Wall clock time and date at job start Tue Mar 31 2020 18:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.50113 * 2 1 4 4 C 1.53196 * 109.49486 * 239.93725 * 2 1 3 5 5 N 1.46929 * 108.77486 * 294.67884 * 4 2 1 6 6 S 1.65600 * 120.62795 * 126.37070 * 5 4 2 7 7 O 1.42098 * 104.27553 * 206.07528 * 6 5 4 8 8 O 1.42098 * 104.27821 * 333.92985 * 6 5 4 9 9 C 1.81394 * 104.44940 * 90.00143 * 6 5 4 10 10 C 1.53001 * 109.47062 * 179.97438 * 9 6 5 11 11 C 1.52992 * 109.47167 * 300.00191 * 10 9 6 12 12 C 1.53006 * 109.47105 * 60.00452 * 10 9 6 13 13 C 1.50705 * 109.47104 * 179.97438 * 10 9 6 14 14 H 1.07999 * 120.00034 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00019 * 180.02562 * 13 10 9 16 16 N 1.31521 * 119.99780 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00148 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46885 * 89.99958 * 17 15 13 19 19 H 1.48494 * 109.47157 * 210.00029 * 17 15 13 20 20 H 1.48500 * 109.46869 * 330.00418 * 17 15 13 21 21 C 1.46918 * 118.73922 * 306.39780 * 5 4 2 22 22 C 1.53194 * 108.78089 * 53.60697 * 21 5 4 23 23 C 1.53037 * 109.50003 * 120.09872 * 2 1 3 24 24 H 1.09004 * 109.46115 * 178.60816 * 23 2 1 25 25 C 1.50698 * 109.45804 * 298.57701 * 23 2 1 26 26 O 1.20825 * 120.00288 * 359.97438 * 25 23 2 27 27 O 1.34234 * 119.99644 * 180.02562 * 25 23 2 28 28 H 1.08997 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46771 * 300.06203 * 1 2 3 30 30 H 1.08998 * 109.47291 * 60.05902 * 1 2 3 31 31 H 1.08998 * 109.58804 * 54.47322 * 4 2 1 32 32 H 1.09003 * 109.58394 * 174.89898 * 4 2 1 33 33 H 1.09000 * 109.47427 * 300.00046 * 9 6 5 34 34 H 1.09003 * 109.47250 * 60.00330 * 9 6 5 35 35 H 1.08994 * 109.47718 * 60.00036 * 11 10 9 36 36 H 1.09005 * 109.47309 * 179.97438 * 11 10 9 37 37 H 1.09003 * 109.47313 * 299.99572 * 11 10 9 38 38 H 1.08999 * 109.47212 * 59.99348 * 12 10 9 39 39 H 1.08998 * 109.47235 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46855 * 299.99915 * 12 10 9 41 41 H 0.97005 * 119.99614 * 180.02562 * 16 15 13 42 42 H 1.09008 * 109.58859 * 293.81127 * 21 5 4 43 43 H 1.09002 * 109.58786 * 173.39329 * 21 5 4 44 44 H 1.09003 * 109.49900 * 185.41596 * 22 21 5 45 45 H 1.08990 * 109.49871 * 65.31214 * 22 21 5 46 46 H 0.96707 * 116.99974 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 1.6515 -2.1379 -1.1702 6 16 0.8189 -2.8546 -2.4093 7 8 0.1065 -3.9143 -1.7859 8 8 0.1327 -1.7807 -3.0379 9 6 2.1097 -3.5114 -3.5016 10 6 1.4592 -4.2068 -4.6992 11 6 0.5767 -5.3546 -4.2049 12 6 0.6025 -3.2002 -5.4699 13 6 2.5316 -4.7518 -5.6070 14 1 3.5729 -4.6162 -5.3547 15 6 2.1833 -5.4236 -6.7595 16 7 0.9151 -5.5883 -7.0669 17 14 3.5124 -6.0999 -7.8844 18 1 3.8497 -7.4867 -7.4740 19 1 3.0203 -6.1041 -9.2854 20 1 4.7240 -5.2466 -7.7877 21 6 2.0139 -2.9040 0.0299 22 6 1.5029 -2.1561 1.2654 23 6 2.0408 -0.7234 1.2481 24 1 3.1306 -0.7447 1.2350 25 6 1.5677 0.0050 2.4795 26 8 0.8919 1.0006 2.3703 27 8 1.8979 -0.4517 3.6978 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8895 30 1 -0.3634 0.5129 -0.8905 31 1 1.6006 -0.2724 -2.1390 32 1 3.1274 -0.6459 -1.2983 33 1 2.7387 -2.6936 -3.8534 34 1 2.7198 -4.2288 -2.9527 35 1 -0.1989 -4.9601 -3.5486 36 1 0.1129 -5.8498 -5.0580 37 1 1.1870 -6.0717 -3.6559 38 1 1.2312 -2.3824 -5.8220 39 1 0.1387 -3.6957 -6.3228 40 1 -0.1731 -2.8055 -4.8135 41 1 0.6701 -6.0613 -7.8776 42 1 3.0979 -3.0044 0.0858 43 1 1.5553 -3.8918 -0.0149 44 1 1.8481 -2.6635 2.1663 45 1 0.4133 -2.1358 1.2535 46 1 1.5709 0.0489 4.4579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600940275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:08 Heat of formation + Delta-G solvation = -167.618637 kcal Electronic energy + Delta-G solvation = -28879.032456 eV Core-core repulsion = 24895.772911 eV Total energy + Delta-G solvation = -3983.259545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98420 -38.64114 -36.64914 -36.41452 -36.28215 -35.30261 -33.25739 -31.96625 -31.67539 -27.57932 -26.71164 -25.73471 -25.56140 -25.23371 -23.19368 -22.17000 -19.67136 -19.34454 -18.33381 -18.30703 -17.58889 -16.70986 -16.06212 -15.90200 -15.75229 -15.52603 -14.94908 -14.71741 -14.52339 -14.26165 -13.77907 -13.67968 -13.11034 -13.04260 -13.01084 -12.52658 -12.34839 -12.21043 -12.06429 -11.90063 -11.67291 -11.51501 -11.33814 -11.18209 -11.10176 -11.07652 -10.94492 -10.79371 -10.73006 -10.64840 -10.38983 -10.33455 -10.28197 -10.11445 -9.67128 -9.58861 -8.96643 -8.64010 -8.41800 -6.05037 -4.17235 0.79638 1.93325 2.74083 3.06540 3.24491 3.31944 3.33791 4.26756 4.31035 4.36502 4.43637 4.60928 4.68538 4.89359 4.92060 5.06885 5.10089 5.20174 5.38996 5.44838 5.48844 5.51521 5.63298 5.65613 5.70947 5.75048 5.90791 5.94970 6.01864 6.18602 6.23146 6.36220 6.44554 6.66131 6.68620 6.77872 6.88818 7.02454 7.29576 7.48537 7.62987 7.66166 7.96321 8.07912 8.31271 8.81339 9.48343 10.96227 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029819 B = 0.003103 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.772103 B = 9021.654246 C = 9175.514897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.085 4.085 3 H 0.089 0.911 4 C 0.122 3.878 5 N -1.009 6.009 6 S 2.591 3.409 7 O -0.962 6.962 8 O -0.958 6.958 9 C -0.582 4.582 10 C 0.082 3.918 11 C -0.163 4.163 12 C -0.163 4.163 13 C -0.503 4.503 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.120 3.880 22 C -0.126 4.126 23 C -0.073 4.073 24 H 0.111 0.889 25 C 0.483 3.517 26 O -0.509 6.509 27 O -0.517 6.517 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 8.846 17.816 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.105 4.105 3 H 0.107 0.893 4 C -0.003 4.003 5 N -0.845 5.845 6 S 2.691 3.309 7 O -0.952 6.952 8 O -0.949 6.949 9 C -0.715 4.715 10 C 0.079 3.921 11 C -0.221 4.221 12 C -0.221 4.221 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.522 5.522 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.006 4.006 22 C -0.165 4.165 23 C -0.092 4.092 24 H 0.129 0.871 25 C 0.325 3.675 26 O -0.397 6.397 27 O -0.329 6.329 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.078 8.804 17.252 19.611 hybrid contribution 1.297 -0.103 -0.194 1.316 sum 4.375 8.702 17.058 19.643 Atomic orbital electron populations 1.22082 0.93954 1.02370 1.03408 1.21316 0.97823 0.99118 0.92273 0.89298 1.21492 0.99778 0.80209 0.98863 1.58038 1.75865 1.18556 1.32054 1.05780 0.76840 0.74253 0.74061 1.93526 1.69904 1.57054 1.74730 1.93533 1.70935 1.54344 1.76062 1.30580 1.16354 1.11073 1.13542 1.17933 0.94064 0.91756 0.88315 1.22271 0.98558 0.99910 1.01368 1.22272 0.98628 0.98106 1.03097 1.20948 0.91933 1.35649 1.05686 0.92315 1.24943 0.95506 0.95763 0.97539 1.69807 1.15350 1.41644 1.25352 0.86533 0.81802 0.79329 0.79962 1.20636 1.21118 1.19948 1.21392 1.00345 0.95511 0.83352 1.21935 1.02473 0.92723 0.99351 1.21085 1.02677 0.96217 0.89267 0.87087 1.23600 0.76530 0.82682 0.84681 1.90683 1.35979 1.25928 1.87062 1.84553 1.72976 1.58408 1.16945 0.92671 0.90835 0.91756 0.87958 0.91220 0.86452 0.86480 0.95387 0.88669 0.94501 0.94485 0.88666 0.95370 0.92728 0.91083 0.88069 0.89481 0.90267 0.73369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.40 37.16 0.31 -1.74 16 2 C -0.09 -0.89 2.36 -90.50 -0.21 -1.11 16 3 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 4 C 0.12 1.36 5.83 -3.71 -0.02 1.34 16 5 N -1.01 -13.18 2.66 -113.52 -0.30 -13.48 16 6 S 2.59 46.44 4.49 -107.50 -0.48 45.96 16 7 O -0.96 -19.39 14.21 -57.54 -0.82 -20.20 16 8 O -0.96 -19.32 14.21 -57.54 -0.82 -20.14 16 9 C -0.58 -11.05 5.12 37.16 0.19 -10.86 16 10 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 11 C -0.16 -3.98 7.78 37.15 0.29 -3.69 16 12 C -0.16 -3.98 7.77 37.16 0.29 -3.69 16 13 C -0.50 -13.07 8.01 -34.44 -0.28 -13.35 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 16 N -0.88 -23.97 9.35 55.43 0.52 -23.45 16 17 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.12 1.26 6.43 -3.71 -0.02 1.24 16 22 C -0.13 -1.17 4.96 -26.61 -0.13 -1.30 16 23 C -0.07 -0.65 2.37 -91.73 -0.22 -0.87 16 24 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 25 C 0.48 4.57 7.34 36.00 0.26 4.83 16 26 O -0.51 -6.22 14.51 -18.75 -0.27 -6.50 16 27 O -0.52 -3.60 13.30 -39.27 -0.52 -4.12 16 28 H 0.05 0.76 5.97 -51.93 -0.31 0.45 16 29 H 0.07 0.95 5.65 -51.93 -0.29 0.65 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.25 6.86 -51.93 -0.36 0.89 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 35 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 36 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 40 H 0.03 0.65 5.47 -51.93 -0.28 0.37 16 41 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.10 1.16 6.86 -51.93 -0.36 0.80 16 44 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 45 H 0.08 0.86 6.33 -51.93 -0.33 0.53 16 46 H 0.41 1.23 9.10 45.56 0.41 1.65 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -33.07 356.78 -8.24 -41.31 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.19 Total: 5.53 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 0.29 Total: -25.72 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.22 Total: -36.93 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -2.43 Total: -50.96 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 46.44 SS G_CDS: -0.48 Total: 45.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.07 -8.24 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600940275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.304 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds