Wall clock time and date at job start Tue Mar 31 2020 18:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.50113 * 2 1 4 4 C 1.53196 * 109.49486 * 239.93725 * 2 1 3 5 5 N 1.46929 * 108.77486 * 294.67884 * 4 2 1 6 6 S 1.65600 * 120.62795 * 126.37070 * 5 4 2 7 7 O 1.42098 * 104.27553 * 206.07528 * 6 5 4 8 8 O 1.42098 * 104.27821 * 333.92985 * 6 5 4 9 9 C 1.81394 * 104.44940 * 90.00143 * 6 5 4 10 10 C 1.53001 * 109.47062 * 179.97438 * 9 6 5 11 11 C 1.52992 * 109.47167 * 300.00191 * 10 9 6 12 12 C 1.53006 * 109.47105 * 60.00452 * 10 9 6 13 13 C 1.50705 * 109.47104 * 179.97438 * 10 9 6 14 14 H 1.07999 * 120.00034 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00019 * 180.02562 * 13 10 9 16 16 N 1.31521 * 119.99780 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00148 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46885 * 89.99958 * 17 15 13 19 19 H 1.48494 * 109.47157 * 210.00029 * 17 15 13 20 20 H 1.48500 * 109.46869 * 330.00418 * 17 15 13 21 21 C 1.46918 * 118.73922 * 306.39780 * 5 4 2 22 22 C 1.53194 * 108.78089 * 53.60697 * 21 5 4 23 23 C 1.53037 * 109.50003 * 120.09872 * 2 1 3 24 24 H 1.09004 * 109.46115 * 178.60816 * 23 2 1 25 25 C 1.50698 * 109.45804 * 298.57701 * 23 2 1 26 26 O 1.20825 * 120.00288 * 359.97438 * 25 23 2 27 27 O 1.34234 * 119.99644 * 180.02562 * 25 23 2 28 28 H 1.08997 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46771 * 300.06203 * 1 2 3 30 30 H 1.08998 * 109.47291 * 60.05902 * 1 2 3 31 31 H 1.08998 * 109.58804 * 54.47322 * 4 2 1 32 32 H 1.09003 * 109.58394 * 174.89898 * 4 2 1 33 33 H 1.09000 * 109.47427 * 300.00046 * 9 6 5 34 34 H 1.09003 * 109.47250 * 60.00330 * 9 6 5 35 35 H 1.08994 * 109.47718 * 60.00036 * 11 10 9 36 36 H 1.09005 * 109.47309 * 179.97438 * 11 10 9 37 37 H 1.09003 * 109.47313 * 299.99572 * 11 10 9 38 38 H 1.08999 * 109.47212 * 59.99348 * 12 10 9 39 39 H 1.08998 * 109.47235 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46855 * 299.99915 * 12 10 9 41 41 H 0.97005 * 119.99614 * 180.02562 * 16 15 13 42 42 H 1.09008 * 109.58859 * 293.81127 * 21 5 4 43 43 H 1.09002 * 109.58786 * 173.39329 * 21 5 4 44 44 H 1.09003 * 109.49900 * 185.41596 * 22 21 5 45 45 H 1.08990 * 109.49871 * 65.31214 * 22 21 5 46 46 H 0.96707 * 116.99974 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 1.6515 -2.1379 -1.1702 6 16 0.8189 -2.8546 -2.4093 7 8 0.1065 -3.9143 -1.7859 8 8 0.1327 -1.7807 -3.0379 9 6 2.1097 -3.5114 -3.5016 10 6 1.4592 -4.2068 -4.6992 11 6 0.5767 -5.3546 -4.2049 12 6 0.6025 -3.2002 -5.4699 13 6 2.5316 -4.7518 -5.6070 14 1 3.5729 -4.6162 -5.3547 15 6 2.1833 -5.4236 -6.7595 16 7 0.9151 -5.5883 -7.0669 17 14 3.5124 -6.0999 -7.8844 18 1 3.8497 -7.4867 -7.4740 19 1 3.0203 -6.1041 -9.2854 20 1 4.7240 -5.2466 -7.7877 21 6 2.0139 -2.9040 0.0299 22 6 1.5029 -2.1561 1.2654 23 6 2.0408 -0.7234 1.2481 24 1 3.1306 -0.7447 1.2350 25 6 1.5677 0.0050 2.4795 26 8 0.8919 1.0006 2.3703 27 8 1.8979 -0.4517 3.6978 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8895 30 1 -0.3634 0.5129 -0.8905 31 1 1.6006 -0.2724 -2.1390 32 1 3.1274 -0.6459 -1.2983 33 1 2.7387 -2.6936 -3.8534 34 1 2.7198 -4.2288 -2.9527 35 1 -0.1989 -4.9601 -3.5486 36 1 0.1129 -5.8498 -5.0580 37 1 1.1870 -6.0717 -3.6559 38 1 1.2312 -2.3824 -5.8220 39 1 0.1387 -3.6957 -6.3228 40 1 -0.1731 -2.8055 -4.8135 41 1 0.6701 -6.0613 -7.8776 42 1 3.0979 -3.0044 0.0858 43 1 1.5553 -3.8918 -0.0149 44 1 1.8481 -2.6635 2.1663 45 1 0.4133 -2.1358 1.2535 46 1 1.5709 0.0489 4.4579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600940275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:07 Heat of formation + Delta-G solvation = -190.424068 kcal Electronic energy + Delta-G solvation = -28880.021374 eV Core-core repulsion = 24895.772911 eV Total energy + Delta-G solvation = -3984.248463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.70998 -39.44792 -38.14150 -38.10423 -37.08578 -36.82542 -34.18644 -33.61609 -32.77424 -28.50618 -28.27041 -27.68982 -27.24455 -26.47540 -24.00835 -22.90336 -21.31004 -20.54345 -19.31666 -19.01537 -18.89236 -17.92957 -17.44058 -17.06681 -16.94478 -16.70345 -16.53514 -15.85793 -15.59735 -15.28151 -14.97797 -14.63962 -14.47868 -14.40977 -14.35938 -13.95402 -13.79948 -13.54932 -13.11251 -13.02629 -12.93115 -12.87659 -12.76273 -12.63866 -12.48066 -12.43767 -12.35571 -12.13187 -12.11023 -12.01756 -11.92176 -11.58717 -11.55896 -11.49638 -11.30433 -11.16105 -10.61095 -10.40951 -9.85207 -8.02251 -6.21195 -0.60350 1.24538 1.44915 1.46760 1.55377 1.84077 2.17190 2.45095 2.96217 3.19736 3.27196 3.51741 3.63722 3.90790 4.01296 4.03364 4.17452 4.22185 4.31501 4.39392 4.60057 4.61031 4.69648 4.74240 4.75875 4.84739 4.86986 4.88462 4.91246 4.98221 5.00862 5.08289 5.13767 5.18211 5.29785 5.38823 5.39756 5.50750 5.65304 5.70775 5.76013 5.97607 6.12400 6.34819 6.84106 7.05697 7.47388 8.97487 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029819 B = 0.003103 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.772103 B = 9021.654246 C = 9175.514897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.083 4.083 3 H 0.102 0.898 4 C 0.115 3.885 5 N -1.000 6.000 6 S 2.606 3.394 7 O -0.990 6.990 8 O -0.987 6.987 9 C -0.586 4.586 10 C 0.068 3.932 11 C -0.159 4.159 12 C -0.159 4.159 13 C -0.517 4.517 14 H 0.065 0.935 15 C 0.016 3.984 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.110 3.890 22 C -0.122 4.122 23 C -0.071 4.071 24 H 0.146 0.854 25 C 0.488 3.512 26 O -0.544 6.544 27 O -0.510 6.510 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.056 0.944 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 9.290 19.620 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.103 4.103 3 H 0.120 0.880 4 C -0.009 4.009 5 N -0.839 5.839 6 S 2.705 3.295 7 O -0.980 6.980 8 O -0.978 6.978 9 C -0.718 4.718 10 C 0.066 3.934 11 C -0.217 4.217 12 C -0.217 4.217 13 C -0.556 4.556 14 H 0.083 0.917 15 C -0.183 4.183 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.014 4.014 22 C -0.161 4.161 23 C -0.090 4.090 24 H 0.164 0.836 25 C 0.332 3.668 26 O -0.434 6.434 27 O -0.323 6.323 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.075 0.925 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 5.976 9.234 19.072 22.016 hybrid contribution 0.368 -0.205 -0.633 0.761 sum 6.344 9.029 18.438 21.488 Atomic orbital electron populations 1.22062 0.96296 1.00982 1.02465 1.21298 0.95806 1.00132 0.93082 0.87993 1.21764 1.02063 0.78576 0.98546 1.57644 1.75577 1.19397 1.31311 1.04965 0.76654 0.73517 0.74335 1.93482 1.70953 1.58367 1.75176 1.93490 1.71996 1.54980 1.77288 1.30511 1.17023 1.11957 1.12289 1.17921 0.93725 0.91661 0.90058 1.22195 0.98839 1.00297 1.00348 1.22198 0.98895 0.98203 1.02391 1.21322 0.92690 1.35481 1.06135 0.91714 1.25700 0.97245 0.96281 0.99072 1.69958 1.16964 1.42252 1.25620 0.85608 0.79662 0.78765 0.77907 1.20331 1.21421 1.18995 1.21732 1.02661 0.94705 0.82325 1.21912 1.01177 0.93260 0.99794 1.21103 1.04540 0.95218 0.88127 0.83649 1.23658 0.75682 0.82026 0.85473 1.90683 1.37555 1.27570 1.87600 1.84502 1.72540 1.58369 1.16904 0.94266 0.91270 0.93191 0.89507 0.87192 0.84582 0.84474 0.95064 0.91249 0.94010 0.94094 0.91242 0.95048 0.92982 0.87175 0.89282 0.86923 0.92550 0.71304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 8.40 71.98 0.60 -3.48 16 2 C -0.08 -1.56 2.36 -10.72 -0.03 -1.58 16 3 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 4 C 0.12 2.24 5.83 86.36 0.50 2.75 16 5 N -1.00 -23.89 2.66 -513.06 -1.36 -25.26 16 6 S 2.61 91.68 4.49 -56.49 -0.25 91.43 16 7 O -0.99 -39.90 14.21 -127.65 -1.81 -41.71 16 8 O -0.99 -40.10 14.21 -127.65 -1.81 -41.91 16 9 C -0.59 -21.32 5.12 71.98 0.37 -20.95 16 10 C 0.07 3.26 0.52 -52.93 -0.03 3.23 16 11 C -0.16 -7.85 7.78 71.98 0.56 -7.29 16 12 C -0.16 -7.89 7.77 71.98 0.56 -7.33 16 13 C -0.52 -26.57 8.01 25.60 0.21 -26.37 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 15 C 0.02 0.86 5.15 84.65 0.44 1.29 16 16 N -0.91 -50.33 9.35 21.45 0.20 -50.13 16 17 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 C 0.11 1.97 6.43 86.36 0.56 2.53 16 22 C -0.12 -1.92 4.96 30.67 0.15 -1.76 16 23 C -0.07 -1.01 2.37 -11.51 -0.03 -1.04 16 24 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 25 C 0.49 7.93 7.34 71.24 0.52 8.45 16 26 O -0.54 -12.49 14.51 21.97 0.32 -12.17 16 27 O -0.51 -5.41 13.30 -51.45 -0.68 -6.10 16 28 H 0.04 1.09 5.97 -2.39 -0.01 1.08 16 29 H 0.07 1.80 5.65 -2.39 -0.01 1.78 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 2.00 6.86 -2.39 -0.02 1.98 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 34 H 0.14 4.36 8.14 -2.39 -0.02 4.35 16 35 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 36 H 0.07 3.77 6.07 -2.38 -0.01 3.75 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 40 H 0.03 1.49 5.47 -2.39 -0.01 1.48 16 41 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 42 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.09 1.85 6.86 -2.39 -0.02 1.84 16 44 H 0.11 1.22 8.08 -2.39 -0.02 1.20 16 45 H 0.06 1.15 6.33 -2.39 -0.02 1.14 16 46 H 0.43 1.34 9.10 -74.05 -0.67 0.66 16 Total: -1.00 -73.08 356.78 1.33 -71.75 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.33 Total: 21.95 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 4.39 Total: -51.55 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.16 Total: -75.38 kcal Atomic # 8 Polarization: -97.90 SS G_CDS: -3.99 Total: -101.89 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 91.68 SS G_CDS: -0.25 Total: 91.43 kcal Total: -73.08 1.33 -71.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600940275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.671 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds