0.042 3.958 13 H 0.182 0.818 14 C 0.502 3.498 15 O -0.575 6.575 16 N -0.597 5.597 17 C 0.084 3.916 18 C -0.128 4.128 19 C 0.240 3.760 20 O -0.592 6.592 21 C -0.566 4.566 22 H 0.052 0.948 23 C 0.040 3.960 24 N -0.905 5.905 25 Si 0.958 3.042 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.382 0.618 42 H 0.273 0.727 43 H 0.039 0.961 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.321 11.760 -3.082 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.010 3.990 3 H 0.142 0.858 4 O -0.238 6.238 5 C -0.002 4.002 6 C -0.155 4.155 7 C -0.130 4.130 8 C -0.135 4.135 9 C -0.144 4.144 10 C -0.010 4.010 11 O -0.207 6.207 12 C -0.018 4.018 13 H 0.199 0.801 14 C 0.291 3.709 15 O -0.455 6.455 16 N -0.330 5.330 17 C -0.037 4.037 18 C -0.166 4.166 19 C 0.200 3.800 20 O -0.402 6.402 21 C -0.604 4.604 22 H 0.071 0.929 23 C -0.161 4.161 24 N -0.545 5.545 25 Si 0.784 3.216 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.234 0.766 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.105 11.354 -3.572 18.456 hybrid contribution -1.599 -1.190 0.744 2.128 sum 12.506 10.164 -2.828 16.362 Atomic orbital electron populations 1.22181 0.89505 1.03995 1.05727 1.23344 0.97955 0.95936 0.81800 0.85764 1.86292 1.22371 1.73699 1.41467 1.19221 0.83869 1.02643 0.94486 1.20764 0.96059 1.03238 0.95457 1.21301 0.92305 0.99276 1.00150 1.21300 1.01659 0.99762 0.90773 1.20765 0.91596 1.01187 1.00837 1.19174 0.94640 1.03411 0.83786 1.86338 1.18995 1.84268 1.31139 1.23453 0.80674 0.93023 1.04627 0.80115 1.21007 0.80305 0.91596 0.78031 1.90686 1.57052 1.50715 1.47009 1.48598 1.19778 1.13155 1.51498 1.22692 0.91997 0.93178 0.95831 1.23017 0.96017 0.98064 0.99535 1.19721 0.86593 0.91630 0.82064 1.86091 1.28889 1.89745 1.35513 1.21670 0.95275 1.00000 1.43430 0.92946 1.25538 0.97543 0.98505 0.94536 1.69588 1.09778 1.27024 1.48083 0.85618 0.77584 0.79611 0.78832 1.19646 1.20247 1.20665 1.22152 0.93034 0.84702 0.99754 0.86075 0.89575 0.92941 0.84333 0.81885 0.81730 0.83834 0.88891 0.88706 0.91772 0.90295 0.76630 0.91695 0.94223 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 7.94 71.98 0.57 -3.27 16 2 C 0.07 1.74 3.34 30.76 0.10 1.84 16 3 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 4 O -0.32 -10.93 9.70 -82.41 -0.80 -11.73 16 5 C 0.04 1.41 5.77 22.56 0.13 1.54 16 6 C -0.14 -3.81 9.96 22.37 0.22 -3.59 16 7 C -0.11 -2.44 10.04 22.26 0.22 -2.22 16 8 C -0.12 -2.49 10.04 22.26 0.22 -2.27 16 9 C -0.13 -3.35 9.96 22.37 0.22 -3.13 16 10 C 0.03 1.11 5.33 22.56 0.12 1.23 16 11 O -0.29 -9.32 10.09 -69.87 -0.70 -10.02 16 12 C 0.04 1.22 3.01 30.01 0.09 1.31 16 13 H 0.18 3.66 7.18 -2.39 -0.02 3.65 16 14 C 0.50 19.42 5.84 87.66 0.51 19.93 16 15 O -0.57 -27.31 15.30 14.08 0.22 -27.10 16 16 N -0.60 -22.72 2.57 -811.78 -2.09 -24.80 16 17 C 0.08 2.59 5.52 86.73 0.48 3.06 16 18 C -0.13 -5.00 5.66 31.87 0.18 -4.82 16 19 C 0.24 11.29 0.89 -10.06 -0.01 11.28 16 20 O -0.59 -29.51 13.18 -148.98 -1.96 -31.48 16 21 C -0.57 -29.17 8.25 25.60 0.21 -28.96 16 22 H 0.05 2.75 7.77 -2.91 -0.02 2.73 16 23 C 0.04 2.00 5.30 84.65 0.45 2.45 16 24 N -0.91 -44.63 10.79 21.45 0.23 -44.40 16 25 Si 0.96 40.42 29.54 68.60 2.03 42.44 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 29 C 0.13 5.75 6.07 86.86 0.53 6.27 16 30 H 0.12 2.04 6.79 -2.39 -0.02 2.02 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.74 5.66 -2.39 -0.01 1.72 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 34 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.09 2.22 8.01 -2.38 -0.02 2.20 16 38 H 0.10 2.47 4.46 -2.39 -0.01 2.46 16 39 H 0.06 2.55 8.03 -2.39 -0.02 2.53 16 40 H 0.08 3.18 7.86 -2.39 -0.02 3.17 16 41 H 0.38 19.20 6.93 -74.05 -0.51 18.69 16 42 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 43 H 0.04 2.01 8.09 -2.39 -0.02 1.99 16 44 H 0.07 3.10 8.01 -2.39 -0.02 3.08 16 Total: -1.00 -68.74 351.03 1.71 -67.03 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.53 Total: 39.37 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 4.26 Total: 0.69 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.85 Total: -69.20 kcal Atomic # 8 Polarization: -77.07 SS G_CDS: -3.25 Total: -80.33 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -68.74 1.71 -67.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.519 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds