Wall clock time and date at job start Tue Mar 31 2020 17:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46760 * 2 1 4 4 O 1.42899 * 109.46984 * 119.99485 * 2 1 3 5 5 C 1.42903 * 114.00160 * 105.89565 * 4 2 1 6 6 C 1.53004 * 110.45516 * 294.53043 * 5 4 2 7 7 S 1.81404 * 109.46881 * 296.69340 * 6 5 4 8 8 O 1.42100 * 110.54212 * 68.37809 * 7 6 5 9 9 O 1.42097 * 110.54333 * 291.62334 * 7 6 5 10 10 N 1.65604 * 104.44636 * 180.02562 * 7 6 5 11 11 C 1.36934 * 119.99762 * 97.44944 * 10 7 6 12 12 H 1.08007 * 120.00091 * 236.94931 * 11 10 7 13 13 C 1.38814 * 120.00211 * 56.95097 * 11 10 7 14 14 N 1.31615 * 119.99880 * 200.95339 * 13 11 10 15 15 Si 1.86796 * 119.99840 * 20.94991 * 13 11 10 16 16 H 1.48498 * 109.47502 * 269.09420 * 15 13 11 17 17 H 1.48502 * 109.47092 * 29.09673 * 15 13 11 18 18 H 1.48503 * 109.47039 * 149.09346 * 15 13 11 19 19 C 1.46499 * 120.00134 * 277.45041 * 10 7 6 20 20 C 1.52997 * 117.49729 * 183.30750 * 19 10 7 21 21 C 1.52998 * 117.49975 * 114.64575 * 19 10 7 22 22 C 1.54504 * 110.51093 * 57.13323 * 5 4 2 23 23 C 1.54475 * 104.06502 * 118.78118 * 22 5 4 24 24 O 1.44433 * 104.80124 * 23.98012 * 23 22 5 25 25 C 1.44431 * 105.27266 * 319.48698 * 24 23 22 26 26 H 1.08994 * 109.46984 * 58.84835 * 1 2 3 27 27 H 1.09010 * 109.46745 * 178.84644 * 1 2 3 28 28 H 1.08996 * 109.47596 * 298.84071 * 1 2 3 29 29 H 1.08996 * 109.47357 * 239.99707 * 2 1 3 30 30 H 1.09000 * 109.47158 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46430 * 299.99119 * 3 2 1 32 32 H 1.08997 * 109.47772 * 59.99337 * 3 2 1 33 33 H 1.08993 * 109.46824 * 176.69304 * 6 5 4 34 34 H 1.09000 * 109.47196 * 56.69518 * 6 5 4 35 35 H 0.97005 * 119.99441 * 179.97438 * 14 13 11 36 36 H 1.09000 * 115.54524 * 328.97664 * 19 10 7 37 37 H 1.09002 * 117.50220 * 0.02562 * 20 19 10 38 38 H 1.09005 * 117.49546 * 145.02051 * 20 19 10 39 39 H 1.08995 * 117.49890 * 214.97752 * 21 19 10 40 40 H 1.08999 * 117.49669 * 359.97438 * 21 19 10 41 41 H 1.09001 * 110.51014 * 237.43324 * 22 5 4 42 42 H 1.09003 * 110.50944 * 0.13864 * 22 5 4 43 43 H 1.09002 * 110.37421 * 142.80967 * 23 22 5 44 44 H 1.08999 * 110.37488 * 265.03729 * 23 22 5 45 45 H 1.08997 * 110.37307 * 281.68038 * 25 24 23 46 46 H 1.09001 * 110.36811 * 159.34447 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.5372 -1.9753 0.9106 6 6 1.4345 -2.9151 0.4187 7 16 0.1897 -3.1210 1.7220 8 8 -0.5235 -1.9091 1.9263 9 8 0.7302 -3.8466 2.8177 10 7 -0.9302 -4.1489 1.0650 11 6 -0.8792 -5.4879 1.3471 12 1 -0.8014 -6.2064 0.5444 13 6 -0.9275 -5.9219 2.6648 14 7 -0.4766 -7.1174 2.9808 15 14 -1.6323 -4.8092 3.9894 16 1 -0.5428 -3.9909 4.5798 17 1 -2.6552 -3.9141 3.3913 18 1 -2.2592 -5.6381 5.0501 19 6 -1.9755 -3.6257 0.1819 20 6 -3.0260 -4.6126 -0.3312 21 6 -1.9537 -4.0731 -1.2810 22 6 3.6838 -1.8987 -0.1222 23 6 4.9145 -2.4336 0.6430 24 8 4.3660 -3.2639 1.6898 25 6 3.2107 -2.5474 2.1776 26 1 -0.3633 0.5316 -0.8794 27 1 -0.3633 -1.0276 -0.0207 28 1 -0.3634 0.4957 0.9001 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.8668 -3.8849 0.1726 34 1 0.9648 -2.4910 -0.4687 35 1 -0.5101 -7.4205 3.9017 36 1 -2.3019 -2.6071 0.3919 37 1 -2.9398 -5.6511 -0.0114 38 1 -4.0435 -4.2431 -0.4592 39 1 -2.2661 -3.3491 -2.0335 40 1 -1.1613 -4.7564 -1.5865 41 1 3.4651 -2.5303 -0.9832 42 1 3.8474 -0.8676 -0.4354 43 1 5.5454 -3.0260 -0.0198 44 1 5.4840 -1.6082 1.0702 45 1 3.5178 -1.7396 2.8418 46 1 2.5328 -3.2272 2.6937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595305296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:07 Heat of formation + Delta-G solvation = -111.457969 kcal Electronic energy + Delta-G solvation = -30328.103803 eV Core-core repulsion = 26347.279568 eV Total energy + Delta-G solvation = -3980.824236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.10380 -37.53567 -37.37633 -35.91373 -34.72551 -33.38622 -33.10435 -31.28943 -31.19928 -29.78432 -27.21722 -26.21847 -24.79840 -23.02131 -21.75787 -21.46874 -20.66214 -19.84410 -19.09080 -17.52923 -17.17353 -16.35970 -16.03802 -15.73464 -15.24922 -15.00952 -14.97152 -14.64447 -14.39680 -14.20502 -13.94659 -13.49762 -13.13060 -13.00521 -12.88104 -12.64810 -12.32080 -12.07784 -12.01441 -11.78269 -11.65477 -11.57454 -11.48398 -11.31208 -11.15907 -10.88221 -10.77201 -10.65229 -10.51682 -10.44092 -10.31248 -10.24675 -10.00260 -9.67266 -9.59112 -9.51680 -9.15599 -8.73485 -7.71763 -6.60273 -4.34356 1.39226 3.30046 3.44700 3.53210 3.54630 3.84503 4.07362 4.32947 4.46853 4.57238 4.63262 4.82673 4.84885 4.98401 5.02810 5.09438 5.17198 5.21254 5.30064 5.39550 5.54299 5.58973 5.60051 5.64028 5.67207 5.68884 5.75538 5.84690 5.88858 5.90601 5.97020 6.08368 6.13086 6.17046 6.23471 6.27731 6.31148 6.57234 6.69778 6.81800 6.86503 7.11635 7.38246 7.65611 8.08811 8.90776 9.02740 10.41269 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.006414 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.934389 B = 4364.213603 C = 5231.249887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 C -0.154 4.154 4 O -0.362 6.362 5 C 0.105 3.895 6 C -0.670 4.670 7 S 2.478 3.522 8 O -0.979 6.979 9 O -0.948 6.948 10 N -0.810 5.810 11 C -0.273 4.273 12 H 0.093 0.907 13 C 0.104 3.896 14 N -0.814 5.814 15 Si 0.851 3.149 16 H -0.236 1.236 17 H -0.257 1.257 18 H -0.283 1.283 19 C 0.083 3.917 20 C -0.162 4.162 21 C -0.210 4.210 22 C -0.176 4.176 23 C 0.043 3.957 24 O -0.357 6.357 25 C 0.020 3.980 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.284 0.716 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 10.386 -8.733 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 C -0.211 4.211 4 O -0.281 6.281 5 C 0.064 3.936 6 C -0.790 4.790 7 S 2.582 3.418 8 O -0.969 6.969 9 O -0.937 6.937 10 N -0.633 5.633 11 C -0.420 4.420 12 H 0.110 0.890 13 C -0.115 4.115 14 N -0.448 5.448 15 Si 0.675 3.325 16 H -0.160 1.160 17 H -0.180 1.180 18 H -0.210 1.210 19 C -0.026 4.026 20 C -0.201 4.201 21 C -0.249 4.249 22 C -0.215 4.215 23 C -0.034 4.034 24 O -0.275 6.275 25 C -0.057 4.057 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.980 10.787 -7.519 13.738 hybrid contribution 0.074 0.375 -0.454 0.594 sum 4.055 11.163 -7.973 14.304 Atomic orbital electron populations 1.22350 0.94197 1.03873 1.02074 1.22166 0.95030 0.92841 0.88068 1.21996 1.01103 0.95449 1.02565 1.88016 1.79928 1.27599 1.32598 1.22436 0.91935 0.83339 0.95925 1.31464 1.17471 1.06868 1.23184 1.12878 0.75130 0.74288 0.79489 1.93391 1.69197 1.48208 1.86088 1.93403 1.79191 1.71670 1.49469 1.52606 1.31622 1.18459 1.60593 1.18684 1.49685 0.80242 0.93385 0.88972 1.25794 0.92081 0.95193 0.98398 1.69783 1.35149 1.18983 1.20882 0.87193 0.80582 0.82252 0.82453 1.15977 1.18038 1.20998 1.21569 0.93965 0.97295 0.89778 1.23132 0.93331 1.01153 1.02471 1.23367 1.03107 1.04611 0.93854 1.23630 0.95608 1.02739 0.99501 1.23367 0.95413 0.94832 0.89765 1.89226 1.42399 1.43284 1.52595 1.24195 0.88949 0.98351 0.94209 0.92685 0.91259 0.90829 0.91926 0.92556 0.91483 0.91603 0.85070 0.86616 0.90625 0.86245 0.86882 0.89509 0.89575 0.88764 0.89738 0.89708 0.88946 0.92186 0.90769 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 8.10 37.16 0.30 -2.25 16 2 C 0.08 1.10 2.01 -26.73 -0.05 1.04 16 3 C -0.15 -1.76 9.56 37.16 0.36 -1.40 16 4 O -0.36 -6.36 8.98 -36.25 -0.33 -6.69 16 5 C 0.10 1.83 0.70 -89.05 -0.06 1.77 16 6 C -0.67 -12.52 4.49 37.16 0.17 -12.36 16 7 S 2.48 57.24 3.65 -107.50 -0.39 56.85 16 8 O -0.98 -23.20 13.38 -59.94 -0.80 -24.00 16 9 O -0.95 -25.06 9.88 -57.54 -0.57 -25.63 16 10 N -0.81 -18.51 2.28 -53.43 -0.12 -18.63 16 11 C -0.27 -6.90 7.91 -15.06 -0.12 -7.02 16 12 H 0.09 2.37 7.97 -52.48 -0.42 1.95 16 13 C 0.10 2.81 4.57 -17.43 -0.08 2.73 16 14 N -0.81 -22.48 13.97 55.49 0.78 -21.71 16 15 Si 0.85 22.00 25.49 -169.99 -4.33 17.67 16 16 H -0.24 -6.40 6.12 56.52 0.35 -6.06 16 17 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 C 0.08 1.59 6.32 -67.93 -0.43 1.16 16 20 C -0.16 -2.76 9.83 -26.69 -0.26 -3.02 16 21 C -0.21 -3.32 10.36 -26.69 -0.28 -3.59 16 22 C -0.18 -2.43 5.44 -25.17 -0.14 -2.56 16 23 C 0.04 0.59 7.63 37.93 0.29 0.88 16 24 O -0.36 -6.50 11.65 -35.23 -0.41 -6.91 16 25 C 0.02 0.37 6.73 37.93 0.26 0.63 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.17 4.66 -51.92 -0.24 0.92 16 28 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.06 0.81 6.05 -51.93 -0.31 0.50 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.13 2.46 8.14 -51.93 -0.42 2.03 16 34 H 0.12 1.91 6.14 -51.92 -0.32 1.59 16 35 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.21 7.48 -51.93 -0.39 1.83 16 37 H 0.11 2.11 7.01 -51.93 -0.36 1.75 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.08 7.73 -51.93 -0.40 0.68 16 42 H 0.08 1.00 6.97 -51.93 -0.36 0.64 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 46 H 0.14 3.03 4.54 -51.93 -0.24 2.79 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -30.34 357.71 -8.14 -38.48 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.30 Total: 9.17 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.65 Total: -40.34 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -2.11 Total: -63.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.33 Total: 17.67 kcal Atomic # 16 Polarization: 57.24 SS G_CDS: -0.39 Total: 56.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.34 -8.14 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.975 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds