Wall clock time and date at job start Tue Mar 31 2020 18:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46971 * 2 1 4 4 C 1.52997 * 109.47352 * 240.00446 * 2 1 3 5 5 C 1.53001 * 109.47219 * 64.99201 * 4 2 1 6 6 C 1.53043 * 109.44748 * 64.97177 * 5 4 2 7 7 C 1.53191 * 109.31132 * 181.37889 * 6 5 4 8 8 N 1.46921 * 108.77411 * 305.35957 * 7 6 5 9 9 S 1.65596 * 120.63236 * 233.63250 * 8 7 6 10 10 O 1.42100 * 104.27862 * 26.04892 * 9 8 7 11 11 O 1.42106 * 104.27871 * 153.91077 * 9 8 7 12 12 C 1.81402 * 104.44990 * 269.97787 * 9 8 7 13 13 C 1.53000 * 109.47061 * 179.97438 * 12 9 8 14 14 C 1.50707 * 109.46984 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00049 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00106 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00093 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00270 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47160 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47494 * 119.99570 * 18 16 14 21 21 H 1.48493 * 109.47390 * 239.99703 * 18 16 14 22 22 C 1.46925 * 118.73795 * 53.61317 * 8 7 6 23 23 C 1.53046 * 109.46008 * 185.02822 * 5 4 2 24 24 C 1.50699 * 109.47591 * 119.99671 * 2 1 3 25 25 O 1.20818 * 119.99866 * 119.99808 * 24 2 1 26 26 O 1.34232 * 120.00200 * 300.00543 * 24 2 1 27 27 H 1.08998 * 109.47089 * 299.99702 * 1 2 3 28 28 H 1.08988 * 109.47643 * 59.99864 * 1 2 3 29 29 H 1.09006 * 109.46363 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46480 * 304.99743 * 4 2 1 31 31 H 1.08994 * 109.47164 * 184.99714 * 4 2 1 32 32 H 1.09002 * 109.46300 * 305.00346 * 5 4 2 33 33 H 1.09004 * 109.49679 * 301.32867 * 6 5 4 34 34 H 1.08994 * 109.49744 * 61.42383 * 6 5 4 35 35 H 1.09002 * 109.58035 * 185.57574 * 7 6 5 36 36 H 1.09001 * 109.70369 * 65.22144 * 7 6 5 37 37 H 1.08998 * 109.47778 * 299.99976 * 12 9 8 38 38 H 1.09007 * 109.46755 * 60.00240 * 12 9 8 39 39 H 1.08997 * 109.47295 * 299.99984 * 13 12 9 40 40 H 1.09004 * 109.47371 * 60.00676 * 13 12 9 41 41 H 0.96997 * 120.00484 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.59222 * 186.59958 * 22 8 7 43 43 H 1.09006 * 109.70276 * 66.24587 * 22 8 7 44 44 H 1.08996 * 109.49923 * 298.58843 * 23 5 4 45 45 H 1.09001 * 109.49381 * 58.67936 * 23 5 4 46 46 H 0.96696 * 116.99994 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6352 0.0690 -2.4953 6 6 2.3446 1.4251 -2.4915 7 6 1.9106 2.2273 -3.7224 8 7 2.1586 1.4199 -4.9245 9 16 3.0540 2.0267 -6.1784 10 8 3.9001 2.9926 -5.5697 11 8 3.5941 0.8755 -6.8127 12 6 1.8372 2.8343 -7.2544 13 6 2.5500 3.4422 -8.4641 14 6 1.5391 4.1136 -9.3577 15 1 0.4928 4.1070 -9.0898 16 6 1.9497 4.7354 -10.5177 17 7 3.2237 4.7431 -10.8442 18 14 0.6967 5.5670 -11.6257 19 1 -0.6593 5.4176 -11.0389 20 1 1.0263 7.0097 -11.7504 21 1 0.7266 4.9346 -12.9689 22 6 1.5975 0.0638 -4.9929 23 6 2.0350 -0.7142 -3.7479 24 6 2.0325 -0.7103 1.2305 25 8 2.7271 -1.6926 1.1196 26 8 1.7082 -0.2518 2.4496 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3632 -1.0278 0.0005 30 1 1.6054 -1.7197 -1.2951 31 1 3.1263 -0.7993 -1.2056 32 1 0.5562 0.2236 -2.4926 33 1 2.0777 1.9728 -1.5877 34 1 3.4233 1.2715 -2.5192 35 1 2.4860 3.1514 -3.7776 36 1 0.8484 2.4618 -3.6524 37 1 1.1076 2.0990 -7.5939 38 1 1.3278 3.6222 -6.6995 39 1 3.2792 4.1776 -8.1244 40 1 3.0596 2.6546 -9.0192 41 1 3.5127 5.1809 -11.6601 42 1 1.9662 -0.4397 -5.8866 43 1 0.5093 0.1176 -5.0266 44 1 3.1166 -0.8477 -3.7637 45 1 1.5477 -1.6892 -3.7382 46 1 2.0537 -0.7409 3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594574133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:33 Heat of formation + Delta-G solvation = -220.323448 kcal Electronic energy + Delta-G solvation = -27175.124424 eV Core-core repulsion = 23189.579427 eV Total energy + Delta-G solvation = -3985.544997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44167 -39.78011 -38.20531 -37.20155 -36.98363 -36.31497 -35.88568 -33.11960 -32.88427 -31.91780 -28.10531 -27.54204 -26.00911 -24.33704 -23.84878 -23.33865 -21.53700 -20.54374 -19.70043 -19.10196 -18.94869 -18.34830 -17.62339 -17.16654 -17.04644 -16.75751 -16.53004 -15.76773 -15.66589 -15.26594 -15.07642 -14.97451 -14.73397 -14.45236 -14.33942 -14.05686 -13.73098 -13.68820 -13.25434 -13.17136 -13.05122 -12.94895 -12.85830 -12.79337 -12.75628 -12.52741 -12.25562 -12.21016 -12.11578 -12.06691 -12.03464 -11.74674 -11.64286 -11.31353 -11.22560 -11.12845 -11.04160 -10.66009 -9.82996 -8.26163 -6.40468 -0.67847 1.23218 1.41146 1.41910 1.55291 1.80123 2.16934 2.38127 2.89560 3.07078 3.21088 3.64113 3.69235 3.82899 3.96101 4.06181 4.09415 4.16069 4.27503 4.30751 4.34557 4.53238 4.56069 4.63846 4.76406 4.78698 4.87005 4.90299 4.94781 4.96364 5.02542 5.11096 5.12775 5.23892 5.27146 5.27616 5.30776 5.38513 5.43283 5.62446 5.65775 5.68391 5.78972 6.05986 6.73709 7.00895 7.29858 8.86308 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.002244 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.354568 B =12476.044361 C =12730.727025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.127 0.873 4 C -0.096 4.096 5 C -0.078 4.078 6 C -0.131 4.131 7 C 0.107 3.893 8 N -0.996 5.996 9 S 2.610 3.390 10 O -0.997 6.997 11 O -0.998 6.998 12 C -0.586 4.586 13 C 0.019 3.981 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.936 5.936 18 Si 0.976 3.024 19 H -0.254 1.254 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.109 3.891 23 C -0.127 4.127 24 C 0.482 3.518 25 O -0.557 6.557 26 O -0.513 6.513 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.267 0.733 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.045 0.955 45 H 0.095 0.905 46 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.918 -9.816 25.579 29.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.144 0.856 4 C -0.134 4.134 5 C -0.096 4.096 6 C -0.170 4.170 7 C -0.017 4.017 8 N -0.836 5.836 9 S 2.708 3.292 10 O -0.987 6.987 11 O -0.988 6.988 12 C -0.718 4.718 13 C -0.020 4.020 14 C -0.575 4.575 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.575 5.575 18 Si 0.800 3.200 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.205 1.205 22 C -0.015 4.015 23 C -0.166 4.166 24 C 0.327 3.673 25 O -0.448 6.448 26 O -0.326 6.326 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -9.815 -9.907 25.036 28.658 hybrid contribution 0.136 0.162 -0.530 0.571 sum -9.678 -9.745 24.505 28.092 Atomic orbital electron populations 1.21842 0.90198 1.03210 1.04693 1.21208 0.99646 1.01454 0.87979 0.85563 1.21478 1.00824 0.99107 0.91963 1.21165 1.02005 0.93811 0.92641 1.22055 1.00174 0.96620 0.98117 1.21746 1.03181 0.93625 0.83167 1.57564 1.71737 1.23989 1.30283 1.04736 0.76263 0.73651 0.74507 1.93475 1.65247 1.64409 1.75542 1.93477 1.77706 1.49890 1.77747 1.30386 1.16330 1.13322 1.11747 1.18829 0.95980 0.95336 0.91817 1.21551 0.94604 1.35034 1.06338 0.90484 1.26165 0.97604 0.96993 0.99764 1.70117 1.16884 1.44808 1.25722 0.85232 0.79037 0.77796 0.77980 1.17745 1.20379 1.20451 1.21696 1.00070 0.80154 0.99595 1.21925 1.01139 0.99501 0.94012 1.24046 0.75744 0.81760 0.85778 1.90722 1.37897 1.28264 1.87908 1.84510 1.71958 1.59044 1.17077 0.90810 0.88805 0.92354 0.91036 0.92954 0.87487 0.87871 0.93463 0.90194 0.87883 0.84100 0.83987 0.97736 0.97814 0.92417 0.90372 0.88027 0.93614 0.88696 0.71449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.89 71.98 0.64 -0.25 16 2 C -0.08 -0.86 2.69 -11.54 -0.03 -0.89 16 3 H 0.13 0.96 6.32 -2.39 -0.02 0.94 16 4 C -0.10 -1.27 3.50 30.59 0.11 -1.16 16 5 C -0.08 -0.95 2.02 -10.76 -0.02 -0.97 16 6 C -0.13 -1.95 5.15 30.67 0.16 -1.79 16 7 C 0.11 1.97 6.43 86.36 0.56 2.52 16 8 N -1.00 -24.18 3.22 -513.08 -1.65 -25.83 16 9 S 2.61 94.08 5.45 -56.49 -0.31 93.77 16 10 O -1.00 -41.89 16.59 -127.65 -2.12 -44.01 16 11 O -1.00 -42.36 16.59 -127.65 -2.12 -44.48 16 12 C -0.59 -21.95 6.12 71.98 0.44 -21.51 16 13 C 0.02 1.01 4.98 29.85 0.15 1.16 16 14 C -0.54 -29.69 9.11 25.60 0.23 -29.45 16 15 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 16 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 17 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 18 Si 0.98 43.14 29.54 68.60 2.03 45.17 16 19 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.11 2.12 6.43 86.36 0.56 2.67 16 23 C -0.13 -2.09 5.36 30.67 0.16 -1.93 16 24 C 0.48 7.09 7.63 71.24 0.54 7.64 16 25 O -0.56 -12.59 16.68 21.99 0.37 -12.22 16 26 O -0.51 -4.99 13.33 -51.43 -0.69 -5.67 16 27 H 0.07 0.42 8.11 -2.39 -0.02 0.40 16 28 H 0.09 0.32 6.46 -2.39 -0.02 0.31 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.05 0.93 7.95 -2.39 -0.02 0.91 16 32 H 0.11 0.79 6.34 -2.39 -0.02 0.77 16 33 H 0.10 0.93 6.40 -2.39 -0.02 0.92 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.74 6.86 -2.39 -0.02 1.72 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.14 4.58 8.14 -2.39 -0.02 4.57 16 38 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.08 1.80 6.86 -2.39 -0.02 1.78 16 43 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.42 1.05 9.10 -74.06 -0.67 0.37 16 Total: -1.00 -83.72 379.78 0.06 -83.66 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.31 Total: 10.48 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 3.95 Total: -43.90 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.37 Total: -82.80 kcal Atomic # 8 Polarization: -101.82 SS G_CDS: -4.55 Total: -106.38 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 94.08 SS G_CDS: -0.31 Total: 93.77 kcal Total: -83.72 0.06 -83.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594574133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.667 kcal (2) G-P(sol) polarization free energy of solvation -83.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds