Wall clock time and date at job start Tue Mar 31 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46760 * 2 1 4 4 O 1.42899 * 109.46984 * 119.99485 * 2 1 3 5 5 C 1.42903 * 114.00160 * 105.89565 * 4 2 1 6 6 C 1.53004 * 110.45516 * 294.53043 * 5 4 2 7 7 S 1.81404 * 109.46881 * 296.69340 * 6 5 4 8 8 O 1.42100 * 110.54212 * 68.37809 * 7 6 5 9 9 O 1.42097 * 110.54333 * 291.62334 * 7 6 5 10 10 N 1.65604 * 104.44636 * 180.02562 * 7 6 5 11 11 C 1.36934 * 119.99762 * 97.44944 * 10 7 6 12 12 H 1.08007 * 120.00091 * 236.94931 * 11 10 7 13 13 C 1.38814 * 120.00211 * 56.95097 * 11 10 7 14 14 N 1.31615 * 119.99880 * 200.95339 * 13 11 10 15 15 Si 1.86796 * 119.99840 * 20.94991 * 13 11 10 16 16 H 1.48498 * 109.47502 * 269.09420 * 15 13 11 17 17 H 1.48502 * 109.47092 * 29.09673 * 15 13 11 18 18 H 1.48503 * 109.47039 * 149.09346 * 15 13 11 19 19 C 1.46499 * 120.00134 * 277.45041 * 10 7 6 20 20 C 1.52997 * 117.49729 * 183.30750 * 19 10 7 21 21 C 1.52998 * 117.49975 * 114.64575 * 19 10 7 22 22 C 1.54504 * 110.51093 * 57.13323 * 5 4 2 23 23 C 1.54475 * 104.06502 * 118.78118 * 22 5 4 24 24 O 1.44433 * 104.80124 * 23.98012 * 23 22 5 25 25 C 1.44431 * 105.27266 * 319.48698 * 24 23 22 26 26 H 1.08994 * 109.46984 * 58.84835 * 1 2 3 27 27 H 1.09010 * 109.46745 * 178.84644 * 1 2 3 28 28 H 1.08996 * 109.47596 * 298.84071 * 1 2 3 29 29 H 1.08996 * 109.47357 * 239.99707 * 2 1 3 30 30 H 1.09000 * 109.47158 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46430 * 299.99119 * 3 2 1 32 32 H 1.08997 * 109.47772 * 59.99337 * 3 2 1 33 33 H 1.08993 * 109.46824 * 176.69304 * 6 5 4 34 34 H 1.09000 * 109.47196 * 56.69518 * 6 5 4 35 35 H 0.97005 * 119.99441 * 179.97438 * 14 13 11 36 36 H 1.09000 * 115.54524 * 328.97664 * 19 10 7 37 37 H 1.09002 * 117.50220 * 0.02562 * 20 19 10 38 38 H 1.09005 * 117.49546 * 145.02051 * 20 19 10 39 39 H 1.08995 * 117.49890 * 214.97752 * 21 19 10 40 40 H 1.08999 * 117.49669 * 359.97438 * 21 19 10 41 41 H 1.09001 * 110.51014 * 237.43324 * 22 5 4 42 42 H 1.09003 * 110.50944 * 0.13864 * 22 5 4 43 43 H 1.09002 * 110.37421 * 142.80967 * 23 22 5 44 44 H 1.08999 * 110.37488 * 265.03729 * 23 22 5 45 45 H 1.08997 * 110.37307 * 281.68038 * 25 24 23 46 46 H 1.09001 * 110.36811 * 159.34447 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.5372 -1.9753 0.9106 6 6 1.4345 -2.9151 0.4187 7 16 0.1897 -3.1210 1.7220 8 8 -0.5235 -1.9091 1.9263 9 8 0.7302 -3.8466 2.8177 10 7 -0.9302 -4.1489 1.0650 11 6 -0.8792 -5.4879 1.3471 12 1 -0.8014 -6.2064 0.5444 13 6 -0.9275 -5.9219 2.6648 14 7 -0.4766 -7.1174 2.9808 15 14 -1.6323 -4.8092 3.9894 16 1 -0.5428 -3.9909 4.5798 17 1 -2.6552 -3.9141 3.3913 18 1 -2.2592 -5.6381 5.0501 19 6 -1.9755 -3.6257 0.1819 20 6 -3.0260 -4.6126 -0.3312 21 6 -1.9537 -4.0731 -1.2810 22 6 3.6838 -1.8987 -0.1222 23 6 4.9145 -2.4336 0.6430 24 8 4.3660 -3.2639 1.6898 25 6 3.2107 -2.5474 2.1776 26 1 -0.3633 0.5316 -0.8794 27 1 -0.3633 -1.0276 -0.0207 28 1 -0.3634 0.4957 0.9001 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.8668 -3.8849 0.1726 34 1 0.9648 -2.4910 -0.4687 35 1 -0.5101 -7.4205 3.9017 36 1 -2.3019 -2.6071 0.3919 37 1 -2.9398 -5.6511 -0.0114 38 1 -4.0435 -4.2431 -0.4592 39 1 -2.2661 -3.3491 -2.0335 40 1 -1.1613 -4.7564 -1.5865 41 1 3.4651 -2.5303 -0.9832 42 1 3.8474 -0.8676 -0.4354 43 1 5.5454 -3.0260 -0.0198 44 1 5.4840 -1.6082 1.0702 45 1 3.5178 -1.7396 2.8418 46 1 2.5328 -3.2272 2.6937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595305296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:05 Heat of formation + Delta-G solvation = -133.094569 kcal Electronic energy + Delta-G solvation = -30329.042037 eV Core-core repulsion = 26347.279568 eV Total energy + Delta-G solvation = -3981.762469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.38787 -38.92450 -38.79855 -37.86618 -36.69250 -35.15906 -34.32725 -33.06497 -32.49693 -31.03652 -28.35540 -27.60209 -26.65396 -24.16197 -23.06712 -22.71137 -22.24805 -21.12567 -20.89783 -19.22472 -18.64889 -17.95026 -17.57641 -17.35752 -16.90136 -16.50582 -16.37135 -16.27436 -15.59619 -15.53685 -15.39315 -15.22547 -14.90768 -14.33485 -14.16770 -13.97553 -13.67096 -13.54032 -13.43632 -13.27463 -13.22500 -13.03981 -12.92351 -12.75605 -12.63489 -12.40388 -12.23786 -12.17621 -12.12403 -12.04969 -11.81142 -11.69050 -11.52612 -11.28284 -10.97047 -10.87333 -10.78365 -10.62304 -9.43395 -8.60876 -6.34201 -0.42987 1.20151 1.32866 1.41967 2.02880 2.28404 2.34255 2.81700 2.83981 2.98568 3.16722 3.27285 3.35706 3.49521 3.68787 3.95593 4.05985 4.12679 4.13520 4.17974 4.23774 4.28571 4.30642 4.30943 4.38779 4.52513 4.63948 4.70886 4.74244 4.76820 4.80233 4.83506 4.93341 4.94027 4.96816 4.99664 5.20509 5.31857 5.43171 5.50116 5.54975 5.59687 5.88424 6.09428 6.18134 6.95978 7.14163 8.46425 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.006414 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.934389 B = 4364.213603 C = 5231.249887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 C -0.150 4.150 4 O -0.382 6.382 5 C 0.100 3.900 6 C -0.645 4.645 7 S 2.506 3.494 8 O -0.986 6.986 9 O -0.985 6.985 10 N -0.828 5.828 11 C -0.284 4.284 12 H 0.081 0.919 13 C 0.075 3.925 14 N -0.863 5.863 15 Si 0.862 3.138 16 H -0.262 1.262 17 H -0.253 1.253 18 H -0.270 1.270 19 C 0.041 3.959 20 C -0.164 4.164 21 C -0.176 4.176 22 C -0.166 4.166 23 C 0.034 3.966 24 O -0.381 6.381 25 C 0.011 3.989 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.282 0.718 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 13.401 -12.387 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 C -0.207 4.207 4 O -0.303 6.303 5 C 0.058 3.942 6 C -0.772 4.772 7 S 2.612 3.388 8 O -0.976 6.976 9 O -0.975 6.975 10 N -0.653 5.653 11 C -0.425 4.425 12 H 0.099 0.901 13 C -0.137 4.137 14 N -0.499 5.499 15 Si 0.687 3.313 16 H -0.187 1.187 17 H -0.177 1.177 18 H -0.196 1.196 19 C -0.066 4.066 20 C -0.203 4.203 21 C -0.215 4.215 22 C -0.204 4.204 23 C -0.041 4.041 24 O -0.300 6.300 25 C -0.066 4.066 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.046 13.696 -11.132 18.356 hybrid contribution -0.161 -0.194 0.504 0.564 sum 4.885 13.501 -10.628 17.863 Atomic orbital electron populations 1.22396 0.95212 1.02731 1.02629 1.22533 0.94400 0.94564 0.87803 1.21998 1.01947 0.93384 1.03364 1.88032 1.80212 1.27243 1.34767 1.22446 0.92345 0.83039 0.96321 1.31146 1.16243 1.08471 1.21355 1.10079 0.75941 0.73645 0.79183 1.93419 1.70188 1.47609 1.86397 1.93414 1.80021 1.72480 1.51565 1.52510 1.33813 1.17199 1.61825 1.18381 1.50604 0.81166 0.92370 0.90110 1.26091 0.92907 0.95359 0.99370 1.69809 1.39225 1.20056 1.20828 0.87005 0.79733 0.81873 0.82738 1.18749 1.17683 1.19554 1.21888 0.94834 0.98035 0.91844 1.23175 0.94949 0.99503 1.02630 1.23425 1.01692 1.04075 0.92315 1.23623 0.93303 1.04966 0.98510 1.23739 0.95758 0.95536 0.89116 1.89200 1.42124 1.44575 1.54131 1.24063 0.89292 0.97834 0.95421 0.89179 0.93281 0.93215 0.89592 0.91249 0.88741 0.92819 0.84580 0.83354 0.90824 0.85770 0.89303 0.86555 0.85579 0.89326 0.88165 0.86837 0.86291 0.90242 0.89905 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.67 8.10 71.98 0.58 -4.09 16 2 C 0.06 1.55 2.01 30.60 0.06 1.61 16 3 C -0.15 -2.74 9.56 71.98 0.69 -2.06 16 4 O -0.38 -12.35 8.98 -148.01 -1.33 -13.68 16 5 C 0.10 3.22 0.70 -9.78 -0.01 3.21 16 6 C -0.65 -22.59 4.49 71.98 0.32 -22.26 16 7 S 2.51 116.03 3.65 -56.49 -0.21 115.82 16 8 O -0.99 -46.56 13.38 -125.35 -1.68 -48.23 16 9 O -0.99 -54.09 9.88 -127.65 -1.26 -55.35 16 10 N -0.83 -38.13 2.28 -322.94 -0.74 -38.87 16 11 C -0.28 -14.92 7.91 84.03 0.66 -14.26 16 12 H 0.08 4.35 7.97 -2.91 -0.02 4.33 16 13 C 0.08 4.29 4.57 84.86 0.39 4.68 16 14 N -0.86 -50.57 13.97 21.65 0.30 -50.27 16 15 Si 0.86 46.44 25.49 68.60 1.75 48.19 16 16 H -0.26 -15.08 6.12 99.48 0.61 -14.47 16 17 H -0.25 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.27 -13.65 7.11 99.48 0.71 -12.94 16 19 C 0.04 1.54 6.32 44.99 0.28 1.82 16 20 C -0.16 -5.38 9.83 30.62 0.30 -5.08 16 21 C -0.18 -5.04 10.36 30.62 0.32 -4.73 16 22 C -0.17 -3.73 5.44 31.61 0.17 -3.56 16 23 C 0.03 0.80 7.63 72.48 0.55 1.35 16 24 O -0.38 -13.31 11.65 -148.98 -1.74 -15.05 16 25 C 0.01 0.42 6.73 72.48 0.49 0.90 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.50 4.66 -2.38 -0.01 1.49 16 28 H 0.05 1.56 8.07 -2.39 -0.02 1.55 16 29 H 0.09 1.71 6.05 -2.39 -0.01 1.69 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 34 H 0.15 4.27 6.14 -2.39 -0.01 4.26 16 35 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 36 H 0.12 4.44 7.48 -2.39 -0.02 4.42 16 37 H 0.09 3.38 7.01 -2.39 -0.02 3.37 16 38 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.10 1.98 7.73 -2.39 -0.02 1.96 16 42 H 0.11 1.95 6.97 -2.39 -0.02 1.93 16 43 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 2.87 8.09 -2.39 -0.02 2.85 16 46 H 0.10 4.55 4.54 -2.39 -0.01 4.54 16 Total: -1.00 -71.47 357.71 0.80 -70.67 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.87 Total: 29.22 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 4.82 Total: -42.45 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -0.43 Total: -89.14 kcal Atomic # 8 Polarization: -126.31 SS G_CDS: -6.00 Total: -132.31 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.75 Total: 48.19 kcal Atomic # 16 Polarization: 116.03 SS G_CDS: -0.21 Total: 115.82 kcal Total: -71.47 0.80 -70.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.426 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds