Wall clock time and date at job start Tue Mar 31 2020 17:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46814 * 2 1 4 4 O 1.42900 * 109.47070 * 119.99966 * 2 1 3 5 5 C 1.42897 * 113.99719 * 142.50019 * 4 2 1 6 6 C 1.53001 * 110.46016 * 65.91547 * 5 4 2 7 7 S 1.81402 * 109.46885 * 64.20419 * 6 5 4 8 8 O 1.42098 * 110.54402 * 68.38088 * 7 6 5 9 9 O 1.42100 * 110.54477 * 291.62234 * 7 6 5 10 10 N 1.65609 * 104.44623 * 180.02562 * 7 6 5 11 11 C 1.36939 * 119.99843 * 269.99963 * 10 7 6 12 12 H 1.08000 * 120.00049 * 53.43674 * 11 10 7 13 13 C 1.38809 * 119.99959 * 233.44081 * 11 10 7 14 14 N 1.31624 * 120.00203 * 10.82245 * 13 11 10 15 15 Si 1.86795 * 120.00251 * 190.82791 * 13 11 10 16 16 H 1.48503 * 109.47108 * 89.99291 * 15 13 11 17 17 H 1.48491 * 109.47646 * 209.99686 * 15 13 11 18 18 H 1.48508 * 109.46759 * 329.99766 * 15 13 11 19 19 C 1.46502 * 119.99936 * 89.99960 * 10 7 6 20 20 C 1.52995 * 117.51635 * 178.06279 * 19 10 7 21 21 C 1.53002 * 117.49805 * 246.69319 * 19 10 7 22 22 C 1.54510 * 110.51294 * 303.30697 * 5 4 2 23 23 C 1.54478 * 104.06234 * 241.22278 * 22 5 4 24 24 O 1.44419 * 104.80481 * 23.98002 * 23 22 5 25 25 C 1.44431 * 105.27299 * 319.48499 * 24 23 22 26 26 H 1.08997 * 109.47590 * 299.99834 * 1 2 3 27 27 H 1.09000 * 109.47475 * 60.00587 * 1 2 3 28 28 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46969 * 239.99740 * 2 1 3 30 30 H 1.08999 * 109.47493 * 185.98464 * 3 2 1 31 31 H 1.09001 * 109.47185 * 305.98598 * 3 2 1 32 32 H 1.08999 * 109.47563 * 65.98106 * 3 2 1 33 33 H 1.08998 * 109.46947 * 304.21009 * 6 5 4 34 34 H 1.08994 * 109.47169 * 184.20341 * 6 5 4 35 35 H 0.96994 * 120.00004 * 184.97965 * 14 13 11 36 36 H 1.09000 * 115.54969 * 32.36177 * 19 10 7 37 37 H 1.08994 * 117.50269 * 214.96987 * 20 19 10 38 38 H 1.09002 * 117.50289 * 359.97438 * 20 19 10 39 39 H 1.09004 * 117.49824 * 359.97438 * 21 19 10 40 40 H 1.08996 * 117.49896 * 144.99768 * 21 19 10 41 41 H 1.09002 * 110.50902 * 359.86850 * 22 5 4 42 42 H 1.08997 * 110.51074 * 122.43313 * 22 5 4 43 43 H 1.09003 * 110.37150 * 142.81068 * 23 22 5 44 44 H 1.09000 * 110.36843 * 265.03269 * 23 22 5 45 45 H 1.08998 * 110.37205 * 281.67841 * 25 24 23 46 46 H 1.09005 * 110.36797 * 159.34628 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1765 -1.4632 0.9450 6 6 4.3654 -0.5688 0.5878 7 16 4.7616 0.5017 1.9977 8 8 5.2811 -0.2649 3.0754 9 8 3.7275 1.4536 2.2071 10 7 6.0493 1.4058 1.4809 11 6 7.3268 0.9560 1.6832 12 1 7.6115 -0.0304 1.3480 13 6 8.2559 1.7679 2.3192 14 7 7.8644 2.8743 2.9151 15 14 10.0617 1.2904 2.3294 16 1 10.7347 1.8740 1.1412 17 1 10.7034 1.8066 3.5650 18 1 10.1827 -0.1892 2.2898 19 6 5.8217 2.6867 0.8072 20 6 7.0523 3.4965 0.3941 21 6 6.2108 2.7874 -0.6690 22 6 2.9255 -2.5015 -0.1714 23 6 3.1255 -3.8630 0.5304 24 8 2.8772 -3.5978 1.9281 25 6 3.4985 -2.3203 2.1892 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1246 1.4445 -0.1071 31 1 1.5917 1.9863 -0.8315 32 1 1.7667 1.9245 0.9386 33 1 4.1109 0.0463 -0.2752 34 1 5.2287 -1.1901 0.3495 35 1 8.5208 3.4780 3.2967 36 1 4.9416 3.2402 1.1346 37 1 6.9819 4.5827 0.4496 38 1 8.0316 3.0766 0.6238 39 1 6.6366 1.9008 -1.1390 40 1 5.5868 3.4072 -1.3128 41 1 1.9080 -2.4140 -0.5525 42 1 3.6468 -2.3759 -0.9789 43 1 2.4120 -4.5942 0.1503 44 1 4.1456 -4.2185 0.3852 45 1 4.5764 -2.4383 2.3002 46 1 3.0715 -1.8665 3.0835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595305294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:01 Heat of formation + Delta-G solvation = -136.813739 kcal Electronic energy + Delta-G solvation = -30001.032396 eV Core-core repulsion = 26019.108652 eV Total energy + Delta-G solvation = -3981.923744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.38982 -38.85446 -38.69730 -37.68413 -36.50309 -34.57876 -34.35788 -32.80093 -32.62113 -30.97321 -28.38947 -27.43510 -26.65008 -24.18064 -22.90285 -22.75798 -22.37922 -21.04187 -20.23880 -18.89009 -18.50727 -18.27489 -17.52597 -16.93160 -16.79372 -16.46272 -16.42307 -16.16069 -15.93349 -15.50127 -15.23078 -15.11322 -14.44162 -14.11182 -14.05651 -13.74566 -13.50647 -13.41751 -13.29678 -13.11236 -13.09306 -12.79072 -12.72692 -12.62980 -12.55239 -12.46788 -12.38145 -12.29401 -12.03660 -11.97884 -11.94776 -11.61308 -11.48534 -11.31519 -10.84846 -10.82649 -10.66668 -10.39483 -9.23835 -8.14515 -6.10186 -0.37290 1.45623 1.48742 1.57000 2.16166 2.38683 2.52862 2.75367 3.01580 3.18300 3.21079 3.42815 3.48124 3.58281 3.69764 3.97340 4.05316 4.13903 4.19815 4.21929 4.27801 4.34825 4.38056 4.48783 4.52825 4.57119 4.58635 4.72350 4.77017 4.81693 4.87773 4.90494 4.94503 4.96943 4.99677 5.02017 5.32745 5.36661 5.51135 5.54042 5.61342 5.71544 5.93731 6.20255 6.51398 7.11380 7.51517 8.86830 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.005226 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.816498 B = 5356.236684 C = 6330.572960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 C -0.177 4.177 4 O -0.383 6.383 5 C 0.097 3.903 6 C -0.639 4.639 7 S 2.561 3.439 8 O -1.005 7.005 9 O -0.998 6.998 10 N -0.829 5.829 11 C -0.316 4.316 12 H 0.086 0.914 13 C 0.013 3.987 14 N -0.878 5.878 15 Si 0.962 3.038 16 H -0.260 1.260 17 H -0.290 1.290 18 H -0.262 1.262 19 C 0.085 3.915 20 C -0.149 4.149 21 C -0.187 4.187 22 C -0.166 4.166 23 C 0.035 3.965 24 O -0.381 6.381 25 C 0.035 3.965 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.266 0.734 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 -7.401 -13.928 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 C -0.235 4.235 4 O -0.303 6.303 5 C 0.056 3.944 6 C -0.768 4.768 7 S 2.665 3.335 8 O -0.996 6.996 9 O -0.988 6.988 10 N -0.657 5.657 11 C -0.452 4.452 12 H 0.104 0.896 13 C -0.194 4.194 14 N -0.515 5.515 15 Si 0.785 3.215 16 H -0.185 1.185 17 H -0.216 1.216 18 H -0.186 1.186 19 C -0.023 4.023 20 C -0.188 4.188 21 C -0.227 4.227 22 C -0.204 4.204 23 C -0.041 4.041 24 O -0.300 6.300 25 C -0.043 4.043 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.207 -7.390 -12.537 17.221 hybrid contribution 1.429 0.316 -0.014 1.463 sum -7.778 -7.074 -12.551 16.373 Atomic orbital electron populations 1.21929 0.92242 1.03101 1.03217 1.22498 0.96139 0.92407 0.88035 1.22514 1.00939 0.96962 1.03057 1.88100 1.42232 1.63717 1.36227 1.22546 0.84072 0.90669 0.97153 1.31204 1.07736 1.15506 1.22390 1.06977 0.73697 0.75735 0.77063 1.93411 1.79275 1.74453 1.52429 1.93415 1.60406 1.59295 1.85688 1.52115 1.16044 1.28056 1.69498 1.19149 0.86639 1.03261 1.36153 0.89623 1.26333 1.03938 0.96480 0.92644 1.70227 1.35541 1.12493 1.33240 0.85421 0.78806 0.79334 0.77901 1.18518 1.21567 1.18561 1.21114 0.99202 0.88980 0.93032 1.22872 0.97004 0.96883 1.02013 1.23493 1.04403 1.03241 0.91580 1.23648 1.05614 0.93327 0.97805 1.23744 1.03285 0.97181 0.79878 1.89134 1.77035 1.35702 1.28153 1.23733 0.99134 0.84228 0.97168 0.93150 0.88655 0.91399 0.89136 0.93666 0.89300 0.92903 0.82435 0.82477 0.92459 0.88632 0.90218 0.89157 0.88590 0.87140 0.87720 0.86698 0.85999 0.90347 0.89421 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.56 71.98 0.69 -2.28 16 2 C 0.07 1.63 2.28 30.59 0.07 1.70 16 3 C -0.18 -4.99 7.83 71.98 0.56 -4.43 16 4 O -0.38 -12.44 9.06 -148.57 -1.35 -13.78 16 5 C 0.10 2.89 0.73 -9.78 -0.01 2.88 16 6 C -0.64 -19.90 4.32 71.98 0.31 -19.59 16 7 S 2.56 116.40 4.69 -56.49 -0.27 116.14 16 8 O -1.01 -53.53 15.39 -127.65 -1.96 -55.49 16 9 O -1.00 -48.96 13.32 -125.74 -1.67 -50.63 16 10 N -0.83 -39.56 2.94 -322.94 -0.95 -40.51 16 11 C -0.32 -16.00 8.10 84.03 0.68 -15.32 16 12 H 0.09 4.08 7.85 -2.91 -0.02 4.06 16 13 C 0.01 0.66 3.26 84.86 0.28 0.94 16 14 N -0.88 -48.34 11.41 21.65 0.25 -48.10 16 15 Si 0.96 40.35 29.56 68.60 2.03 42.37 16 16 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 C 0.08 3.73 5.75 44.99 0.26 3.98 16 20 C -0.15 -6.20 8.30 30.59 0.25 -5.94 16 21 C -0.19 -6.37 10.38 30.60 0.32 -6.06 16 22 C -0.17 -3.27 5.47 31.61 0.17 -3.10 16 23 C 0.04 0.71 7.63 72.48 0.55 1.26 16 24 O -0.38 -11.62 11.65 -148.98 -1.74 -13.36 16 25 C 0.03 1.19 5.49 72.48 0.40 1.59 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.09 1.72 6.11 -2.39 -0.01 1.70 16 30 H 0.04 1.35 4.74 -2.39 -0.01 1.34 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.84 7.33 -2.39 -0.02 1.82 16 33 H 0.16 4.16 5.54 -2.39 -0.01 4.15 16 34 H 0.16 4.21 8.14 -2.39 -0.02 4.19 16 35 H 0.27 13.88 8.32 -92.71 -0.77 13.11 16 36 H 0.10 4.37 7.40 -2.39 -0.02 4.35 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 4.17 5.25 -2.39 -0.01 4.16 16 39 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 40 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.10 1.76 6.79 -2.39 -0.02 1.74 16 42 H 0.11 1.68 7.73 -2.39 -0.02 1.66 16 43 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.09 3.08 7.03 -2.39 -0.02 3.06 16 46 H 0.08 3.19 8.09 -2.38 -0.02 3.17 16 Total: -1.00 -72.28 362.05 -0.15 -72.43 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.97 Total: 35.28 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 4.54 Total: -44.36 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -0.70 Total: -88.60 kcal Atomic # 8 Polarization: -126.55 SS G_CDS: -6.72 Total: -133.27 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: 116.40 SS G_CDS: -0.27 Total: 116.14 kcal Total: -72.28 -0.15 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.386 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds