Wall clock time and date at job start Tue Mar 31 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47675 * 2 1 4 4 C 1.53002 * 109.46835 * 120.00559 * 2 1 3 5 5 C 1.53002 * 109.47053 * 294.21869 * 4 2 1 6 6 C 1.53038 * 109.46168 * 294.70498 * 5 4 2 7 7 C 1.53195 * 109.31179 * 178.61398 * 6 5 4 8 8 N 1.46929 * 108.77505 * 54.63082 * 7 6 5 9 9 S 1.65602 * 120.62704 * 126.37007 * 8 7 6 10 10 O 1.42094 * 104.27664 * 206.07011 * 9 8 7 11 11 O 1.42099 * 104.27883 * 333.93062 * 9 8 7 12 12 C 1.81397 * 104.44896 * 90.00093 * 9 8 7 13 13 C 1.52997 * 109.47273 * 179.97438 * 12 9 8 14 14 C 1.50696 * 109.47337 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00217 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00122 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00010 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00070 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46975 * 90.00027 * 18 16 14 20 20 H 1.48490 * 109.47174 * 210.00053 * 18 16 14 21 21 H 1.48501 * 109.47241 * 330.00414 * 18 16 14 22 22 C 1.46926 * 118.74053 * 306.39486 * 8 7 6 23 23 C 1.53042 * 109.45824 * 174.63190 * 5 4 2 24 24 C 1.50701 * 109.46751 * 239.99909 * 2 1 3 25 25 O 1.20826 * 120.00195 * 239.99929 * 24 2 1 26 26 O 1.34228 * 119.99795 * 60.00349 * 24 2 1 27 27 H 1.09005 * 109.46985 * 305.88443 * 1 2 3 28 28 H 1.08999 * 109.47197 * 65.87514 * 1 2 3 29 29 H 1.08993 * 109.47881 * 185.88317 * 1 2 3 30 30 H 1.09006 * 109.46921 * 174.22395 * 4 2 1 31 31 H 1.08994 * 109.47260 * 54.22377 * 4 2 1 32 32 H 1.09003 * 109.44719 * 54.66988 * 5 4 2 33 33 H 1.08995 * 109.50138 * 58.66046 * 6 5 4 34 34 H 1.09003 * 109.49550 * 298.56048 * 6 5 4 35 35 H 1.08997 * 109.58697 * 174.42243 * 7 6 5 36 36 H 1.08999 * 109.58575 * 294.70179 * 7 6 5 37 37 H 1.09004 * 109.47350 * 299.99718 * 12 9 8 38 38 H 1.08998 * 109.47110 * 59.99833 * 12 9 8 39 39 H 1.09003 * 109.47239 * 299.99836 * 13 12 9 40 40 H 1.08998 * 109.47043 * 59.99970 * 13 12 9 41 41 H 0.96999 * 119.99704 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.58181 * 173.39878 * 22 8 7 43 43 H 1.09004 * 109.58185 * 293.82005 * 22 8 7 44 44 H 1.09000 * 109.49772 * 61.44258 * 23 5 4 45 45 H 1.08997 * 109.49880 * 301.33712 * 23 5 4 46 46 H 0.96705 * 117.00218 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6520 0.0788 2.4943 6 6 2.3826 1.4235 2.4843 7 6 1.9653 2.2359 3.7143 8 7 2.2043 1.4280 4.9180 9 16 3.1133 2.0242 6.1673 10 8 3.6367 0.8664 6.8035 11 8 3.9729 2.9744 5.5531 12 6 1.9129 2.8544 7.2444 13 6 2.6388 3.4535 8.4507 14 6 1.6417 4.1438 9.3452 15 1 0.5949 4.1546 9.0797 16 6 2.0659 4.7625 10.5020 17 7 3.3408 4.7506 10.8246 18 14 0.8299 5.6188 11.6105 19 1 0.3110 4.6530 12.6122 20 1 1.4919 6.7493 12.3095 21 1 -0.2960 6.1346 10.7909 22 6 1.6221 0.0811 4.9920 23 6 2.0433 -0.7072 3.7478 24 6 2.0322 -0.7104 -1.2305 25 8 2.7268 -1.6928 -1.1197 26 8 1.7079 -0.2518 -2.4496 27 1 -0.3633 0.6024 0.8327 28 1 -0.3633 0.4200 -0.9379 29 1 -0.3634 -1.0221 0.1053 30 1 3.1250 -0.8118 1.1990 31 1 1.5946 -1.7148 1.3023 32 1 0.5755 0.2504 2.4946 33 1 2.1215 1.9727 1.5798 34 1 3.4589 1.2529 2.5091 35 1 2.5553 3.1509 3.7651 36 1 0.9069 2.4870 3.6444 37 1 1.4145 3.6488 6.6887 38 1 1.1727 2.1320 7.5883 39 1 3.1369 2.6589 9.0064 40 1 3.3793 4.1758 8.1072 41 1 3.6391 5.1856 11.6387 42 1 1.9858 -0.4255 5.8860 43 1 0.5351 0.1543 5.0276 44 1 3.1228 -0.8576 3.7607 45 1 1.5406 -1.6743 3.7425 46 1 2.0539 -0.7405 -3.2089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594574134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:37 Heat of formation + Delta-G solvation = -193.568920 kcal Electronic energy + Delta-G solvation = -27171.747542 eV Core-core repulsion = 23187.362709 eV Total energy + Delta-G solvation = -3984.384834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83893 -39.02747 -36.65899 -36.61265 -35.67062 -35.37209 -33.88793 -32.18595 -31.15703 -31.13602 -27.44816 -25.62596 -25.40023 -23.55599 -22.96075 -21.57713 -20.78021 -19.91386 -18.50468 -18.37757 -17.61595 -17.03230 -16.51085 -16.18567 -15.87269 -15.49049 -15.05141 -14.63127 -14.59173 -14.42513 -14.35284 -13.91949 -13.70409 -13.38763 -13.30051 -12.99534 -12.65677 -12.51060 -12.29024 -11.92375 -11.77652 -11.75579 -11.69732 -11.61293 -11.54526 -11.46522 -11.20532 -11.08634 -10.96818 -10.93176 -10.69463 -10.48210 -10.45181 -10.39315 -10.37464 -9.76053 -9.32615 -8.75642 -8.50981 -6.12965 -4.18588 0.76278 1.82537 2.62697 3.03575 3.25421 3.31655 3.34321 4.18928 4.29209 4.37226 4.40665 4.46636 4.56686 4.58190 4.73606 4.82315 4.98997 5.03665 5.11464 5.22080 5.24642 5.26283 5.33871 5.39706 5.48813 5.56909 5.60552 5.61707 5.69075 5.71273 5.73821 5.78080 5.88815 5.93331 5.98361 6.11594 6.22289 6.27345 6.49169 6.70969 7.29655 7.35723 7.49851 7.79966 8.17150 8.84833 9.46120 10.98030 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030053 B = 0.002244 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.466075 B =12476.856975 C =12730.692602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.114 0.886 4 C -0.102 4.102 5 C -0.086 4.086 6 C -0.131 4.131 7 C 0.118 3.882 8 N -1.006 6.006 9 S 2.590 3.410 10 O -0.964 6.964 11 O -0.965 6.965 12 C -0.589 4.589 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.118 3.882 23 C -0.125 4.125 24 C 0.481 3.519 25 O -0.515 6.515 26 O -0.518 6.518 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 -10.055 -23.979 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.131 0.869 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.170 4.170 7 C -0.008 4.008 8 N -0.843 5.843 9 S 2.689 3.311 10 O -0.955 6.955 11 O -0.955 6.955 12 C -0.723 4.723 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.007 4.007 23 C -0.165 4.165 24 C 0.323 3.677 25 O -0.402 6.402 26 O -0.330 6.330 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.500 -10.168 -23.417 26.344 hybrid contribution -0.992 0.317 0.191 1.059 sum -7.492 -9.851 -23.226 26.318 Atomic orbital electron populations 1.21835 0.91830 1.03122 1.03565 1.21157 0.98461 1.01389 0.89443 0.86869 1.21599 1.02257 0.98828 0.91226 1.21181 1.00624 0.94955 0.93714 1.22016 1.01335 0.95850 0.97773 1.21381 1.01216 0.94211 0.83945 1.57951 1.71271 1.23755 1.31325 1.05679 0.76344 0.74743 0.74304 1.93525 1.77193 1.48415 1.76345 1.93523 1.63094 1.64134 1.74768 1.30496 1.15775 1.12251 1.13731 1.18962 0.96046 0.96661 0.89475 1.21001 0.93785 1.35016 1.06130 0.92068 1.25081 0.95454 0.96203 0.97823 1.69957 1.14152 1.43673 1.25053 0.86463 0.81014 0.79200 0.80560 1.20464 1.21006 1.19777 1.21397 0.97982 0.81887 0.99466 1.21892 1.02422 0.98284 0.93854 1.23681 0.76739 0.82463 0.84833 1.90733 1.35900 1.26302 1.87299 1.84543 1.72310 1.59116 1.16989 0.90425 0.91354 0.92008 0.90694 0.90860 0.90321 0.90873 0.91104 0.88733 0.91595 0.86331 0.86328 0.94896 0.94896 0.92525 0.88688 0.91601 0.91171 0.90796 0.73281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.79 37.16 0.33 -0.40 16 2 C -0.09 -0.55 2.70 -91.77 -0.25 -0.79 16 3 H 0.11 0.62 6.30 -51.93 -0.33 0.29 16 4 C -0.10 -0.76 3.50 -26.73 -0.09 -0.86 16 5 C -0.09 -0.66 2.03 -90.58 -0.18 -0.84 16 6 C -0.13 -1.14 5.16 -26.61 -0.14 -1.27 16 7 C 0.12 1.24 6.43 -3.71 -0.02 1.22 16 8 N -1.01 -13.01 3.22 -113.52 -0.37 -13.37 16 9 S 2.59 46.08 5.45 -107.50 -0.59 45.49 16 10 O -0.96 -19.78 16.59 -57.54 -0.95 -20.73 16 11 O -0.96 -19.70 16.59 -57.54 -0.95 -20.66 16 12 C -0.59 -11.17 6.12 37.16 0.23 -10.95 16 13 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 14 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 18 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.12 1.28 6.43 -3.71 -0.02 1.25 16 23 C -0.13 -1.15 5.36 -26.61 -0.14 -1.29 16 24 C 0.48 3.88 7.63 36.01 0.27 4.16 16 25 O -0.51 -5.90 16.66 -18.75 -0.31 -6.21 16 26 O -0.52 -3.04 13.22 -39.25 -0.52 -3.56 16 27 H 0.08 0.33 6.76 -51.93 -0.35 -0.02 16 28 H 0.07 0.32 7.97 -51.93 -0.41 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.68 7.93 -51.93 -0.41 0.26 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.50 6.49 -51.93 -0.34 0.16 16 33 H 0.07 0.47 6.40 -51.93 -0.33 0.14 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.10 6.86 -51.93 -0.36 0.74 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 38 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.09 1.13 6.86 -51.93 -0.36 0.78 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.41 0.84 9.10 45.56 0.41 1.26 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -36.95 379.85 -9.49 -46.44 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.66 Total: -1.15 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -0.57 Total: -22.36 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.37 Total: -39.11 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -2.74 Total: -51.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.59 Total: 45.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.95 -9.49 -46.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594574134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.131 kcal (2) G-P(sol) polarization free energy of solvation -36.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds