Wall clock time and date at job start Tue Mar 31 2020 18:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47026 * 2 1 4 4 C 1.53002 * 109.47250 * 120.00041 * 2 1 3 5 5 C 1.52999 * 109.46822 * 294.20631 * 4 2 1 6 6 H 1.09004 * 109.49989 * 54.86462 * 5 4 2 7 7 C 1.53048 * 109.49419 * 174.92349 * 5 4 2 8 8 C 1.53039 * 109.53707 * 181.32087 * 7 5 4 9 9 C 1.53200 * 109.30903 * 298.63250 * 8 7 5 10 10 N 1.46921 * 108.77556 * 54.63990 * 9 8 7 11 11 S 1.65603 * 120.63233 * 126.36735 * 10 9 8 12 12 O 1.42100 * 104.27463 * 206.06977 * 11 10 9 13 13 O 1.42095 * 104.27577 * 333.92328 * 11 10 9 14 14 C 1.81393 * 104.44786 * 90.00097 * 11 10 9 15 15 C 1.53006 * 109.46995 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.46750 * 179.97438 * 15 14 11 17 17 H 1.07988 * 120.00348 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99494 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00270 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47372 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47328 * 119.99894 * 20 18 16 23 23 H 1.48504 * 109.46678 * 239.99787 * 20 18 16 24 24 C 1.46934 * 118.73879 * 306.39028 * 10 9 8 25 25 C 1.50700 * 109.46893 * 240.00248 * 2 1 3 26 26 O 1.20834 * 119.99512 * 240.00108 * 25 2 1 27 27 O 1.34224 * 120.00475 * 59.99591 * 25 2 1 28 28 H 1.09005 * 109.46637 * 305.86081 * 1 2 3 29 29 H 1.08997 * 109.47300 * 65.85808 * 1 2 3 30 30 H 1.08995 * 109.47271 * 185.86883 * 1 2 3 31 31 H 1.08999 * 109.46798 * 174.20992 * 4 2 1 32 32 H 1.08995 * 109.46856 * 54.20804 * 4 2 1 33 33 H 1.08993 * 109.46062 * 61.29686 * 7 5 4 34 34 H 1.09006 * 109.44487 * 301.33268 * 7 5 4 35 35 H 1.08999 * 109.49815 * 178.68835 * 8 7 5 36 36 H 1.09004 * 109.52540 * 58.60066 * 8 7 5 37 37 H 1.09002 * 109.57997 * 174.42012 * 9 8 7 38 38 H 1.08991 * 109.58506 * 294.84802 * 9 8 7 39 39 H 1.09008 * 109.47366 * 299.99708 * 14 11 10 40 40 H 1.08997 * 109.47759 * 59.99953 * 14 11 10 41 41 H 1.08994 * 109.46911 * 299.99422 * 15 14 11 42 42 H 1.09003 * 109.47108 * 60.00102 * 15 14 11 43 43 H 0.97002 * 120.00045 * 179.97438 * 19 18 16 44 44 H 1.09006 * 109.58178 * 293.82252 * 24 10 9 45 45 H 1.08993 * 109.70395 * 173.47064 * 24 10 9 46 46 H 0.96698 * 117.00550 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6524 0.0792 2.4942 6 1 0.5756 0.2484 2.4972 7 6 2.0500 -0.7027 3.7484 8 6 1.6330 0.0821 4.9943 9 6 2.3629 1.4290 5.0125 10 7 2.1019 2.1254 3.7454 11 16 1.5025 3.6691 3.7389 12 8 0.8213 3.7753 2.4964 13 8 0.8017 3.7780 4.9702 14 6 2.9761 4.7268 3.7493 15 6 2.5493 6.1961 3.7449 16 6 3.7737 7.0748 3.7542 17 1 4.7576 6.6299 3.7619 18 6 3.6374 8.4468 3.7527 19 7 2.4391 8.9887 3.7427 20 14 5.1549 9.5361 3.7634 21 1 6.3735 8.6873 3.7733 22 1 5.1578 10.3930 2.5506 23 1 5.1399 10.3938 4.9756 24 6 2.3823 1.4259 2.4840 25 6 2.0323 -0.7104 -1.2305 26 8 2.7269 -1.6928 -1.1196 27 8 1.7080 -0.2519 -2.4496 28 1 -0.3633 0.6021 0.8329 29 1 -0.3634 0.4203 -0.9377 30 1 -0.3633 -1.0222 0.1051 31 1 3.1251 -0.8119 1.1988 32 1 1.5945 -1.7146 1.3026 33 1 3.1298 -0.8507 3.7569 34 1 1.5507 -1.6716 3.7455 35 1 1.8956 -0.4859 5.8868 36 1 0.5565 0.2519 4.9746 37 1 1.9961 2.0320 5.8431 38 1 3.4342 1.2625 5.1241 39 1 3.5640 4.5223 4.6442 40 1 3.5780 4.5203 2.8643 41 1 1.9615 6.4010 2.8503 42 1 1.9478 6.4024 4.6302 43 1 2.3433 9.9540 3.7421 44 1 3.4554 1.2592 2.3895 45 1 2.0305 2.0260 1.6450 46 1 2.0534 -0.7410 -3.2089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594573272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:24 Heat of formation + Delta-G solvation = -193.978907 kcal Electronic energy + Delta-G solvation = -27710.134264 eV Core-core repulsion = 23725.731652 eV Total energy + Delta-G solvation = -3984.402612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71236 -39.00268 -36.70827 -36.46979 -35.50930 -35.35642 -33.89890 -32.47858 -31.16495 -31.10524 -26.81152 -25.63396 -25.07158 -24.60413 -22.51929 -21.56230 -20.58508 -19.88142 -18.52813 -18.24832 -17.63998 -16.87261 -16.51456 -16.19282 -15.88697 -15.45953 -15.09343 -14.67291 -14.54938 -14.33595 -14.13500 -13.94223 -13.48213 -13.41560 -13.36076 -12.95634 -12.52471 -12.49096 -12.29632 -11.83623 -11.76915 -11.73141 -11.68107 -11.60071 -11.47454 -11.34018 -11.16302 -11.10369 -10.97123 -10.85357 -10.67659 -10.53241 -10.43600 -10.40428 -10.36226 -9.77382 -9.32272 -8.75853 -8.52004 -6.13879 -4.19422 0.73484 1.95188 2.76579 3.00293 3.24310 3.31692 3.35098 4.26321 4.27871 4.36946 4.46973 4.50258 4.60571 4.74208 4.81011 4.87396 4.98775 5.02485 5.21369 5.22268 5.25985 5.33649 5.39987 5.52112 5.53641 5.59552 5.62855 5.65744 5.69996 5.74295 5.80172 5.82176 5.90403 5.98746 6.05507 6.20667 6.23329 6.27569 6.47705 6.67538 7.28453 7.34334 7.63359 7.79433 8.16223 8.84296 9.45515 10.97144 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.003109 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.188926 B = 9003.349092 C =10170.803370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.116 0.884 4 C -0.098 4.098 5 C -0.102 4.102 6 H 0.083 0.917 7 C -0.110 4.110 8 C -0.131 4.131 9 C 0.117 3.883 10 N -1.006 6.006 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.964 6.964 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.118 3.882 25 C 0.484 3.516 26 O -0.519 6.519 27 O -0.514 6.514 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -22.043 -4.963 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.134 0.866 4 C -0.136 4.136 5 C -0.122 4.122 6 H 0.102 0.898 7 C -0.147 4.147 8 C -0.170 4.170 9 C -0.009 4.009 10 N -0.842 5.842 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.954 6.954 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.008 4.008 25 C 0.327 3.673 26 O -0.407 6.407 27 O -0.326 6.326 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.080 -21.726 -4.591 22.303 hybrid contribution 1.780 0.398 -0.563 1.909 sum -0.300 -21.328 -5.155 21.944 Atomic orbital electron populations 1.21849 0.91651 1.02863 1.04164 1.21189 0.98813 1.01549 0.89363 0.86588 1.21543 1.02208 0.98801 0.91028 1.21561 1.01553 0.94841 0.94200 0.89849 1.21503 1.01445 0.98117 0.93681 1.21855 1.01196 0.95905 0.98040 1.21420 0.99885 0.94071 0.85511 1.57935 1.83373 1.31743 1.11128 1.05718 0.77838 0.73507 0.74120 1.93520 1.71642 1.85343 1.44907 1.93527 1.70804 1.85306 1.45795 1.30503 1.18202 1.13596 1.10004 1.18970 0.98639 0.84705 0.98831 1.21042 0.92106 0.90753 1.52018 0.92005 1.25074 0.96293 0.98238 0.94901 1.69966 1.21732 1.11476 1.49660 0.86418 0.82694 0.80418 0.77784 1.19646 1.20774 1.20785 1.21535 0.99797 0.93525 0.85900 1.23635 0.76545 0.82279 0.84873 1.90712 1.36194 1.26425 1.87385 1.84566 1.72178 1.58947 1.16892 0.90144 0.91095 0.92153 0.90497 0.90619 0.91632 0.91750 0.90865 0.91341 0.88744 0.91597 0.86296 0.86322 0.94866 0.94889 0.92575 0.91421 0.88784 0.73336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.80 37.16 0.33 -0.88 16 2 C -0.09 -0.79 2.70 -91.77 -0.25 -1.03 16 3 H 0.12 1.00 6.45 -51.93 -0.33 0.67 16 4 C -0.10 -0.82 3.51 -26.73 -0.09 -0.91 16 5 C -0.10 -0.92 2.21 -90.50 -0.20 -1.12 16 6 H 0.08 0.81 6.50 -51.93 -0.34 0.47 16 7 C -0.11 -0.90 5.17 -26.69 -0.14 -1.03 16 8 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 9 C 0.12 1.27 6.43 -3.71 -0.02 1.25 16 10 N -1.01 -13.00 3.22 -113.52 -0.37 -13.36 16 11 S 2.59 45.38 5.45 -107.50 -0.59 44.79 16 12 O -0.96 -18.96 16.59 -57.54 -0.95 -19.91 16 13 O -0.96 -19.50 16.59 -57.54 -0.95 -20.45 16 14 C -0.59 -11.15 6.12 37.16 0.23 -10.93 16 15 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 16 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.12 1.28 5.33 -3.71 -0.02 1.26 16 25 C 0.48 4.66 7.63 36.01 0.27 4.93 16 26 O -0.52 -6.33 16.66 -18.76 -0.31 -6.65 16 27 O -0.51 -3.98 13.22 -39.24 -0.52 -4.50 16 28 H 0.08 0.70 6.77 -51.93 -0.35 0.35 16 29 H 0.07 0.57 7.97 -51.93 -0.41 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.67 7.93 -51.93 -0.41 0.25 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.12 6.86 -51.93 -0.36 0.77 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 40 H 0.12 2.02 8.14 -51.93 -0.42 1.59 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.07 5.46 -51.93 -0.28 0.79 16 46 H 0.41 1.46 9.10 45.56 0.41 1.87 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -36.05 380.18 -9.54 -45.60 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.69 Total: 0.66 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -0.61 Total: -22.37 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.37 Total: -38.97 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -2.74 Total: -51.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 45.38 SS G_CDS: -0.59 Total: 44.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.05 -9.54 -45.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594573272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.383 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds