Wall clock time and date at job start Tue Mar 31 2020 17:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46814 * 2 1 4 4 O 1.42900 * 109.47070 * 119.99966 * 2 1 3 5 5 C 1.42897 * 113.99719 * 142.50019 * 4 2 1 6 6 C 1.53001 * 110.46016 * 65.91547 * 5 4 2 7 7 S 1.81402 * 109.46885 * 64.20419 * 6 5 4 8 8 O 1.42098 * 110.54402 * 68.38088 * 7 6 5 9 9 O 1.42100 * 110.54477 * 291.62234 * 7 6 5 10 10 N 1.65609 * 104.44623 * 180.02562 * 7 6 5 11 11 C 1.36939 * 119.99843 * 269.99963 * 10 7 6 12 12 H 1.08000 * 120.00049 * 53.43674 * 11 10 7 13 13 C 1.38809 * 119.99959 * 233.44081 * 11 10 7 14 14 N 1.31624 * 120.00203 * 10.82245 * 13 11 10 15 15 Si 1.86795 * 120.00251 * 190.82791 * 13 11 10 16 16 H 1.48503 * 109.47108 * 89.99291 * 15 13 11 17 17 H 1.48491 * 109.47646 * 209.99686 * 15 13 11 18 18 H 1.48508 * 109.46759 * 329.99766 * 15 13 11 19 19 C 1.46502 * 119.99936 * 89.99960 * 10 7 6 20 20 C 1.52995 * 117.51635 * 178.06279 * 19 10 7 21 21 C 1.53002 * 117.49805 * 246.69319 * 19 10 7 22 22 C 1.54510 * 110.51294 * 303.30697 * 5 4 2 23 23 C 1.54478 * 104.06234 * 241.22278 * 22 5 4 24 24 O 1.44419 * 104.80481 * 23.98002 * 23 22 5 25 25 C 1.44431 * 105.27299 * 319.48499 * 24 23 22 26 26 H 1.08997 * 109.47590 * 299.99834 * 1 2 3 27 27 H 1.09000 * 109.47475 * 60.00587 * 1 2 3 28 28 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46969 * 239.99740 * 2 1 3 30 30 H 1.08999 * 109.47493 * 185.98464 * 3 2 1 31 31 H 1.09001 * 109.47185 * 305.98598 * 3 2 1 32 32 H 1.08999 * 109.47563 * 65.98106 * 3 2 1 33 33 H 1.08998 * 109.46947 * 304.21009 * 6 5 4 34 34 H 1.08994 * 109.47169 * 184.20341 * 6 5 4 35 35 H 0.96994 * 120.00004 * 184.97965 * 14 13 11 36 36 H 1.09000 * 115.54969 * 32.36177 * 19 10 7 37 37 H 1.08994 * 117.50269 * 214.96987 * 20 19 10 38 38 H 1.09002 * 117.50289 * 359.97438 * 20 19 10 39 39 H 1.09004 * 117.49824 * 359.97438 * 21 19 10 40 40 H 1.08996 * 117.49896 * 144.99768 * 21 19 10 41 41 H 1.09002 * 110.50902 * 359.86850 * 22 5 4 42 42 H 1.08997 * 110.51074 * 122.43313 * 22 5 4 43 43 H 1.09003 * 110.37150 * 142.81068 * 23 22 5 44 44 H 1.09000 * 110.36843 * 265.03269 * 23 22 5 45 45 H 1.08998 * 110.37205 * 281.67841 * 25 24 23 46 46 H 1.09005 * 110.36797 * 159.34628 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1765 -1.4632 0.9450 6 6 4.3654 -0.5688 0.5878 7 16 4.7616 0.5017 1.9977 8 8 5.2811 -0.2649 3.0754 9 8 3.7275 1.4536 2.2071 10 7 6.0493 1.4058 1.4809 11 6 7.3268 0.9560 1.6832 12 1 7.6115 -0.0304 1.3480 13 6 8.2559 1.7679 2.3192 14 7 7.8644 2.8743 2.9151 15 14 10.0617 1.2904 2.3294 16 1 10.7347 1.8740 1.1412 17 1 10.7034 1.8066 3.5650 18 1 10.1827 -0.1892 2.2898 19 6 5.8217 2.6867 0.8072 20 6 7.0523 3.4965 0.3941 21 6 6.2108 2.7874 -0.6690 22 6 2.9255 -2.5015 -0.1714 23 6 3.1255 -3.8630 0.5304 24 8 2.8772 -3.5978 1.9281 25 6 3.4985 -2.3203 2.1892 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1246 1.4445 -0.1071 31 1 1.5917 1.9863 -0.8315 32 1 1.7667 1.9245 0.9386 33 1 4.1109 0.0463 -0.2752 34 1 5.2287 -1.1901 0.3495 35 1 8.5208 3.4780 3.2967 36 1 4.9416 3.2402 1.1346 37 1 6.9819 4.5827 0.4496 38 1 8.0316 3.0766 0.6238 39 1 6.6366 1.9008 -1.1390 40 1 5.5868 3.4072 -1.3128 41 1 1.9080 -2.4140 -0.5525 42 1 3.6468 -2.3759 -0.9789 43 1 2.4120 -4.5942 0.1503 44 1 4.1456 -4.2185 0.3852 45 1 4.5764 -2.4383 2.3002 46 1 3.0715 -1.8665 3.0835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595305294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:03 Heat of formation + Delta-G solvation = -114.833569 kcal Electronic energy + Delta-G solvation = -30000.079264 eV Core-core repulsion = 26019.108652 eV Total energy + Delta-G solvation = -3980.970613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.23240 -37.54908 -37.16547 -35.86600 -34.66878 -33.24059 -32.79880 -31.53757 -30.90884 -29.88071 -27.29606 -26.17938 -24.79305 -23.16289 -21.63734 -21.32684 -20.69996 -19.89534 -18.49393 -17.49262 -16.91878 -16.59312 -16.21778 -15.65747 -15.24543 -15.15223 -15.01246 -14.72090 -14.49250 -14.05082 -13.80526 -13.52795 -13.37415 -12.94625 -12.61044 -12.32066 -12.25593 -12.14245 -11.99877 -11.71187 -11.63474 -11.39784 -11.34581 -11.28242 -11.10976 -10.84804 -10.80528 -10.73155 -10.63234 -10.45977 -10.38380 -10.29097 -10.03872 -9.80107 -9.70845 -9.41688 -9.17159 -8.58618 -7.48053 -6.28214 -4.17968 1.30961 3.15698 3.24523 3.26101 3.50147 3.83957 3.92644 4.27051 4.39799 4.63334 4.64686 4.83653 4.88975 4.96356 4.98323 5.09292 5.15331 5.21519 5.29596 5.32454 5.46951 5.56539 5.60950 5.71709 5.75456 5.78466 5.83391 5.90150 5.94575 5.97070 6.01214 6.06393 6.11110 6.20712 6.28240 6.43277 6.61497 6.70215 6.74118 6.96829 7.26599 7.30773 7.43044 7.69028 8.35977 8.96852 9.37470 10.73332 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.005226 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.816498 B = 5356.236684 C = 6330.572960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 C -0.175 4.175 4 O -0.356 6.356 5 C 0.104 3.896 6 C -0.671 4.671 7 S 2.568 3.432 8 O -0.958 6.958 9 O -0.973 6.973 10 N -0.816 5.816 11 C -0.300 4.300 12 H 0.080 0.920 13 C 0.056 3.944 14 N -0.837 5.837 15 Si 0.906 3.094 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.267 1.267 19 C 0.115 3.885 20 C -0.136 4.136 21 C -0.231 4.231 22 C -0.176 4.176 23 C 0.045 3.955 24 O -0.364 6.364 25 C 0.040 3.960 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.268 0.732 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -5.784 -10.015 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 C -0.233 4.233 4 O -0.275 6.275 5 C 0.062 3.938 6 C -0.794 4.794 7 S 2.667 3.333 8 O -0.948 6.948 9 O -0.963 6.963 10 N -0.644 5.644 11 C -0.437 4.437 12 H 0.098 0.902 13 C -0.155 4.155 14 N -0.472 5.472 15 Si 0.732 3.268 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.191 1.191 19 C 0.006 3.994 20 C -0.175 4.175 21 C -0.272 4.272 22 C -0.214 4.214 23 C -0.032 4.032 24 O -0.283 6.283 25 C -0.037 4.037 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.673 -5.823 -8.651 13.564 hybrid contribution 1.411 -0.129 -1.196 1.854 sum -7.262 -5.952 -9.847 13.606 Atomic orbital electron populations 1.21910 0.93934 1.02263 1.02657 1.22190 0.94695 0.93339 0.87972 1.22503 1.01518 0.95665 1.03588 1.88092 1.42123 1.63210 1.34095 1.22439 0.84761 0.90290 0.96296 1.31547 1.05979 1.16240 1.25634 1.07461 0.74356 0.75572 0.75944 1.93464 1.78574 1.73888 1.48909 1.93436 1.60461 1.57872 1.84503 1.52068 1.16268 1.27315 1.68717 1.18855 0.85751 1.02991 1.36111 0.90245 1.25607 1.00303 0.96554 0.93042 1.70114 1.34531 1.11166 1.31403 0.86278 0.83103 0.79522 0.77905 1.20167 1.20648 1.19092 1.21074 0.99191 0.89093 0.90035 1.22939 0.98128 0.96491 0.99903 1.23460 1.06686 1.03503 0.93531 1.23629 1.03709 0.95294 0.98779 1.23377 1.01337 0.96446 0.82057 1.89152 1.77075 1.36602 1.25422 1.23857 0.99757 0.82978 0.97059 0.91444 0.91435 0.92385 0.92045 0.92406 0.92396 0.89495 0.84991 0.84840 0.92197 0.87180 0.90868 0.87099 0.89540 0.90559 0.89442 0.89437 0.88882 0.91816 0.88584 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.56 37.16 0.36 -1.36 16 2 C 0.08 1.04 2.28 -26.73 -0.06 0.98 16 3 C -0.18 -2.62 7.83 37.16 0.29 -2.33 16 4 O -0.36 -6.00 9.06 -35.66 -0.32 -6.32 16 5 C 0.10 1.64 0.73 -89.05 -0.06 1.58 16 6 C -0.67 -11.17 4.32 37.16 0.16 -11.01 16 7 S 2.57 57.16 4.69 -107.50 -0.50 56.65 16 8 O -0.96 -24.40 15.39 -57.54 -0.89 -25.29 16 9 O -0.97 -22.91 13.32 -59.53 -0.79 -23.71 16 10 N -0.82 -19.22 2.94 -53.43 -0.16 -19.38 16 11 C -0.30 -7.50 8.10 -15.06 -0.12 -7.63 16 12 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 13 C 0.06 1.41 3.26 -17.43 -0.06 1.35 16 14 N -0.84 -22.18 11.41 55.49 0.63 -21.55 16 15 Si 0.91 19.46 29.56 -169.99 -5.03 14.43 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C 0.11 2.51 5.75 -67.93 -0.39 2.12 16 20 C -0.14 -2.84 8.30 -26.73 -0.22 -3.06 16 21 C -0.23 -4.22 10.38 -26.73 -0.28 -4.50 16 22 C -0.18 -2.14 5.47 -25.16 -0.14 -2.28 16 23 C 0.04 0.54 7.63 37.93 0.29 0.83 16 24 O -0.36 -5.79 11.65 -35.23 -0.41 -6.20 16 25 C 0.04 0.69 5.49 37.93 0.21 0.90 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.74 6.11 -51.93 -0.32 0.42 16 30 H 0.06 0.92 4.74 -51.93 -0.25 0.67 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.49 7.33 -51.93 -0.38 1.11 16 33 H 0.13 1.98 5.54 -51.93 -0.29 1.69 16 34 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 35 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 36 H 0.11 2.43 7.40 -51.93 -0.38 2.04 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.11 2.54 5.25 -51.93 -0.27 2.27 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 0.97 6.79 -51.93 -0.35 0.62 16 42 H 0.09 0.92 7.73 -51.93 -0.40 0.51 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.65 7.03 -51.93 -0.37 1.29 16 46 H 0.11 1.98 8.09 -51.93 -0.42 1.56 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -31.05 362.05 -9.24 -40.29 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.20 Total: 10.01 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -0.03 Total: -24.41 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.48 Total: -40.93 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -2.41 Total: -61.51 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Atomic # 16 Polarization: 57.16 SS G_CDS: -0.50 Total: 56.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.05 -9.24 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.541 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds