Wall clock time and date at job start Tue Mar 31 2020 18:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49491 * 2 1 4 4 C 1.52760 * 109.59184 * 240.04717 * 2 1 3 5 5 N 1.46923 * 109.00996 * 185.53205 * 4 2 1 6 6 S 1.65594 * 120.63345 * 233.58457 * 5 4 2 7 7 O 1.42106 * 104.27725 * 153.64746 * 6 5 4 8 8 O 1.42099 * 104.27790 * 25.78930 * 6 5 4 9 9 C 1.81400 * 104.44941 * 269.71909 * 6 5 4 10 10 C 1.53000 * 109.47353 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47135 * 59.99639 * 10 9 6 12 12 C 1.53005 * 109.46791 * 300.00279 * 10 9 6 13 13 C 1.50694 * 109.47516 * 180.02562 * 10 9 6 14 14 H 1.08002 * 120.00122 * 5.40857 * 13 10 9 15 15 C 1.37880 * 120.00413 * 185.41306 * 13 10 9 16 16 N 1.31513 * 120.00156 * 150.62760 * 15 13 10 17 17 Si 1.86804 * 119.99409 * 330.89997 * 15 13 10 18 18 H 1.48497 * 109.46938 * 179.72782 * 17 15 13 19 19 H 1.48501 * 109.46927 * 299.72380 * 17 15 13 20 20 H 1.48495 * 109.47142 * 59.72761 * 17 15 13 21 21 C 1.46927 * 118.73533 * 53.30631 * 5 4 2 22 22 C 1.53184 * 108.78008 * 306.64533 * 21 5 4 23 23 C 1.53036 * 109.49962 * 120.06027 * 2 1 3 24 24 H 1.09005 * 109.44887 * 61.33671 * 23 2 1 25 25 C 1.50697 * 109.46209 * 301.37394 * 23 2 1 26 26 O 1.20825 * 119.99949 * 359.92817 * 25 23 2 27 27 O 1.34225 * 120.00054 * 179.97438 * 25 23 2 28 28 H 1.08995 * 109.47175 * 299.93314 * 1 2 3 29 29 H 1.09002 * 109.47736 * 59.93585 * 1 2 3 30 30 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.51203 * 65.65055 * 4 2 1 32 32 H 1.08995 * 109.43122 * 305.36838 * 4 2 1 33 33 H 1.09000 * 109.46976 * 60.00243 * 9 6 5 34 34 H 1.09004 * 109.47136 * 300.00168 * 9 6 5 35 35 H 1.08995 * 109.47189 * 172.49729 * 11 10 9 36 36 H 1.09002 * 109.47362 * 292.49600 * 11 10 9 37 37 H 1.08997 * 109.46590 * 52.50058 * 11 10 9 38 38 H 1.09002 * 109.46871 * 303.53246 * 12 10 9 39 39 H 1.08992 * 109.47447 * 63.53094 * 12 10 9 40 40 H 1.09000 * 109.47109 * 183.53433 * 12 10 9 41 41 H 0.96995 * 120.00065 * 355.23609 * 16 15 13 42 42 H 1.09010 * 109.58641 * 66.43409 * 21 5 4 43 43 H 1.09005 * 109.58967 * 186.85651 * 21 5 4 44 44 H 1.08999 * 109.50402 * 174.58387 * 22 21 5 45 45 H 1.09003 * 109.50125 * 294.65237 * 22 21 5 46 46 H 0.96704 * 117.00098 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5053 -0.8282 -1.1690 6 16 4.4594 -0.2829 -2.4077 7 8 5.6957 0.0357 -1.7836 8 8 3.6762 0.7218 -3.0373 9 6 4.6490 -1.7193 -3.4992 10 6 5.5223 -1.3385 -4.6964 11 6 6.8984 -0.8890 -4.2014 12 6 4.8595 -0.1955 -5.4680 13 6 5.6792 -2.5316 -5.6035 14 1 5.1340 -3.4412 -5.3986 15 6 6.5188 -2.4622 -6.6950 16 7 7.1134 -3.5486 -7.1373 17 14 6.8176 -0.8236 -7.5406 18 1 7.7570 -1.0158 -8.6745 19 1 5.5298 -0.2875 -8.0502 20 1 7.4033 0.1351 -6.5695 21 6 4.1059 -1.4253 0.0316 22 6 3.5709 -0.6938 1.2666 23 6 2.0408 -0.7226 1.2486 24 1 1.6972 -1.7570 1.2353 25 6 1.5111 -0.0334 2.4796 26 8 0.7994 0.9368 2.3697 27 8 1.8307 -0.4968 3.6981 28 1 -0.3633 0.5128 0.8905 29 1 -0.3635 0.5148 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7652 -0.1497 -2.1346 32 1 1.6033 -1.7149 -1.2973 33 1 3.6685 -2.0398 -3.8516 34 1 5.1215 -2.5335 -2.9496 35 1 7.5622 -0.7456 -5.0539 36 1 6.7996 0.0495 -3.6559 37 1 7.3137 -1.6508 -3.5416 38 1 3.8545 -0.4936 -5.7666 39 1 4.8026 0.6875 -4.8316 40 1 5.4493 0.0337 -6.3555 41 1 7.0167 -4.3849 -6.6555 42 1 3.8387 -2.4806 0.0876 43 1 5.1902 -1.3227 -0.0126 44 1 3.9334 -1.1882 2.1678 45 1 3.9158 0.3401 1.2550 46 1 1.4668 -0.0218 4.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600940274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:04 Heat of formation + Delta-G solvation = -184.454375 kcal Electronic energy + Delta-G solvation = -28734.787806 eV Core-core repulsion = 24750.798208 eV Total energy + Delta-G solvation = -3983.989597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70042 -39.36153 -38.42786 -38.23564 -37.15123 -36.93608 -34.45342 -34.11279 -33.11096 -28.93855 -28.17482 -28.14225 -26.67759 -26.51557 -23.31352 -23.11414 -21.51406 -21.04207 -19.70644 -19.12938 -18.98834 -18.69694 -17.76014 -17.26006 -17.09996 -16.68404 -16.54735 -15.90085 -15.32857 -15.16507 -15.08356 -14.90787 -14.81518 -14.70250 -14.32789 -14.16700 -13.97042 -13.63183 -13.46939 -13.28201 -13.15627 -13.02967 -12.87975 -12.86264 -12.62829 -12.46750 -12.33577 -12.29732 -12.01344 -11.93614 -11.81964 -11.78034 -11.61515 -11.47904 -11.15190 -11.00314 -10.79797 -10.29994 -9.97254 -8.75727 -6.33058 -0.71983 1.20228 1.42037 1.44857 1.67920 1.70823 2.12588 2.43004 2.82376 2.93792 3.15553 3.44673 3.61514 3.73590 3.86520 3.94478 4.04041 4.07795 4.27108 4.32415 4.39745 4.51833 4.54853 4.59580 4.64112 4.67265 4.69645 4.70879 4.75552 4.80969 4.83501 4.95676 5.03696 5.10693 5.12971 5.17504 5.31410 5.35245 5.40398 5.54405 5.62948 5.74743 6.00102 6.08303 6.58818 7.02617 7.35073 8.58240 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029234 B = 0.003201 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.568263 B = 8744.157961 C = 8945.153408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.087 4.087 3 H 0.057 0.943 4 C 0.116 3.884 5 N -1.003 6.003 6 S 2.608 3.392 7 O -0.982 6.982 8 O -0.983 6.983 9 C -0.579 4.579 10 C 0.048 3.952 11 C -0.173 4.173 12 C -0.185 4.185 13 C -0.600 4.600 14 H 0.038 0.962 15 C 0.002 3.998 16 N -0.919 5.919 17 Si 1.060 2.940 18 H -0.302 1.302 19 H -0.263 1.263 20 H -0.249 1.249 21 C 0.108 3.892 22 C -0.119 4.119 23 C -0.073 4.073 24 H 0.142 0.858 25 C 0.488 3.512 26 O -0.542 6.542 27 O -0.509 6.509 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.262 0.738 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.055 0.945 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 3.217 21.161 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.009 4.009 5 N -0.841 5.841 6 S 2.706 3.294 7 O -0.972 6.972 8 O -0.973 6.973 9 C -0.711 4.711 10 C 0.045 3.955 11 C -0.231 4.231 12 C -0.242 4.242 13 C -0.638 4.638 14 H 0.056 0.944 15 C -0.200 4.200 16 N -0.552 5.552 17 Si 0.887 3.113 18 H -0.231 1.231 19 H -0.189 1.189 20 H -0.175 1.175 21 C -0.016 4.016 22 C -0.158 4.158 23 C -0.092 4.092 24 H 0.159 0.841 25 C 0.332 3.668 26 O -0.432 6.432 27 O -0.323 6.323 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.133 0.867 45 H 0.074 0.926 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -11.190 4.827 19.481 22.979 hybrid contribution -0.985 -1.200 1.256 1.997 sum -12.175 3.627 20.736 24.318 Atomic orbital electron populations 1.22037 0.92851 1.03262 1.03403 1.21215 0.97353 0.99133 0.93001 0.92427 1.21674 0.77765 1.02738 0.98730 1.57677 1.16521 1.78545 1.31366 1.04957 0.73169 0.76928 0.74354 1.93509 1.45398 1.83450 1.74878 1.93505 1.70410 1.56083 1.77297 1.30426 1.09626 1.19352 1.11675 1.18164 0.91008 0.94704 0.91605 1.22621 0.99091 1.00148 1.01193 1.22798 1.01868 0.98371 1.01181 1.21772 1.30105 0.98443 1.13460 0.94374 1.26711 0.91806 1.05187 0.96320 1.70959 1.37610 1.02320 1.44357 0.84116 0.77056 0.73915 0.76229 1.23076 1.18908 1.17471 1.21764 0.98874 0.98656 0.82342 1.21872 0.92160 1.01979 0.99830 1.21140 0.97274 1.02468 0.88308 0.84072 1.23605 0.76349 0.81402 0.85451 1.90666 1.37031 1.28033 1.87499 1.84498 1.71183 1.59701 1.16879 0.91127 0.92185 0.90667 0.89180 0.87752 0.84610 0.84807 0.92684 0.93067 0.92325 0.91198 0.92419 0.93493 0.92897 0.87510 0.88854 0.86716 0.92593 0.71218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.86 71.98 0.64 -1.96 16 2 C -0.09 -1.61 2.04 -10.86 -0.02 -1.63 16 3 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 4 C 0.12 2.21 5.69 86.22 0.49 2.70 16 5 N -1.00 -22.85 3.23 -513.84 -1.66 -24.51 16 6 S 2.61 84.51 4.48 -56.49 -0.25 84.26 16 7 O -0.98 -36.08 14.37 -127.65 -1.83 -37.92 16 8 O -0.98 -36.27 14.28 -127.65 -1.82 -38.09 16 9 C -0.58 -20.23 5.11 71.98 0.37 -19.87 16 10 C 0.05 2.15 0.52 -52.93 -0.03 2.12 16 11 C -0.17 -7.68 7.38 71.98 0.53 -7.15 16 12 C -0.19 -7.99 7.33 71.98 0.53 -7.46 16 13 C -0.60 -32.07 8.42 25.60 0.22 -31.85 16 14 H 0.04 2.17 7.99 -2.91 -0.02 2.15 16 15 C 0.00 0.12 5.05 84.66 0.43 0.55 16 16 N -0.92 -55.38 13.70 21.45 0.29 -55.08 16 17 Si 1.06 50.22 23.47 68.60 1.61 51.83 16 18 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 19 H -0.26 -11.51 6.72 99.48 0.67 -10.84 16 20 H -0.25 -10.78 5.78 99.48 0.57 -10.20 16 21 C 0.11 1.85 6.43 86.36 0.56 2.41 16 22 C -0.12 -1.78 5.30 30.67 0.16 -1.61 16 23 C -0.07 -1.04 2.14 -11.51 -0.02 -1.06 16 24 H 0.14 1.22 8.14 -2.38 -0.02 1.20 16 25 C 0.49 7.78 7.33 71.24 0.52 8.30 16 26 O -0.54 -12.20 14.33 21.97 0.31 -11.88 16 27 O -0.51 -5.21 13.30 -51.37 -0.68 -5.89 16 28 H 0.07 1.39 5.40 -2.39 -0.01 1.38 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.96 6.85 -2.38 -0.02 1.95 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 35 H 0.05 2.53 4.46 -2.39 -0.01 2.52 16 36 H 0.05 2.10 6.02 -2.39 -0.01 2.09 16 37 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 38 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.06 2.32 5.72 -2.39 -0.01 2.31 16 40 H 0.05 2.06 2.28 -2.39 -0.01 2.05 16 41 H 0.26 15.71 8.73 -92.71 -0.81 14.90 16 42 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.09 1.81 6.86 -2.38 -0.02 1.79 16 44 H 0.11 1.16 8.08 -2.39 -0.02 1.14 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.43 1.12 9.10 -74.05 -0.67 0.45 16 Total: -1.00 -74.77 353.42 0.45 -74.32 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.12 Total: 19.48 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 4.36 Total: -56.52 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -1.36 Total: -79.59 kcal Atomic # 8 Polarization: -89.76 SS G_CDS: -4.02 Total: -93.78 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.61 Total: 51.83 kcal Atomic # 16 Polarization: 84.51 SS G_CDS: -0.25 Total: 84.26 kcal Total: -74.77 0.45 -74.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600940274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.132 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds