Wall clock time and date at job start Tue Mar 31 2020 18:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49491 * 2 1 4 4 C 1.52760 * 109.59184 * 240.04717 * 2 1 3 5 5 N 1.46923 * 109.00996 * 185.53205 * 4 2 1 6 6 S 1.65594 * 120.63345 * 233.58457 * 5 4 2 7 7 O 1.42106 * 104.27725 * 153.64746 * 6 5 4 8 8 O 1.42099 * 104.27790 * 25.78930 * 6 5 4 9 9 C 1.81400 * 104.44941 * 269.71909 * 6 5 4 10 10 C 1.53000 * 109.47353 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47135 * 59.99639 * 10 9 6 12 12 C 1.53005 * 109.46791 * 300.00279 * 10 9 6 13 13 C 1.50694 * 109.47516 * 180.02562 * 10 9 6 14 14 H 1.08002 * 120.00122 * 5.40857 * 13 10 9 15 15 C 1.37880 * 120.00413 * 185.41306 * 13 10 9 16 16 N 1.31513 * 120.00156 * 150.62760 * 15 13 10 17 17 Si 1.86804 * 119.99409 * 330.89997 * 15 13 10 18 18 H 1.48497 * 109.46938 * 179.72782 * 17 15 13 19 19 H 1.48501 * 109.46927 * 299.72380 * 17 15 13 20 20 H 1.48495 * 109.47142 * 59.72761 * 17 15 13 21 21 C 1.46927 * 118.73533 * 53.30631 * 5 4 2 22 22 C 1.53184 * 108.78008 * 306.64533 * 21 5 4 23 23 C 1.53036 * 109.49962 * 120.06027 * 2 1 3 24 24 H 1.09005 * 109.44887 * 61.33671 * 23 2 1 25 25 C 1.50697 * 109.46209 * 301.37394 * 23 2 1 26 26 O 1.20825 * 119.99949 * 359.92817 * 25 23 2 27 27 O 1.34225 * 120.00054 * 179.97438 * 25 23 2 28 28 H 1.08995 * 109.47175 * 299.93314 * 1 2 3 29 29 H 1.09002 * 109.47736 * 59.93585 * 1 2 3 30 30 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.51203 * 65.65055 * 4 2 1 32 32 H 1.08995 * 109.43122 * 305.36838 * 4 2 1 33 33 H 1.09000 * 109.46976 * 60.00243 * 9 6 5 34 34 H 1.09004 * 109.47136 * 300.00168 * 9 6 5 35 35 H 1.08995 * 109.47189 * 172.49729 * 11 10 9 36 36 H 1.09002 * 109.47362 * 292.49600 * 11 10 9 37 37 H 1.08997 * 109.46590 * 52.50058 * 11 10 9 38 38 H 1.09002 * 109.46871 * 303.53246 * 12 10 9 39 39 H 1.08992 * 109.47447 * 63.53094 * 12 10 9 40 40 H 1.09000 * 109.47109 * 183.53433 * 12 10 9 41 41 H 0.96995 * 120.00065 * 355.23609 * 16 15 13 42 42 H 1.09010 * 109.58641 * 66.43409 * 21 5 4 43 43 H 1.09005 * 109.58967 * 186.85651 * 21 5 4 44 44 H 1.08999 * 109.50402 * 174.58387 * 22 21 5 45 45 H 1.09003 * 109.50125 * 294.65237 * 22 21 5 46 46 H 0.96704 * 117.00098 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5053 -0.8282 -1.1690 6 16 4.4594 -0.2829 -2.4077 7 8 5.6957 0.0357 -1.7836 8 8 3.6762 0.7218 -3.0373 9 6 4.6490 -1.7193 -3.4992 10 6 5.5223 -1.3385 -4.6964 11 6 6.8984 -0.8890 -4.2014 12 6 4.8595 -0.1955 -5.4680 13 6 5.6792 -2.5316 -5.6035 14 1 5.1340 -3.4412 -5.3986 15 6 6.5188 -2.4622 -6.6950 16 7 7.1134 -3.5486 -7.1373 17 14 6.8176 -0.8236 -7.5406 18 1 7.7570 -1.0158 -8.6745 19 1 5.5298 -0.2875 -8.0502 20 1 7.4033 0.1351 -6.5695 21 6 4.1059 -1.4253 0.0316 22 6 3.5709 -0.6938 1.2666 23 6 2.0408 -0.7226 1.2486 24 1 1.6972 -1.7570 1.2353 25 6 1.5111 -0.0334 2.4796 26 8 0.7994 0.9368 2.3697 27 8 1.8307 -0.4968 3.6981 28 1 -0.3633 0.5128 0.8905 29 1 -0.3635 0.5148 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7652 -0.1497 -2.1346 32 1 1.6033 -1.7149 -1.2973 33 1 3.6685 -2.0398 -3.8516 34 1 5.1215 -2.5335 -2.9496 35 1 7.5622 -0.7456 -5.0539 36 1 6.7996 0.0495 -3.6559 37 1 7.3137 -1.6508 -3.5416 38 1 3.8545 -0.4936 -5.7666 39 1 4.8026 0.6875 -4.8316 40 1 5.4493 0.0337 -6.3555 41 1 7.0167 -4.3849 -6.6555 42 1 3.8387 -2.4806 0.0876 43 1 5.1902 -1.3227 -0.0126 44 1 3.9334 -1.1882 2.1678 45 1 3.9158 0.3401 1.2550 46 1 1.4668 -0.0218 4.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600940274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:05 Heat of formation + Delta-G solvation = -158.724188 kcal Electronic energy + Delta-G solvation = -28733.672061 eV Core-core repulsion = 24750.798208 eV Total energy + Delta-G solvation = -3982.873853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00720 -38.58016 -36.82291 -36.65851 -36.49428 -35.49462 -33.58812 -32.34937 -32.03851 -27.47908 -27.35500 -26.36918 -25.72720 -24.55134 -22.55492 -22.37565 -20.27246 -19.68732 -18.49608 -18.37115 -17.71905 -17.04607 -16.83874 -16.20252 -15.85244 -15.66009 -14.91929 -14.82847 -14.44306 -14.22839 -14.04945 -13.72924 -13.38550 -13.22420 -12.88689 -12.83727 -12.55076 -12.40073 -12.27957 -12.24558 -12.05041 -11.77235 -11.59441 -11.51397 -11.48682 -11.20511 -11.13871 -11.06691 -10.97793 -10.75114 -10.54953 -10.38077 -10.19546 -9.95862 -9.93737 -9.13492 -9.04158 -8.88667 -8.18435 -6.59614 -4.16696 0.62120 1.87038 2.67751 2.89185 3.34158 3.39668 3.60387 4.15695 4.18474 4.31517 4.42002 4.48269 4.57623 4.77858 4.79733 5.01583 5.03907 5.07099 5.25007 5.30253 5.36334 5.39390 5.43626 5.49903 5.54872 5.58339 5.78615 5.80345 5.90791 6.00396 6.03931 6.07914 6.22401 6.31043 6.32775 6.43866 6.48690 6.53452 6.73315 6.86919 7.15728 7.33115 7.57564 7.99567 8.26455 8.77141 9.45639 10.75847 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029234 B = 0.003201 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.568263 B = 8744.157961 C = 8945.153408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.122 3.878 5 N -1.010 6.010 6 S 2.586 3.414 7 O -0.960 6.960 8 O -0.960 6.960 9 C -0.571 4.571 10 C 0.060 3.940 11 C -0.170 4.170 12 C -0.180 4.180 13 C -0.604 4.604 14 H 0.062 0.938 15 C 0.046 3.954 16 N -0.883 5.883 17 Si 1.038 2.962 18 H -0.295 1.295 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.118 3.882 22 C -0.123 4.123 23 C -0.074 4.074 24 H 0.112 0.888 25 C 0.483 3.517 26 O -0.508 6.508 27 O -0.516 6.516 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.272 0.728 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 3.237 19.182 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.108 4.108 3 H 0.104 0.896 4 C -0.003 4.003 5 N -0.846 5.846 6 S 2.686 3.314 7 O -0.950 6.950 8 O -0.950 6.950 9 C -0.704 4.704 10 C 0.057 3.943 11 C -0.228 4.228 12 C -0.237 4.237 13 C -0.642 4.642 14 H 0.080 0.920 15 C -0.162 4.162 16 N -0.514 5.514 17 Si 0.870 3.130 18 H -0.223 1.223 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.007 4.007 22 C -0.163 4.163 23 C -0.093 4.093 24 H 0.130 0.870 25 C 0.326 3.674 26 O -0.396 6.396 27 O -0.328 6.328 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.953 4.852 17.482 20.693 hybrid contribution -1.298 -1.152 1.706 2.434 sum -11.250 3.700 19.188 22.549 Atomic orbital electron populations 1.22090 0.93665 1.02086 1.04158 1.21282 0.96739 1.00480 0.92280 0.89622 1.21431 0.79065 1.00918 0.98890 1.58012 1.16016 1.78525 1.32036 1.05904 0.73487 0.77764 0.74270 1.93541 1.43700 1.83231 1.74567 1.93538 1.70024 1.55288 1.76199 1.30427 1.09656 1.17740 1.12587 1.18185 0.89756 0.96027 0.90359 1.22623 0.99381 0.99306 1.01469 1.22773 1.01581 0.98083 1.01223 1.21577 1.31554 0.97895 1.13169 0.91997 1.25682 0.91681 1.03497 0.95355 1.70861 1.35197 1.02011 1.43374 0.84379 0.76132 0.76022 0.76509 1.22318 1.21022 1.20005 1.21428 0.99283 0.96754 0.83250 1.21890 0.91984 1.02961 0.99421 1.21121 0.97625 1.01268 0.89281 0.86997 1.23567 0.77093 0.82079 0.84680 1.90662 1.35389 1.26589 1.86964 1.84548 1.71534 1.59804 1.16930 0.89885 0.91886 0.92852 0.87977 0.91112 0.86062 0.85952 0.91474 0.94400 0.92591 0.92018 0.93699 0.92932 0.91781 0.90938 0.87974 0.89231 0.90624 0.73290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.86 37.16 0.33 -1.17 16 2 C -0.09 -0.90 2.04 -90.73 -0.19 -1.08 16 3 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16 4 C 0.12 1.33 5.69 -3.93 -0.02 1.31 16 5 N -1.01 -12.74 3.23 -113.77 -0.37 -13.11 16 6 S 2.59 44.07 4.48 -107.50 -0.48 43.59 16 7 O -0.96 -18.29 14.37 -57.54 -0.83 -19.12 16 8 O -0.96 -18.36 14.28 -57.54 -0.82 -19.18 16 9 C -0.57 -10.44 5.11 37.16 0.19 -10.25 16 10 C 0.06 1.37 0.52 -155.66 -0.08 1.29 16 11 C -0.17 -3.87 7.38 37.16 0.27 -3.59 16 12 C -0.18 -4.02 7.33 37.16 0.27 -3.75 16 13 C -0.60 -16.12 8.42 -34.44 -0.29 -16.41 16 14 H 0.06 1.74 7.99 -52.49 -0.42 1.32 16 15 C 0.05 1.28 5.05 -17.82 -0.09 1.19 16 16 N -0.88 -26.04 13.70 55.43 0.76 -25.28 16 17 Si 1.04 25.21 23.47 -169.99 -3.99 21.22 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.50 6.72 56.52 0.38 -6.12 16 20 H -0.27 -6.18 5.78 56.52 0.33 -5.85 16 21 C 0.12 1.20 6.43 -3.71 -0.02 1.18 16 22 C -0.12 -1.10 5.30 -26.61 -0.14 -1.24 16 23 C -0.07 -0.64 2.14 -91.73 -0.20 -0.83 16 24 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 25 C 0.48 4.42 7.33 36.00 0.26 4.68 16 26 O -0.51 -6.01 14.33 -18.75 -0.27 -6.28 16 27 O -0.52 -3.43 13.30 -39.25 -0.52 -3.95 16 28 H 0.08 0.87 5.40 -51.93 -0.28 0.59 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 1.20 6.85 -51.93 -0.36 0.84 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 35 H 0.07 1.58 4.46 -51.93 -0.23 1.34 16 36 H 0.04 0.80 6.02 -51.93 -0.31 0.49 16 37 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.94 5.72 -51.93 -0.30 0.64 16 40 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 41 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 42 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.10 1.11 6.86 -51.93 -0.36 0.75 16 44 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.41 1.10 9.10 45.56 0.41 1.51 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -34.15 353.42 -7.17 -41.32 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.28 Total: 4.14 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 0.30 Total: -28.68 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.39 Total: -38.38 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -2.44 Total: -48.53 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -3.99 Total: 21.22 kcal Atomic # 16 Polarization: 44.07 SS G_CDS: -0.48 Total: 43.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.15 -7.17 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600940274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.404 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds