Wall clock time and date at job start Tue Mar 31 2020 17:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.70387 * 2 1 4 4 O 1.43170 * 109.74427 * 239.39715 * 2 1 3 5 5 C 1.36105 * 116.71994 * 194.11516 * 4 2 1 6 6 C 1.38699 * 119.40215 * 197.02849 * 5 4 2 7 7 C 1.38198 * 120.06637 * 180.35590 * 6 5 4 8 8 C 1.38254 * 120.11202 * 0.24040 * 7 6 5 9 9 C 1.38198 * 120.11444 * 359.43204 * 8 7 6 10 10 C 1.38703 * 120.06053 * 0.52241 * 9 8 7 11 11 O 1.36111 * 119.39103 * 179.90323 * 10 9 8 12 12 C 1.43174 * 116.69631 * 197.30429 * 11 10 9 13 13 H 1.09000 * 109.70542 * 73.41875 * 12 11 10 14 14 C 1.50694 * 109.71248 * 194.04434 * 12 11 10 15 15 O 1.21291 * 119.99758 * 28.71981 * 14 12 11 16 16 N 1.34773 * 120.00307 * 208.71797 * 14 12 11 17 17 C 1.47424 * 125.64662 * 5.59573 * 16 14 12 18 18 C 1.54912 * 104.82941 * 204.08877 * 17 16 14 19 19 C 1.55154 * 101.58555 * 322.98689 * 18 17 16 20 20 O 1.42894 * 110.72242 * 277.13870 * 19 18 17 21 21 C 1.50699 * 110.71962 * 153.86117 * 19 18 17 22 22 H 1.07993 * 120.00318 * 241.45365 * 21 19 18 23 23 C 1.37878 * 119.99584 * 61.46122 * 21 19 18 24 24 N 1.31519 * 120.00296 * 359.97438 * 23 21 19 25 25 Si 1.86799 * 119.99874 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46992 * 59.99727 * 25 23 21 27 27 H 1.48507 * 109.47170 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47029 * 299.99876 * 25 23 21 29 29 C 1.47026 * 125.65205 * 185.28219 * 16 14 12 30 30 H 1.08997 * 109.46621 * 293.42291 * 1 2 3 31 31 H 1.08994 * 109.46920 * 53.42675 * 1 2 3 32 32 H 1.09000 * 109.46856 * 173.42868 * 1 2 3 33 33 H 1.08000 * 119.96823 * 0.34283 * 6 5 4 34 34 H 1.08003 * 119.94315 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.94206 * 179.66718 * 8 7 6 36 36 H 1.07997 * 119.96564 * 180.26575 * 9 8 7 37 37 H 1.09000 * 110.36621 * 322.92443 * 17 16 14 38 38 H 1.09000 * 110.37119 * 85.14017 * 17 16 14 39 39 H 1.09002 * 111.00294 * 81.07031 * 18 17 16 40 40 H 1.09000 * 111.00278 * 204.87314 * 18 17 16 41 41 H 0.96696 * 114.00471 * 298.55117 * 20 19 18 42 42 H 0.96999 * 119.99628 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.87984 * 298.39716 * 29 16 14 44 44 H 1.09004 * 109.87789 * 59.55888 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 8 2.0137 -0.6860 -1.1598 5 6 3.3301 -1.0317 -1.1619 6 6 3.9444 -1.3664 -2.3595 7 6 5.2785 -1.7266 -2.3764 8 6 6.0031 -1.7591 -1.1994 9 6 5.3990 -1.4202 -0.0036 10 6 4.0606 -1.0568 0.0202 11 8 3.4788 -0.7275 1.2058 12 6 2.0476 -0.7350 1.2439 13 1 1.6852 -1.7630 1.2409 14 6 1.5685 -0.0302 2.4868 15 8 2.2400 0.8505 2.9814 16 7 0.3940 -0.3783 3.0486 17 6 -0.4621 -1.5010 2.6244 18 6 -1.8838 -1.1201 3.1074 19 6 -1.5779 -0.4297 4.4627 20 8 -1.4189 -1.3998 5.4998 21 6 -2.6612 0.5569 4.8150 22 1 -2.4227 1.6045 4.9248 23 6 -3.9569 0.1221 4.9973 24 7 -4.2474 -1.1536 4.8633 25 14 -5.2996 1.3449 5.4346 26 1 -5.4108 2.3634 4.3597 27 1 -6.5937 0.6300 5.5744 28 1 -4.9618 2.0134 6.7169 29 6 -0.2427 0.2948 4.1903 30 1 -0.3632 0.4085 0.9430 31 1 -0.3633 0.6123 -0.8253 32 1 -0.3633 -1.0209 -0.1176 33 1 3.3795 -1.3458 -3.2798 34 1 5.7547 -1.9874 -3.3100 35 1 7.0442 -2.0462 -1.2151 36 1 5.9684 -1.4422 0.9138 37 1 -0.4445 -1.6024 1.5392 38 1 -0.1347 -2.4273 3.0966 39 1 -2.3592 -0.4264 2.4139 40 1 -2.4988 -2.0086 3.2508 41 1 -2.2062 -1.9381 5.6590 42 1 -5.1589 -1.4595 4.9919 43 1 0.4026 0.2289 5.0663 44 1 -0.4332 1.3397 3.9453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:28 Heat of formation + Delta-G solvation = -133.761086 kcal Electronic energy + Delta-G solvation = -29597.249769 eV Core-core repulsion = 25480.014446 eV Total energy + Delta-G solvation = -4117.235323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.75459 -41.12909 -39.25844 -38.71579 -38.27727 -36.30867 -34.22238 -34.16719 -31.86852 -31.45475 -30.31765 -29.98858 -28.69212 -26.86850 -24.82796 -24.21583 -23.66199 -22.40833 -21.44215 -20.50131 -20.01372 -19.31945 -18.98358 -18.13682 -17.51410 -17.16157 -16.90204 -16.83780 -16.27312 -16.10974 -15.92856 -15.62494 -15.59375 -15.18708 -14.90746 -14.81635 -14.41220 -14.05320 -13.91770 -13.66086 -13.54872 -13.40926 -13.21802 -13.15241 -12.89878 -12.83505 -12.68286 -12.47762 -12.38498 -12.29093 -12.06029 -11.95606 -11.58408 -11.30305 -11.06356 -10.62853 -10.16099 -9.81847 -9.68509 -9.16701 -8.24184 -6.38183 0.25930 0.27461 0.99578 1.35228 1.44065 1.46928 1.53144 1.86963 2.31670 2.41054 2.70963 2.89609 3.01148 3.12206 3.41012 3.48809 3.72802 3.79561 3.88875 3.98674 4.10747 4.17939 4.25178 4.28943 4.39588 4.44968 4.49315 4.55244 4.60590 4.65415 4.83218 4.86128 5.03137 5.09499 5.12918 5.16064 5.20508 5.43828 5.49110 5.53822 5.67842 5.76409 5.77276 6.06577 6.26495 6.30291 6.64429 6.78459 7.31380 7.40376 8.81489 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.002867 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.988889 B = 9762.747809 C =10098.628765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.074 3.926 3 H 0.079 0.921 4 O -0.300 6.300 5 C 0.024 3.976 6 C -0.116 4.116 7 C -0.107 4.107 8 C -0.107 4.107 9 C -0.126 4.126 10 C 0.019 3.981 11 O -0.311 6.311 12 C 0.050 3.950 13 H 0.119 0.881 14 C 0.537 3.463 15 O -0.567 6.567 16 N -0.596 5.596 17 C 0.086 3.914 18 C -0.120 4.120 19 C 0.237 3.763 20 O -0.594 6.594 21 C -0.561 4.561 22 H 0.053 0.947 23 C 0.041 3.959 24 N -0.903 5.903 25 Si 0.956 3.044 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.281 1.281 29 C 0.129 3.871 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.153 0.847 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.381 0.619 42 H 0.272 0.728 43 H 0.045 0.955 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.113 -4.719 -16.713 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.097 0.903 4 O -0.215 6.215 5 C -0.020 4.020 6 C -0.134 4.134 7 C -0.125 4.125 8 C -0.125 4.125 9 C -0.144 4.144 10 C -0.025 4.025 11 O -0.226 6.226 12 C -0.010 4.010 13 H 0.136 0.864 14 C 0.324 3.676 15 O -0.446 6.446 16 N -0.329 5.329 17 C -0.035 4.035 18 C -0.159 4.159 19 C 0.197 3.803 20 O -0.403 6.403 21 C -0.600 4.600 22 H 0.071 0.929 23 C -0.161 4.161 24 N -0.541 5.541 25 Si 0.782 3.218 26 H -0.197 1.197 27 H -0.204 1.204 28 H -0.206 1.206 29 C 0.007 3.993 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.171 0.829 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.155 0.845 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.231 0.769 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.926 -4.093 -16.414 21.290 hybrid contribution -1.524 0.594 1.091 1.966 sum 11.402 -3.499 -15.323 19.418 Atomic orbital electron populations 1.22104 0.88522 1.05553 1.04739 1.22911 0.98360 0.94848 0.82262 0.90328 1.86317 1.21967 1.73255 1.39943 1.19343 0.84444 1.03951 0.94279 1.20826 0.95731 1.01719 0.95166 1.21408 0.92334 0.98738 0.99997 1.21353 1.01683 0.98961 0.90529 1.20769 0.91165 1.01398 1.01111 1.19450 0.95155 1.04347 0.83538 1.86307 1.19203 1.85621 1.31421 1.22937 0.81287 1.02114 0.94679 0.86387 1.19592 0.80100 0.83259 0.84639 1.90690 1.55618 1.33796 1.64541 1.48509 1.19851 1.32160 1.32359 1.22942 0.90763 0.88422 1.01380 1.23080 0.93417 1.01490 0.97923 1.19596 0.89000 0.86376 0.85351 1.86135 1.42653 1.53001 1.58517 1.21640 0.93570 0.94439 1.50307 0.92900 1.25524 1.00007 0.97045 0.93523 1.69736 1.21251 1.14466 1.48690 0.85649 0.78309 0.79244 0.78616 1.19724 1.20425 1.20627 1.21926 0.93937 0.96322 0.87110 0.90358 0.88454 0.88803 0.82884 0.81252 0.81663 0.84481 0.87670 0.90909 0.91322 0.89867 0.76949 0.91868 0.93666 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.06 71.98 0.58 -2.92 16 2 C 0.07 2.02 3.16 30.75 0.10 2.11 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 O -0.30 -7.89 10.07 -82.51 -0.83 -8.72 16 5 C 0.02 0.63 6.49 22.56 0.15 0.77 16 6 C -0.12 -2.16 9.96 22.37 0.22 -1.93 16 7 C -0.11 -1.47 10.04 22.26 0.22 -1.25 16 8 C -0.11 -1.63 10.04 22.26 0.22 -1.41 16 9 C -0.13 -2.83 9.96 22.37 0.22 -2.61 16 10 C 0.02 0.55 6.49 22.56 0.15 0.70 16 11 O -0.31 -10.68 9.77 -69.93 -0.68 -11.36 16 12 C 0.05 1.57 2.56 30.00 0.08 1.65 16 13 H 0.12 3.26 7.02 -2.39 -0.02 3.24 16 14 C 0.54 20.52 6.27 87.66 0.55 21.07 16 15 O -0.57 -26.22 17.07 13.97 0.24 -25.98 16 16 N -0.60 -22.37 2.58 -811.76 -2.10 -24.47 16 17 C 0.09 2.77 5.55 86.86 0.48 3.25 16 18 C -0.12 -4.70 5.47 31.99 0.17 -4.53 16 19 C 0.24 10.91 0.84 -10.35 -0.01 10.90 16 20 O -0.59 -28.97 13.06 -148.98 -1.95 -30.92 16 21 C -0.56 -28.32 8.22 25.60 0.21 -28.11 16 22 H 0.05 2.71 7.57 -2.91 -0.02 2.69 16 23 C 0.04 2.01 5.28 84.65 0.45 2.46 16 24 N -0.90 -43.89 10.69 21.45 0.23 -43.66 16 25 Si 0.96 39.90 29.54 68.60 2.03 41.93 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 29 C 0.13 5.69 6.23 86.73 0.54 6.23 16 30 H 0.08 2.11 5.75 -2.39 -0.01 2.09 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.85 6.71 -2.39 -0.02 1.83 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 35 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.11 2.64 4.21 -2.39 -0.01 2.63 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.69 8.04 -2.39 -0.02 2.67 16 40 H 0.08 3.39 7.54 -2.39 -0.02 3.38 16 41 H 0.38 18.47 7.49 -74.06 -0.55 17.91 16 42 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 43 H 0.04 2.14 8.07 -2.39 -0.02 2.12 16 44 H 0.07 3.10 7.66 -2.39 -0.02 3.08 16 Total: -1.00 -63.44 353.76 1.76 -61.68 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.49 Total: 35.12 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 4.34 Total: 6.38 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -1.87 Total: -68.13 kcal Atomic # 8 Polarization: -73.76 SS G_CDS: -3.22 Total: -76.98 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -63.44 1.76 -61.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.080 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds