Wall clock time and date at job start Tue Mar 31 2020 17:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.70387 * 2 1 4 4 O 1.43170 * 109.74427 * 239.39715 * 2 1 3 5 5 C 1.36105 * 116.71994 * 194.11516 * 4 2 1 6 6 C 1.38699 * 119.40215 * 197.02849 * 5 4 2 7 7 C 1.38198 * 120.06637 * 180.35590 * 6 5 4 8 8 C 1.38254 * 120.11202 * 0.24040 * 7 6 5 9 9 C 1.38198 * 120.11444 * 359.43204 * 8 7 6 10 10 C 1.38703 * 120.06053 * 0.52241 * 9 8 7 11 11 O 1.36111 * 119.39103 * 179.90323 * 10 9 8 12 12 C 1.43174 * 116.69631 * 197.30429 * 11 10 9 13 13 H 1.09000 * 109.70542 * 73.41875 * 12 11 10 14 14 C 1.50694 * 109.71248 * 194.04434 * 12 11 10 15 15 O 1.21291 * 119.99758 * 28.71981 * 14 12 11 16 16 N 1.34773 * 120.00307 * 208.71797 * 14 12 11 17 17 C 1.47424 * 125.64662 * 5.59573 * 16 14 12 18 18 C 1.54912 * 104.82941 * 204.08877 * 17 16 14 19 19 C 1.55154 * 101.58555 * 322.98689 * 18 17 16 20 20 O 1.42894 * 110.72242 * 277.13870 * 19 18 17 21 21 C 1.50699 * 110.71962 * 153.86117 * 19 18 17 22 22 H 1.07993 * 120.00318 * 241.45365 * 21 19 18 23 23 C 1.37878 * 119.99584 * 61.46122 * 21 19 18 24 24 N 1.31519 * 120.00296 * 359.97438 * 23 21 19 25 25 Si 1.86799 * 119.99874 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46992 * 59.99727 * 25 23 21 27 27 H 1.48507 * 109.47170 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47029 * 299.99876 * 25 23 21 29 29 C 1.47026 * 125.65205 * 185.28219 * 16 14 12 30 30 H 1.08997 * 109.46621 * 293.42291 * 1 2 3 31 31 H 1.08994 * 109.46920 * 53.42675 * 1 2 3 32 32 H 1.09000 * 109.46856 * 173.42868 * 1 2 3 33 33 H 1.08000 * 119.96823 * 0.34283 * 6 5 4 34 34 H 1.08003 * 119.94315 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.94206 * 179.66718 * 8 7 6 36 36 H 1.07997 * 119.96564 * 180.26575 * 9 8 7 37 37 H 1.09000 * 110.36621 * 322.92443 * 17 16 14 38 38 H 1.09000 * 110.37119 * 85.14017 * 17 16 14 39 39 H 1.09002 * 111.00294 * 81.07031 * 18 17 16 40 40 H 1.09000 * 111.00278 * 204.87314 * 18 17 16 41 41 H 0.96696 * 114.00471 * 298.55117 * 20 19 18 42 42 H 0.96999 * 119.99628 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.87984 * 298.39716 * 29 16 14 44 44 H 1.09004 * 109.87789 * 59.55888 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 8 2.0137 -0.6860 -1.1598 5 6 3.3301 -1.0317 -1.1619 6 6 3.9444 -1.3664 -2.3595 7 6 5.2785 -1.7266 -2.3764 8 6 6.0031 -1.7591 -1.1994 9 6 5.3990 -1.4202 -0.0036 10 6 4.0606 -1.0568 0.0202 11 8 3.4788 -0.7275 1.2058 12 6 2.0476 -0.7350 1.2439 13 1 1.6852 -1.7630 1.2409 14 6 1.5685 -0.0302 2.4868 15 8 2.2400 0.8505 2.9814 16 7 0.3940 -0.3783 3.0486 17 6 -0.4621 -1.5010 2.6244 18 6 -1.8838 -1.1201 3.1074 19 6 -1.5779 -0.4297 4.4627 20 8 -1.4189 -1.3998 5.4998 21 6 -2.6612 0.5569 4.8150 22 1 -2.4227 1.6045 4.9248 23 6 -3.9569 0.1221 4.9973 24 7 -4.2474 -1.1536 4.8633 25 14 -5.2996 1.3449 5.4346 26 1 -5.4108 2.3634 4.3597 27 1 -6.5937 0.6300 5.5744 28 1 -4.9618 2.0134 6.7169 29 6 -0.2427 0.2948 4.1903 30 1 -0.3632 0.4085 0.9430 31 1 -0.3633 0.6123 -0.8253 32 1 -0.3633 -1.0209 -0.1176 33 1 3.3795 -1.3458 -3.2798 34 1 5.7547 -1.9874 -3.3100 35 1 7.0442 -2.0462 -1.2151 36 1 5.9684 -1.4422 0.9138 37 1 -0.4445 -1.6024 1.5392 38 1 -0.1347 -2.4273 3.0966 39 1 -2.3592 -0.4264 2.4139 40 1 -2.4988 -2.0086 3.2508 41 1 -2.2062 -1.9381 5.6590 42 1 -5.1589 -1.4595 4.9919 43 1 0.4026 0.2289 5.0663 44 1 -0.4332 1.3397 3.9453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:29 Heat of formation + Delta-G solvation = -116.154274 kcal Electronic energy + Delta-G solvation = -29596.486280 eV Core-core repulsion = 25480.014446 eV Total energy + Delta-G solvation = -4116.471834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66080 -39.70101 -37.93900 -37.62919 -36.99417 -34.61490 -33.05058 -32.30645 -30.90778 -29.93247 -29.30172 -28.50568 -27.41438 -25.15451 -23.80656 -22.95704 -22.53506 -21.22802 -19.81892 -19.19042 -18.87635 -17.99648 -17.27329 -17.02554 -16.29535 -15.90011 -15.52918 -15.07779 -14.98299 -14.86293 -14.74056 -14.50710 -14.24590 -14.00764 -13.68893 -13.38216 -13.16814 -12.69946 -12.56966 -12.38057 -12.16895 -12.05654 -12.00260 -11.71065 -11.53892 -11.48618 -11.43334 -11.07226 -10.93580 -10.74060 -10.57842 -10.48739 -10.21894 -9.63923 -9.45095 -8.83202 -8.75370 -8.34136 -8.23812 -8.22233 -6.36999 -4.45084 1.10886 1.12869 2.34120 2.71520 2.91793 3.16797 3.22122 3.25595 3.50385 3.62378 4.01424 4.20052 4.42287 4.46101 4.55825 4.75227 4.80954 4.90803 5.05896 5.07387 5.17319 5.22290 5.31877 5.48507 5.56962 5.57764 5.71134 5.75882 5.86868 5.91402 5.97649 6.01432 6.09807 6.26546 6.32442 6.43648 6.50658 6.71287 6.76161 6.83205 7.16426 7.23334 7.24960 7.64474 7.79785 7.91244 8.29828 8.57407 9.21017 9.30274 10.70454 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.002867 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.988889 B = 9762.747809 C =10098.628765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.067 3.933 3 H 0.092 0.908 4 O -0.300 6.300 5 C 0.049 3.951 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.055 3.945 11 O -0.282 6.282 12 C 0.043 3.957 13 H 0.103 0.897 14 C 0.536 3.464 15 O -0.525 6.525 16 N -0.599 5.599 17 C 0.077 3.923 18 C -0.133 4.133 19 C 0.249 3.751 20 O -0.585 6.585 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.074 3.926 24 N -0.895 5.895 25 Si 0.903 3.097 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.123 3.877 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.383 0.617 42 H 0.269 0.731 43 H 0.065 0.935 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.449 -3.570 -13.905 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.010 3.990 3 H 0.110 0.890 4 O -0.214 6.214 5 C 0.004 3.996 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.009 3.991 11 O -0.196 6.196 12 C -0.017 4.017 13 H 0.121 0.879 14 C 0.321 3.679 15 O -0.401 6.401 16 N -0.333 5.333 17 C -0.045 4.045 18 C -0.171 4.171 19 C 0.208 3.792 20 O -0.394 6.394 21 C -0.575 4.575 22 H 0.083 0.917 23 C -0.129 4.129 24 N -0.534 5.534 25 Si 0.731 3.269 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.200 1.200 29 C 0.002 3.998 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.261 -2.918 -13.581 18.529 hybrid contribution -1.454 0.257 0.256 1.499 sum 10.807 -2.661 -13.325 17.362 Atomic orbital electron populations 1.22128 0.89877 1.04373 1.04954 1.23010 0.97477 0.95729 0.82777 0.88975 1.86334 1.21402 1.73123 1.40588 1.18992 0.84513 1.02531 0.93524 1.20438 0.94750 1.02557 0.95518 1.20904 0.93191 1.01097 0.98594 1.20908 1.00179 1.00887 0.91545 1.20474 0.91887 1.01114 0.99640 1.19064 0.94024 1.01985 0.83996 1.86375 1.18988 1.84677 1.29538 1.23031 0.80981 1.01759 0.95961 0.87892 1.19039 0.80823 0.83876 0.84155 1.90722 1.54438 1.31862 1.63117 1.48556 1.19603 1.31986 1.33191 1.22902 0.93190 0.89224 0.99163 1.23313 0.91779 1.02342 0.99705 1.19455 0.88947 0.86457 0.84302 1.86147 1.42753 1.52812 1.57656 1.21437 0.92397 0.94445 1.49200 0.91739 1.24978 0.98654 0.95618 0.93661 1.69682 1.20883 1.13831 1.48999 0.86465 0.80275 0.80908 0.79292 1.20041 1.21090 1.19966 1.22178 0.94528 0.96361 0.86693 0.88613 0.90264 0.90306 0.84797 0.85123 0.85065 0.84668 0.91305 0.91519 0.91154 0.89082 0.76692 0.92074 0.91641 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.06 37.16 0.30 -1.61 16 2 C 0.07 0.93 3.16 -26.48 -0.08 0.85 16 3 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 4 O -0.30 -4.13 10.07 -32.86 -0.33 -4.46 16 5 C 0.05 0.67 6.49 -39.14 -0.25 0.41 16 6 C -0.11 -1.23 9.96 -39.43 -0.39 -1.62 16 7 C -0.12 -1.07 10.04 -39.59 -0.40 -1.47 16 8 C -0.12 -1.09 10.04 -39.59 -0.40 -1.48 16 9 C -0.11 -1.33 9.96 -39.42 -0.39 -1.73 16 10 C 0.05 0.79 6.49 -39.14 -0.25 0.53 16 11 O -0.28 -4.74 9.77 -46.12 -0.45 -5.19 16 12 C 0.04 0.68 2.56 -27.64 -0.07 0.61 16 13 H 0.10 1.47 7.02 -51.93 -0.36 1.11 16 14 C 0.54 10.00 6.27 -10.99 -0.07 9.93 16 15 O -0.53 -11.62 17.07 -12.27 -0.21 -11.82 16 16 N -0.60 -11.10 2.58 -170.51 -0.44 -11.54 16 17 C 0.08 1.28 5.55 -2.53 -0.01 1.27 16 18 C -0.13 -2.61 5.47 -24.58 -0.13 -2.74 16 19 C 0.25 5.62 0.84 -89.93 -0.08 5.54 16 20 O -0.58 -13.97 13.06 -35.23 -0.46 -14.43 16 21 C -0.54 -13.28 8.22 -34.44 -0.28 -13.57 16 22 H 0.06 1.60 7.57 -52.49 -0.40 1.21 16 23 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 24 N -0.90 -21.86 10.69 55.43 0.59 -21.27 16 25 Si 0.90 19.50 29.54 -169.99 -5.02 14.47 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 C 0.12 2.62 6.23 -3.06 -0.02 2.60 16 30 H 0.10 1.33 5.75 -51.93 -0.30 1.03 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.88 6.71 -51.93 -0.35 0.53 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.07 0.94 4.21 -51.93 -0.22 0.72 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 40 H 0.09 1.88 7.54 -51.93 -0.39 1.49 16 41 H 0.38 9.12 7.49 45.56 0.34 9.46 16 42 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 43 H 0.07 1.47 8.07 -51.93 -0.42 1.05 16 44 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -28.48 353.76 -8.63 -37.11 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.01 Total: 12.56 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.63 Total: -0.76 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.15 Total: -32.80 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.45 Total: -35.91 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.48 -8.63 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.045 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds