Wall clock time and date at job start Tue Mar 31 2020 18:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53001 * 109.46588 * 240.00387 * 2 1 3 5 5 C 1.53002 * 109.47288 * 65.62237 * 4 2 1 6 6 H 1.09007 * 109.52178 * 305.70770 * 5 4 2 7 7 C 1.53036 * 109.49908 * 185.63517 * 5 4 2 8 8 C 1.53043 * 109.53879 * 178.68121 * 7 5 4 9 9 C 1.53188 * 109.31141 * 61.36069 * 8 7 5 10 10 N 1.46958 * 108.88877 * 305.44382 * 9 8 7 11 11 S 1.65611 * 120.65139 * 233.53581 * 10 9 8 12 12 O 1.42092 * 104.27925 * 25.89148 * 11 10 9 13 13 O 1.42098 * 104.27582 * 153.74929 * 11 10 9 14 14 C 1.81402 * 104.44772 * 269.81905 * 11 10 9 15 15 C 1.53000 * 109.47022 * 180.02562 * 14 11 10 16 16 C 1.50695 * 109.46884 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00400 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99759 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00134 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99773 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47096 * 60.00427 * 20 18 16 22 22 H 1.48504 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47348 * 300.00006 * 20 18 16 24 24 C 1.46926 * 118.71847 * 53.35795 * 10 9 8 25 25 C 1.50698 * 109.47091 * 120.00893 * 2 1 3 26 26 O 1.20820 * 120.00199 * 120.00260 * 25 2 1 27 27 O 1.34230 * 119.99852 * 299.99244 * 25 2 1 28 28 H 1.09002 * 109.46941 * 294.37433 * 1 2 3 29 29 H 1.08996 * 109.47026 * 54.37507 * 1 2 3 30 30 H 1.09003 * 109.47130 * 174.38054 * 1 2 3 31 31 H 1.08993 * 109.47693 * 305.61467 * 4 2 1 32 32 H 1.09005 * 109.47160 * 185.61412 * 4 2 1 33 33 H 1.09008 * 109.45790 * 298.69499 * 7 5 4 34 34 H 1.08996 * 109.46498 * 58.66912 * 7 5 4 35 35 H 1.09005 * 109.49836 * 181.31298 * 8 7 5 36 36 H 1.09004 * 109.49236 * 301.40609 * 8 7 5 37 37 H 1.08997 * 109.58927 * 65.15559 * 9 8 7 38 38 H 1.09008 * 109.58361 * 185.43525 * 9 8 7 39 39 H 1.08999 * 109.47148 * 300.00318 * 14 11 10 40 40 H 1.09004 * 109.47081 * 60.00194 * 14 11 10 41 41 H 1.08996 * 109.46920 * 300.00399 * 15 14 11 42 42 H 1.09004 * 109.47124 * 60.00110 * 15 14 11 43 43 H 0.96995 * 120.00648 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.58718 * 186.78374 * 24 10 9 45 45 H 1.08996 * 109.58299 * 66.50119 * 24 10 9 46 46 H 0.96701 * 117.00111 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6485 0.0771 -2.4945 6 1 0.5727 0.2528 -2.4913 7 6 2.0335 -0.7111 -3.7485 8 6 1.6127 0.0718 -4.9944 9 6 2.3497 1.4144 -5.0220 10 7 2.1040 2.1180 -3.7554 11 16 1.5166 3.6665 -3.7499 12 8 0.8105 3.7778 -4.9779 13 8 0.8425 3.7811 -2.5043 14 6 2.9984 4.7127 -3.7704 15 6 2.5831 6.1853 -3.7664 16 6 3.8140 7.0544 -3.7841 17 1 4.7945 6.6018 -3.7965 18 6 3.6885 8.4275 -3.7834 19 7 2.4946 8.9786 -3.7668 20 14 5.2144 9.5048 -3.8046 21 1 6.0061 9.2176 -5.0277 22 1 4.8113 10.9341 -3.8009 23 1 6.0387 9.2193 -2.6029 24 6 2.3858 1.4199 -2.4937 25 6 2.0324 -0.7106 1.2303 26 8 2.7270 -1.6929 1.1194 27 8 1.7082 -0.2521 2.4495 28 1 -0.3633 0.4241 0.9361 29 1 -0.3633 0.5986 -0.8353 30 1 -0.3633 -1.0228 -0.1006 31 1 1.5968 -1.7156 -1.3011 32 1 3.1253 -0.8091 -1.2006 33 1 3.1125 -0.8650 -3.7637 34 1 1.5290 -1.6772 -3.7394 35 1 1.8662 -0.5008 -5.8867 36 1 0.5372 0.2474 -4.9676 37 1 3.4194 1.2418 -5.1400 38 1 1.9826 2.0157 -5.8538 39 1 3.6030 4.5037 -2.8879 40 1 3.5800 4.5013 -4.6678 41 1 1.9782 6.3945 -4.6487 42 1 2.0016 6.3963 -2.8689 43 1 2.4062 9.9446 -3.7667 44 1 2.0408 2.0257 -1.6558 45 1 3.4583 1.2478 -2.4031 46 1 2.0542 -0.7409 3.2087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594573271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:19 Heat of formation + Delta-G solvation = -219.667380 kcal Electronic energy + Delta-G solvation = -27706.234671 eV Core-core repulsion = 23720.718124 eV Total energy + Delta-G solvation = -3985.516548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.44429 -39.79966 -38.21377 -37.18832 -36.98255 -36.20088 -35.89007 -33.32568 -33.11300 -31.87427 -27.60835 -27.50001 -25.80483 -25.51586 -23.54310 -23.19000 -21.37278 -20.62275 -19.73158 -19.15015 -18.92998 -18.37091 -17.56758 -17.26661 -17.01470 -16.76577 -16.54072 -16.07345 -15.56999 -15.18068 -15.00988 -14.95221 -14.79126 -14.45317 -14.24271 -14.12215 -13.76586 -13.72429 -13.24732 -13.20601 -13.15032 -12.93551 -12.90791 -12.79878 -12.77787 -12.50871 -12.24625 -12.22264 -12.15732 -12.12264 -11.88137 -11.75674 -11.56956 -11.48326 -11.27814 -11.21116 -11.06398 -10.64347 -9.83744 -8.26186 -6.40601 -0.69420 1.21612 1.40651 1.44086 1.52302 1.76880 2.15580 2.37966 2.87002 3.06898 3.19194 3.55669 3.72732 3.82452 3.99292 4.04297 4.06799 4.11914 4.18802 4.24830 4.31125 4.49578 4.56424 4.63627 4.65295 4.75675 4.84032 4.87256 4.90008 4.95347 4.97312 5.07129 5.16203 5.23322 5.26574 5.27102 5.31561 5.34441 5.40104 5.58001 5.63678 5.67764 5.74005 6.06077 6.72820 7.01903 7.29646 8.85834 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.003106 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.825622 B = 9013.175873 C =10179.251920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.115 0.885 4 C -0.088 4.088 5 C -0.097 4.097 6 H 0.075 0.925 7 C -0.107 4.107 8 C -0.129 4.129 9 C 0.105 3.895 10 N -0.994 5.994 11 S 2.611 3.389 12 O -0.995 6.995 13 O -0.989 6.989 14 C -0.590 4.590 15 C 0.021 3.979 16 C -0.541 4.541 17 H 0.075 0.925 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.107 3.893 25 C 0.490 3.510 26 O -0.547 6.547 27 O -0.515 6.515 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.004 0.996 42 H 0.006 0.994 43 H 0.268 0.732 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -23.880 5.117 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.133 0.867 4 C -0.126 4.126 5 C -0.117 4.117 6 H 0.093 0.907 7 C -0.144 4.144 8 C -0.168 4.168 9 C -0.019 4.019 10 N -0.833 5.833 11 S 2.710 3.290 12 O -0.985 6.985 13 O -0.979 6.979 14 C -0.722 4.722 15 C -0.018 4.018 16 C -0.580 4.580 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.573 5.573 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.209 1.209 23 H -0.187 1.187 24 C -0.018 4.018 25 C 0.334 3.666 26 O -0.438 6.438 27 O -0.328 6.328 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.268 -23.539 4.769 24.018 hybrid contribution 1.141 0.868 0.568 1.542 sum 0.873 -22.671 5.337 23.307 Atomic orbital electron populations 1.21827 0.91364 1.03320 1.03787 1.21247 0.99078 1.01509 0.89487 0.86672 1.21454 1.02224 0.98721 0.90244 1.21524 1.00830 0.94069 0.95325 0.90697 1.21511 1.02427 0.98221 0.92257 1.21872 1.00042 0.95174 0.99741 1.21737 1.01934 0.94387 0.83842 1.57558 1.83505 1.29239 1.13024 1.04726 0.77160 0.74319 0.72824 1.93481 1.71400 1.86283 1.47327 1.93479 1.72579 1.86213 1.45670 1.30423 1.20013 1.09714 1.12037 1.18807 0.97714 0.89024 0.96227 1.21494 0.93213 0.91605 1.51703 0.90688 1.26120 0.99732 0.99998 0.94323 1.70087 1.24743 1.11767 1.50750 0.85373 0.78524 0.76937 0.79478 1.18768 1.20916 1.18739 1.21851 1.01556 0.94039 0.84341 1.23702 0.75817 0.81668 0.85446 1.90698 1.37563 1.27672 1.87831 1.84535 1.71944 1.59143 1.17175 0.91217 0.90864 0.91192 0.90070 0.90357 0.90347 0.90331 0.88530 0.92785 0.88876 0.90088 0.84232 0.84314 0.97719 0.97554 0.92352 0.89728 0.88975 0.71259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.80 71.98 0.63 -1.60 16 2 C -0.09 -1.52 2.71 -11.54 -0.03 -1.55 16 3 H 0.12 1.88 6.48 -2.39 -0.02 1.87 16 4 C -0.09 -1.29 3.50 30.60 0.11 -1.18 16 5 C -0.10 -1.57 2.22 -10.72 -0.02 -1.59 16 6 H 0.07 1.36 6.47 -2.38 -0.02 1.34 16 7 C -0.11 -1.40 5.17 30.62 0.16 -1.24 16 8 C -0.13 -2.03 6.08 30.67 0.19 -1.85 16 9 C 0.11 2.08 6.42 86.35 0.55 2.64 16 10 N -0.99 -24.35 3.23 -513.01 -1.66 -26.00 16 11 S 2.61 92.46 5.45 -56.49 -0.31 92.15 16 12 O -0.99 -41.22 16.59 -127.65 -2.12 -43.34 16 13 O -0.99 -39.81 16.59 -127.65 -2.12 -41.92 16 14 C -0.59 -22.27 6.12 71.98 0.44 -21.83 16 15 C 0.02 1.11 4.98 29.85 0.15 1.26 16 16 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 17 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 19 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 20 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 24 C 0.11 2.11 5.34 86.36 0.46 2.58 16 25 C 0.49 8.74 7.63 71.24 0.54 9.29 16 26 O -0.55 -12.59 16.66 21.98 0.37 -12.22 16 27 O -0.51 -7.22 13.22 -51.42 -0.68 -7.90 16 28 H 0.07 1.07 7.98 -2.39 -0.02 1.05 16 29 H 0.07 1.24 6.74 -2.39 -0.02 1.22 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.15 7.93 -2.38 -0.02 1.14 16 33 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.84 6.87 -2.38 -0.02 1.83 16 39 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 40 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 41 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.08 1.85 5.48 -2.39 -0.01 1.84 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.43 2.37 9.10 -74.06 -0.67 1.69 16 Total: -1.00 -79.17 380.21 -0.02 -79.19 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.31 Total: 16.14 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 3.87 Total: -44.64 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.37 Total: -82.61 kcal Atomic # 8 Polarization: -100.84 SS G_CDS: -4.55 Total: -105.39 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 92.46 SS G_CDS: -0.31 Total: 92.15 kcal Total: -79.17 -0.02 -79.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594573271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.475 kcal (2) G-P(sol) polarization free energy of solvation -79.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds