Wall clock time and date at job start Tue Mar 31 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47675 * 2 1 4 4 C 1.53002 * 109.46835 * 120.00559 * 2 1 3 5 5 C 1.53002 * 109.47053 * 294.21869 * 4 2 1 6 6 C 1.53038 * 109.46168 * 294.70498 * 5 4 2 7 7 C 1.53195 * 109.31179 * 178.61398 * 6 5 4 8 8 N 1.46929 * 108.77505 * 54.63082 * 7 6 5 9 9 S 1.65602 * 120.62704 * 126.37007 * 8 7 6 10 10 O 1.42094 * 104.27664 * 206.07011 * 9 8 7 11 11 O 1.42099 * 104.27883 * 333.93062 * 9 8 7 12 12 C 1.81397 * 104.44896 * 90.00093 * 9 8 7 13 13 C 1.52997 * 109.47273 * 179.97438 * 12 9 8 14 14 C 1.50696 * 109.47337 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00217 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00122 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00010 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00070 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46975 * 90.00027 * 18 16 14 20 20 H 1.48490 * 109.47174 * 210.00053 * 18 16 14 21 21 H 1.48501 * 109.47241 * 330.00414 * 18 16 14 22 22 C 1.46926 * 118.74053 * 306.39486 * 8 7 6 23 23 C 1.53042 * 109.45824 * 174.63190 * 5 4 2 24 24 C 1.50701 * 109.46751 * 239.99909 * 2 1 3 25 25 O 1.20826 * 120.00195 * 239.99929 * 24 2 1 26 26 O 1.34228 * 119.99795 * 60.00349 * 24 2 1 27 27 H 1.09005 * 109.46985 * 305.88443 * 1 2 3 28 28 H 1.08999 * 109.47197 * 65.87514 * 1 2 3 29 29 H 1.08993 * 109.47881 * 185.88317 * 1 2 3 30 30 H 1.09006 * 109.46921 * 174.22395 * 4 2 1 31 31 H 1.08994 * 109.47260 * 54.22377 * 4 2 1 32 32 H 1.09003 * 109.44719 * 54.66988 * 5 4 2 33 33 H 1.08995 * 109.50138 * 58.66046 * 6 5 4 34 34 H 1.09003 * 109.49550 * 298.56048 * 6 5 4 35 35 H 1.08997 * 109.58697 * 174.42243 * 7 6 5 36 36 H 1.08999 * 109.58575 * 294.70179 * 7 6 5 37 37 H 1.09004 * 109.47350 * 299.99718 * 12 9 8 38 38 H 1.08998 * 109.47110 * 59.99833 * 12 9 8 39 39 H 1.09003 * 109.47239 * 299.99836 * 13 12 9 40 40 H 1.08998 * 109.47043 * 59.99970 * 13 12 9 41 41 H 0.96999 * 119.99704 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.58181 * 173.39878 * 22 8 7 43 43 H 1.09004 * 109.58185 * 293.82005 * 22 8 7 44 44 H 1.09000 * 109.49772 * 61.44258 * 23 5 4 45 45 H 1.08997 * 109.49880 * 301.33712 * 23 5 4 46 46 H 0.96705 * 117.00218 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6520 0.0788 2.4943 6 6 2.3826 1.4235 2.4843 7 6 1.9653 2.2359 3.7143 8 7 2.2043 1.4280 4.9180 9 16 3.1133 2.0242 6.1673 10 8 3.6367 0.8664 6.8035 11 8 3.9729 2.9744 5.5531 12 6 1.9129 2.8544 7.2444 13 6 2.6388 3.4535 8.4507 14 6 1.6417 4.1438 9.3452 15 1 0.5949 4.1546 9.0797 16 6 2.0659 4.7625 10.5020 17 7 3.3408 4.7506 10.8246 18 14 0.8299 5.6188 11.6105 19 1 0.3110 4.6530 12.6122 20 1 1.4919 6.7493 12.3095 21 1 -0.2960 6.1346 10.7909 22 6 1.6221 0.0811 4.9920 23 6 2.0433 -0.7072 3.7478 24 6 2.0322 -0.7104 -1.2305 25 8 2.7268 -1.6928 -1.1197 26 8 1.7079 -0.2518 -2.4496 27 1 -0.3633 0.6024 0.8327 28 1 -0.3633 0.4200 -0.9379 29 1 -0.3634 -1.0221 0.1053 30 1 3.1250 -0.8118 1.1990 31 1 1.5946 -1.7148 1.3023 32 1 0.5755 0.2504 2.4946 33 1 2.1215 1.9727 1.5798 34 1 3.4589 1.2529 2.5091 35 1 2.5553 3.1509 3.7651 36 1 0.9069 2.4870 3.6444 37 1 1.4145 3.6488 6.6887 38 1 1.1727 2.1320 7.5883 39 1 3.1369 2.6589 9.0064 40 1 3.3793 4.1758 8.1072 41 1 3.6391 5.1856 11.6387 42 1 1.9858 -0.4255 5.8860 43 1 0.5351 0.1543 5.0276 44 1 3.1228 -0.8576 3.7607 45 1 1.5406 -1.6743 3.7425 46 1 2.0539 -0.7405 -3.2089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594574134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:36 Heat of formation + Delta-G solvation = -220.586095 kcal Electronic energy + Delta-G solvation = -27172.919095 eV Core-core repulsion = 23187.362709 eV Total energy + Delta-G solvation = -3985.556386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43954 -39.77631 -38.20687 -37.20056 -36.98515 -36.31079 -35.88524 -33.12008 -32.89057 -31.92078 -28.10366 -27.53960 -25.99791 -24.33650 -23.84978 -23.33769 -21.52929 -20.55589 -19.70086 -19.10147 -18.94471 -18.34670 -17.62220 -17.16734 -17.04593 -16.75582 -16.53193 -15.76817 -15.66234 -15.26768 -15.07492 -14.97037 -14.73269 -14.44571 -14.33407 -14.06280 -13.73078 -13.68605 -13.25280 -13.17152 -13.04275 -12.92678 -12.85915 -12.79654 -12.75956 -12.52636 -12.24595 -12.22077 -12.13326 -12.07363 -12.03437 -11.74935 -11.64273 -11.31133 -11.23551 -11.13317 -11.04814 -10.64931 -9.82996 -8.25928 -6.40309 -0.67860 1.23228 1.41107 1.43204 1.54340 1.80106 2.16877 2.38286 2.89564 3.07222 3.21052 3.64017 3.69211 3.83117 3.96218 4.06315 4.09378 4.16067 4.27508 4.30777 4.34824 4.53352 4.56022 4.64208 4.76472 4.78914 4.87694 4.90372 4.94777 4.96526 5.01025 5.11486 5.13258 5.23867 5.27160 5.27566 5.30687 5.38680 5.43142 5.61951 5.65840 5.68305 5.78926 6.06119 6.73605 7.00909 7.29949 8.86313 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030053 B = 0.002244 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.466075 B =12476.856975 C =12730.692602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.127 0.873 4 C -0.096 4.096 5 C -0.078 4.078 6 C -0.131 4.131 7 C 0.107 3.893 8 N -0.996 5.996 9 S 2.610 3.390 10 O -0.998 6.998 11 O -0.997 6.997 12 C -0.586 4.586 13 C 0.020 3.980 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.935 5.935 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.256 1.256 22 C 0.109 3.891 23 C -0.127 4.127 24 C 0.482 3.518 25 O -0.557 6.557 26 O -0.513 6.513 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.003 0.997 40 H 0.004 0.996 41 H 0.267 0.733 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.045 0.955 45 H 0.095 0.905 46 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 -9.741 -25.508 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.145 0.855 4 C -0.134 4.134 5 C -0.096 4.096 6 C -0.170 4.170 7 C -0.017 4.017 8 N -0.836 5.836 9 S 2.709 3.291 10 O -0.988 6.988 11 O -0.987 6.987 12 C -0.718 4.718 13 C -0.019 4.019 14 C -0.576 4.576 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.575 5.575 18 Si 0.799 3.201 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.180 1.180 22 C -0.015 4.015 23 C -0.166 4.166 24 C 0.327 3.673 25 O -0.448 6.448 26 O -0.326 6.326 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -10.084 -9.843 -24.968 28.670 hybrid contribution 0.141 0.163 0.527 0.570 sum -9.943 -9.680 -24.440 28.105 Atomic orbital electron populations 1.21842 0.90184 1.03426 1.04504 1.21211 0.99648 1.01448 0.87975 0.85546 1.21491 1.00868 0.99046 0.91969 1.21150 1.01961 0.93831 0.92644 1.22056 1.00129 0.96665 0.98123 1.21740 1.03272 0.93581 0.83125 1.57568 1.70926 1.24741 1.30344 1.04730 0.76197 0.73707 0.74507 1.93475 1.78234 1.49416 1.77697 1.93475 1.64595 1.65259 1.75354 1.30385 1.16140 1.13485 1.11779 1.18820 0.95868 0.95397 0.91837 1.21520 0.94817 1.34761 1.06551 0.90486 1.26167 0.97489 0.97081 0.99764 1.70112 1.16574 1.44968 1.25842 0.85283 0.78530 0.77877 0.78380 1.19589 1.20923 1.17982 1.21705 0.99801 0.80412 0.99588 1.21926 1.01210 0.99425 0.94019 1.24051 0.75746 0.81757 0.85787 1.90724 1.37903 1.28261 1.87913 1.84508 1.71936 1.59073 1.17081 0.88822 0.90930 0.92192 0.92976 0.91010 0.87513 0.87887 0.93486 0.90200 0.87880 0.83994 0.84093 0.97826 0.97752 0.92418 0.90355 0.88028 0.93623 0.88685 0.71439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.79 71.98 0.63 -0.26 16 2 C -0.08 -0.86 2.70 -11.54 -0.03 -0.89 16 3 H 0.13 0.96 6.30 -2.39 -0.02 0.94 16 4 C -0.10 -1.27 3.50 30.60 0.11 -1.16 16 5 C -0.08 -0.95 2.03 -10.77 -0.02 -0.97 16 6 C -0.13 -1.95 5.16 30.67 0.16 -1.79 16 7 C 0.11 1.97 6.43 86.36 0.56 2.53 16 8 N -1.00 -24.21 3.22 -513.06 -1.65 -25.86 16 9 S 2.61 94.16 5.45 -56.49 -0.31 93.85 16 10 O -1.00 -42.38 16.59 -127.65 -2.12 -44.50 16 11 O -1.00 -41.93 16.59 -127.65 -2.12 -44.05 16 12 C -0.59 -21.96 6.12 71.98 0.44 -21.52 16 13 C 0.02 1.03 4.98 29.85 0.15 1.18 16 14 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 15 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 16 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 17 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 18 Si 0.98 43.12 29.54 68.60 2.03 45.14 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 C 0.11 2.12 6.43 86.36 0.56 2.68 16 23 C -0.13 -2.09 5.36 30.67 0.16 -1.93 16 24 C 0.48 7.09 7.63 71.24 0.54 7.63 16 25 O -0.56 -12.60 16.66 21.96 0.37 -12.23 16 26 O -0.51 -4.98 13.22 -51.39 -0.68 -5.66 16 27 H 0.09 0.31 6.76 -2.38 -0.02 0.29 16 28 H 0.07 0.42 7.97 -2.39 -0.02 0.41 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.93 7.93 -2.38 -0.02 0.91 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.79 6.49 -2.39 -0.02 0.77 16 33 H 0.10 0.94 6.40 -2.39 -0.02 0.92 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.74 6.86 -2.39 -0.02 1.73 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 38 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 42 H 0.08 1.81 6.86 -2.39 -0.02 1.79 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 46 H 0.42 1.04 9.10 -74.05 -0.67 0.37 16 Total: -1.00 -83.71 379.85 0.06 -83.65 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.31 Total: 10.59 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 3.95 Total: -43.95 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.37 Total: -82.83 kcal Atomic # 8 Polarization: -101.90 SS G_CDS: -4.55 Total: -106.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 94.16 SS G_CDS: -0.31 Total: 93.85 kcal Total: -83.71 0.06 -83.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594574134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.936 kcal (2) G-P(sol) polarization free energy of solvation -83.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds