Wall clock time and date at job start Tue Mar 31 2020 18:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53001 * 109.46588 * 240.00387 * 2 1 3 5 5 C 1.53002 * 109.47288 * 65.62237 * 4 2 1 6 6 H 1.09007 * 109.52178 * 305.70770 * 5 4 2 7 7 C 1.53036 * 109.49908 * 185.63517 * 5 4 2 8 8 C 1.53043 * 109.53879 * 178.68121 * 7 5 4 9 9 C 1.53188 * 109.31141 * 61.36069 * 8 7 5 10 10 N 1.46958 * 108.88877 * 305.44382 * 9 8 7 11 11 S 1.65611 * 120.65139 * 233.53581 * 10 9 8 12 12 O 1.42092 * 104.27925 * 25.89148 * 11 10 9 13 13 O 1.42098 * 104.27582 * 153.74929 * 11 10 9 14 14 C 1.81402 * 104.44772 * 269.81905 * 11 10 9 15 15 C 1.53000 * 109.47022 * 180.02562 * 14 11 10 16 16 C 1.50695 * 109.46884 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00400 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99759 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00134 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99773 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47096 * 60.00427 * 20 18 16 22 22 H 1.48504 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47348 * 300.00006 * 20 18 16 24 24 C 1.46926 * 118.71847 * 53.35795 * 10 9 8 25 25 C 1.50698 * 109.47091 * 120.00893 * 2 1 3 26 26 O 1.20820 * 120.00199 * 120.00260 * 25 2 1 27 27 O 1.34230 * 119.99852 * 299.99244 * 25 2 1 28 28 H 1.09002 * 109.46941 * 294.37433 * 1 2 3 29 29 H 1.08996 * 109.47026 * 54.37507 * 1 2 3 30 30 H 1.09003 * 109.47130 * 174.38054 * 1 2 3 31 31 H 1.08993 * 109.47693 * 305.61467 * 4 2 1 32 32 H 1.09005 * 109.47160 * 185.61412 * 4 2 1 33 33 H 1.09008 * 109.45790 * 298.69499 * 7 5 4 34 34 H 1.08996 * 109.46498 * 58.66912 * 7 5 4 35 35 H 1.09005 * 109.49836 * 181.31298 * 8 7 5 36 36 H 1.09004 * 109.49236 * 301.40609 * 8 7 5 37 37 H 1.08997 * 109.58927 * 65.15559 * 9 8 7 38 38 H 1.09008 * 109.58361 * 185.43525 * 9 8 7 39 39 H 1.08999 * 109.47148 * 300.00318 * 14 11 10 40 40 H 1.09004 * 109.47081 * 60.00194 * 14 11 10 41 41 H 1.08996 * 109.46920 * 300.00399 * 15 14 11 42 42 H 1.09004 * 109.47124 * 60.00110 * 15 14 11 43 43 H 0.96995 * 120.00648 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.58718 * 186.78374 * 24 10 9 45 45 H 1.08996 * 109.58299 * 66.50119 * 24 10 9 46 46 H 0.96701 * 117.00111 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6485 0.0771 -2.4945 6 1 0.5727 0.2528 -2.4913 7 6 2.0335 -0.7111 -3.7485 8 6 1.6127 0.0718 -4.9944 9 6 2.3497 1.4144 -5.0220 10 7 2.1040 2.1180 -3.7554 11 16 1.5166 3.6665 -3.7499 12 8 0.8105 3.7778 -4.9779 13 8 0.8425 3.7811 -2.5043 14 6 2.9984 4.7127 -3.7704 15 6 2.5831 6.1853 -3.7664 16 6 3.8140 7.0544 -3.7841 17 1 4.7945 6.6018 -3.7965 18 6 3.6885 8.4275 -3.7834 19 7 2.4946 8.9786 -3.7668 20 14 5.2144 9.5048 -3.8046 21 1 6.0061 9.2176 -5.0277 22 1 4.8113 10.9341 -3.8009 23 1 6.0387 9.2193 -2.6029 24 6 2.3858 1.4199 -2.4937 25 6 2.0324 -0.7106 1.2303 26 8 2.7270 -1.6929 1.1194 27 8 1.7082 -0.2521 2.4495 28 1 -0.3633 0.4241 0.9361 29 1 -0.3633 0.5986 -0.8353 30 1 -0.3633 -1.0228 -0.1006 31 1 1.5968 -1.7156 -1.3011 32 1 3.1253 -0.8091 -1.2006 33 1 3.1125 -0.8650 -3.7637 34 1 1.5290 -1.6772 -3.7394 35 1 1.8662 -0.5008 -5.8867 36 1 0.5372 0.2474 -4.9676 37 1 3.4194 1.2418 -5.1400 38 1 1.9826 2.0157 -5.8538 39 1 3.6030 4.5037 -2.8879 40 1 3.5800 4.5013 -4.6678 41 1 1.9782 6.3945 -4.6487 42 1 2.0016 6.3963 -2.8689 43 1 2.4062 9.9446 -3.7667 44 1 2.0408 2.0257 -1.6558 45 1 3.4583 1.2478 -2.4031 46 1 2.0542 -0.7409 3.2087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594573271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:21 Heat of formation + Delta-G solvation = -193.984191 kcal Electronic energy + Delta-G solvation = -27705.120965 eV Core-core repulsion = 23720.718124 eV Total energy + Delta-G solvation = -3984.402841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71338 -38.99903 -36.70759 -36.47016 -35.50965 -35.35618 -33.89750 -32.47888 -31.16533 -31.10706 -26.81176 -25.63092 -25.07149 -24.60397 -22.52007 -21.55896 -20.58184 -19.88450 -18.52486 -18.24889 -17.63764 -16.87391 -16.51212 -16.19274 -15.88600 -15.45679 -15.09397 -14.67093 -14.55399 -14.33702 -14.13538 -13.94353 -13.48326 -13.41640 -13.36267 -12.95348 -12.51430 -12.49401 -12.29637 -11.83564 -11.77113 -11.73148 -11.68114 -11.60042 -11.47511 -11.34098 -11.16289 -11.07576 -10.97990 -10.85333 -10.67613 -10.53307 -10.46061 -10.38781 -10.37306 -9.76746 -9.34221 -8.76012 -8.51192 -6.13393 -4.19161 0.73483 1.95211 2.76569 3.00390 3.26449 3.31342 3.33112 4.26311 4.27970 4.37085 4.46880 4.50125 4.60570 4.74143 4.81075 4.87324 4.98726 5.02578 5.21616 5.22183 5.25980 5.33479 5.40031 5.52059 5.53527 5.59633 5.62830 5.65857 5.70109 5.74414 5.80090 5.82105 5.90300 5.98747 6.05422 6.20724 6.23296 6.27537 6.47796 6.67516 7.28381 7.34541 7.63319 7.79344 8.16499 8.84028 9.45619 10.97596 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.003106 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.825622 B = 9013.175873 C =10179.251920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.116 0.884 4 C -0.098 4.098 5 C -0.102 4.102 6 H 0.083 0.917 7 C -0.110 4.110 8 C -0.131 4.131 9 C 0.117 3.883 10 N -1.006 6.006 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.964 6.964 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.118 3.882 25 C 0.484 3.516 26 O -0.519 6.519 27 O -0.514 6.514 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 -22.021 5.015 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.134 0.866 4 C -0.136 4.136 5 C -0.122 4.122 6 H 0.102 0.898 7 C -0.148 4.148 8 C -0.170 4.170 9 C -0.009 4.009 10 N -0.842 5.842 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.954 6.954 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.007 4.007 25 C 0.327 3.673 26 O -0.407 6.407 27 O -0.326 6.326 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.261 -21.687 4.648 22.295 hybrid contribution 1.804 0.370 0.554 1.923 sum -0.457 -21.317 5.202 21.947 Atomic orbital electron populations 1.21850 0.91657 1.02856 1.04160 1.21185 0.98808 1.01550 0.89366 0.86588 1.21542 1.02201 0.98813 0.91020 1.21559 1.01543 0.94856 0.94200 0.89843 1.21503 1.01473 0.98094 0.93682 1.21853 1.01152 0.95930 0.98054 1.21416 0.99935 0.93998 0.85539 1.57940 1.83736 1.31372 1.11139 1.05718 0.77880 0.73465 0.74118 1.93526 1.70592 1.85270 1.46047 1.93519 1.71948 1.85280 1.44667 1.30501 1.18271 1.13513 1.10001 1.18957 0.98678 0.84613 0.98819 1.20968 0.92037 0.90790 1.52295 0.92109 1.25066 0.96323 0.98174 0.94874 1.69936 1.22103 1.11360 1.49451 0.86531 0.82735 0.79294 0.78718 1.20073 1.21050 1.20067 1.21530 0.99746 0.93593 0.85880 1.23631 0.76548 0.82278 0.84871 1.90709 1.36186 1.26430 1.87379 1.84569 1.72155 1.58974 1.16894 0.91096 0.90149 0.92155 0.90615 0.90497 0.91630 0.91747 0.90848 0.91344 0.91632 0.88741 0.86325 0.86295 0.94906 0.94874 0.92450 0.88808 0.91424 0.73338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.80 37.16 0.33 -0.88 16 2 C -0.09 -0.79 2.71 -91.77 -0.25 -1.03 16 3 H 0.12 1.00 6.48 -51.93 -0.34 0.67 16 4 C -0.10 -0.82 3.50 -26.73 -0.09 -0.91 16 5 C -0.10 -0.92 2.22 -90.50 -0.20 -1.13 16 6 H 0.08 0.81 6.47 -51.93 -0.34 0.47 16 7 C -0.11 -0.90 5.17 -26.69 -0.14 -1.03 16 8 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 9 C 0.12 1.27 6.42 -3.70 -0.02 1.25 16 10 N -1.01 -13.01 3.23 -113.50 -0.37 -13.38 16 11 S 2.59 45.42 5.45 -107.50 -0.59 44.83 16 12 O -0.96 -19.51 16.59 -57.54 -0.95 -20.46 16 13 O -0.96 -18.98 16.59 -57.54 -0.95 -19.93 16 14 C -0.59 -11.16 6.12 37.16 0.23 -10.93 16 15 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.12 1.28 5.34 -3.71 -0.02 1.26 16 25 C 0.48 4.66 7.63 36.00 0.27 4.93 16 26 O -0.52 -6.33 16.66 -18.75 -0.31 -6.64 16 27 O -0.51 -3.98 13.22 -39.26 -0.52 -4.50 16 28 H 0.07 0.57 7.98 -51.93 -0.41 0.16 16 29 H 0.08 0.69 6.74 -51.93 -0.35 0.34 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.67 7.93 -51.93 -0.41 0.25 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.12 6.87 -51.92 -0.36 0.77 16 39 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 40 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.09 1.07 5.48 -51.93 -0.28 0.79 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.41 1.46 9.10 45.56 0.41 1.87 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -36.02 380.21 -9.54 -45.57 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.69 Total: 0.73 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -0.61 Total: -22.38 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.37 Total: -39.02 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.74 Total: -51.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -0.59 Total: 44.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.02 -9.54 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594573271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.415 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds