Wall clock time and date at job start Tue Mar 31 2020 18:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51998 * 2 1 4 4 C 1.53190 * 109.50073 * 120.08644 * 2 1 3 5 5 N 1.46931 * 108.77385 * 174.58460 * 4 2 1 6 6 S 1.65594 * 120.62757 * 126.37063 * 5 4 2 7 7 O 1.42099 * 104.27925 * 206.06999 * 6 5 4 8 8 O 1.42101 * 104.28077 * 333.92804 * 6 5 4 9 9 C 1.81398 * 104.45184 * 89.99950 * 6 5 4 10 10 C 1.53000 * 109.47462 * 180.02562 * 9 6 5 11 11 C 1.53001 * 109.46728 * 300.00024 * 10 9 6 12 12 C 1.53001 * 109.47342 * 59.99598 * 10 9 6 13 13 C 1.50698 * 109.47383 * 180.02562 * 10 9 6 14 14 H 1.07999 * 120.00233 * 357.68794 * 13 10 9 15 15 C 1.37874 * 120.00187 * 177.69420 * 13 10 9 16 16 N 1.31515 * 119.99995 * 6.57859 * 15 13 10 17 17 Si 1.86803 * 120.00164 * 186.57776 * 15 13 10 18 18 H 1.48498 * 109.46848 * 84.99635 * 17 15 13 19 19 H 1.48498 * 109.46927 * 204.99310 * 17 15 13 20 20 H 1.48496 * 109.46900 * 324.99395 * 17 15 13 21 21 C 1.46919 * 118.73727 * 306.38941 * 5 4 2 22 22 C 1.53197 * 108.77777 * 53.61217 * 21 5 4 23 23 C 1.53039 * 109.30886 * 305.35932 * 22 21 5 24 24 H 1.08998 * 109.45210 * 301.35169 * 23 22 21 25 25 C 1.50700 * 109.45753 * 181.38400 * 23 22 21 26 26 O 1.20833 * 120.00006 * 240.21234 * 25 23 22 27 27 O 1.34228 * 120.00183 * 59.93199 * 25 23 22 28 28 H 1.09008 * 109.47284 * 180.08131 * 1 2 3 29 29 H 1.09001 * 109.46755 * 300.07272 * 1 2 3 30 30 H 1.08994 * 109.47679 * 60.07608 * 1 2 3 31 31 H 1.08995 * 109.58609 * 294.37487 * 4 2 1 32 32 H 1.09001 * 109.58511 * 54.79830 * 4 2 1 33 33 H 1.09005 * 109.47266 * 299.99940 * 9 6 5 34 34 H 1.09004 * 109.47314 * 59.99478 * 9 6 5 35 35 H 1.08993 * 109.47437 * 66.67031 * 11 10 9 36 36 H 1.09008 * 109.46779 * 186.67124 * 11 10 9 37 37 H 1.09000 * 109.47312 * 306.66788 * 11 10 9 38 38 H 1.09005 * 109.46707 * 60.00533 * 12 10 9 39 39 H 1.09001 * 109.47048 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47282 * 300.00828 * 12 10 9 41 41 H 0.97000 * 120.00201 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.58259 * 173.39512 * 21 5 4 43 43 H 1.09000 * 109.59020 * 293.67950 * 21 5 4 44 44 H 1.09001 * 109.49839 * 185.41048 * 22 21 5 45 45 H 1.08996 * 109.49514 * 65.30984 * 22 21 5 46 46 H 0.96694 * 116.99927 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7239 1.2495 5 7 3.5047 -0.8292 1.1693 6 16 4.4588 -0.2844 2.4082 7 8 5.6956 0.0331 1.7846 8 8 3.6762 0.7212 3.0373 9 6 4.6469 -1.7206 3.5002 10 6 5.5190 -1.3398 4.6982 11 6 6.8958 -0.8908 4.2045 12 6 4.8558 -0.1966 5.4690 13 6 5.6757 -2.5332 5.6050 14 1 5.1704 -3.4588 5.3717 15 6 6.4640 -2.4435 6.7326 16 7 6.9742 -1.2845 7.0877 17 14 6.8075 -3.9681 7.7559 18 1 7.9632 -4.7011 7.1795 19 1 7.1213 -3.5675 9.1509 20 1 5.6110 -4.8476 7.7507 21 6 4.1052 -1.4267 -0.0311 22 6 3.5707 -0.6949 -1.2663 23 6 2.0407 -0.7231 -1.2485 24 1 1.6968 -1.7573 -1.2354 25 6 1.5116 -0.0336 -2.4797 26 8 0.8034 0.9393 -2.3700 27 8 1.8316 -0.4968 -3.6982 28 1 -0.3634 -1.0277 0.0015 29 1 -0.3633 0.5150 0.8894 30 1 -0.3634 0.5126 -0.8906 31 1 1.7638 -0.1581 2.1388 32 1 1.6053 -1.7217 1.2978 33 1 3.6660 -2.0403 3.8523 34 1 5.1189 -2.5353 2.9509 35 1 6.7958 0.0399 3.6461 36 1 7.5544 -0.7332 5.0587 37 1 7.3180 -1.6594 3.5571 38 1 3.8749 -0.5165 5.8207 39 1 5.4774 0.0750 6.3222 40 1 4.7428 0.6665 4.8128 41 1 7.5292 -1.2214 7.8808 42 1 5.1896 -1.3245 0.0134 43 1 3.8396 -2.4824 -0.0858 44 1 3.9333 -1.1895 -2.1674 45 1 3.9158 0.3390 -1.2542 46 1 1.4681 -0.0217 -4.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600940276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:11 Heat of formation + Delta-G solvation = -170.714883 kcal Electronic energy + Delta-G solvation = -28631.106504 eV Core-core repulsion = 24647.712696 eV Total energy + Delta-G solvation = -3983.393808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94951 -38.49301 -36.65559 -36.44873 -36.28440 -35.31395 -33.50035 -32.26440 -31.68724 -27.37621 -26.74794 -25.74109 -25.58415 -25.24138 -22.48584 -22.30344 -20.19669 -19.47550 -18.39262 -18.32287 -17.55956 -16.90534 -16.11249 -15.98183 -15.75733 -15.35599 -14.82295 -14.75942 -14.37899 -14.13217 -13.97429 -13.72487 -13.07795 -13.04543 -12.80952 -12.53388 -12.44997 -12.31866 -12.21463 -12.00155 -11.70716 -11.51466 -11.39836 -11.18527 -11.13861 -11.04918 -10.97531 -10.95521 -10.75961 -10.65588 -10.39877 -10.32402 -10.31684 -10.10317 -9.68143 -9.59559 -8.99790 -8.66856 -8.39727 -6.05797 -4.17508 0.78836 1.91694 2.73021 3.05069 3.24860 3.32016 3.33358 4.23700 4.30766 4.36153 4.42230 4.60634 4.64751 4.87023 4.89452 5.07490 5.13546 5.18967 5.31409 5.36570 5.47240 5.49158 5.55412 5.63756 5.69700 5.70406 5.85529 5.87380 5.98273 6.11198 6.16003 6.36035 6.37481 6.63766 6.66901 6.76736 6.88983 7.02276 7.29096 7.46596 7.62055 7.65837 7.95683 8.08004 8.31660 8.80911 9.47793 10.95287 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.003035 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.082934 B = 9223.719480 C = 9285.494839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.088 4.088 3 H 0.086 0.914 4 C 0.123 3.877 5 N -1.012 6.012 6 S 2.591 3.409 7 O -0.961 6.961 8 O -0.960 6.960 9 C -0.581 4.581 10 C 0.081 3.919 11 C -0.160 4.160 12 C -0.164 4.164 13 C -0.503 4.503 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.119 3.881 22 C -0.123 4.123 23 C -0.073 4.073 24 H 0.112 0.888 25 C 0.483 3.517 26 O -0.508 6.508 27 O -0.517 6.517 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.026 0.974 36 H 0.094 0.906 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 -1.442 -17.931 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.108 4.108 3 H 0.104 0.896 4 C -0.003 4.003 5 N -0.847 5.847 6 S 2.690 3.310 7 O -0.952 6.952 8 O -0.950 6.950 9 C -0.715 4.715 10 C 0.079 3.921 11 C -0.218 4.218 12 C -0.222 4.222 13 C -0.543 4.543 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.007 4.007 22 C -0.162 4.162 23 C -0.093 4.093 24 H 0.130 0.870 25 C 0.326 3.674 26 O -0.396 6.396 27 O -0.328 6.328 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.116 0.884 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.733 -0.403 -17.363 19.909 hybrid contribution -0.243 -1.247 0.138 1.277 sum -9.976 -1.649 -17.224 19.973 Atomic orbital electron populations 1.22088 0.93766 1.02026 1.04107 1.21367 0.96657 1.00471 0.92289 0.89598 1.21504 0.79188 1.00765 0.98803 1.58089 1.15967 1.78564 1.32125 1.05789 0.73359 0.77764 0.74060 1.93531 1.43664 1.83299 1.74690 1.93533 1.70126 1.55322 1.76054 1.30582 1.09858 1.17528 1.13484 1.17937 0.89879 0.95952 0.88314 1.22207 1.00460 0.97716 1.01428 1.22310 1.00405 0.96289 1.03160 1.20935 1.29538 0.96538 1.07255 0.92290 1.24940 0.95695 0.96016 0.97065 1.69811 1.33747 1.23016 1.25429 0.86561 0.78720 0.83092 0.79334 1.20529 1.21186 1.20003 1.21404 0.99307 0.96650 0.83324 1.21891 0.91950 1.02975 0.99429 1.21124 0.97659 1.01226 0.89251 0.87042 1.23595 0.77036 0.82133 0.84675 1.90664 1.35542 1.26443 1.86971 1.84549 1.71524 1.59831 1.16932 0.92888 0.91891 0.89965 0.87990 0.91178 0.86432 0.86422 0.95530 0.88765 0.94599 0.94507 0.88417 0.95485 0.92689 0.88011 0.91048 0.89313 0.90626 0.73341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.86 37.16 0.33 -1.23 16 2 C -0.09 -0.94 2.06 -90.50 -0.19 -1.13 16 3 H 0.09 1.10 8.13 -51.93 -0.42 0.67 16 4 C 0.12 1.41 5.71 -3.71 -0.02 1.39 16 5 N -1.01 -13.46 3.22 -113.52 -0.37 -13.82 16 6 S 2.59 46.84 4.48 -107.50 -0.48 46.35 16 7 O -0.96 -19.46 14.35 -57.54 -0.83 -20.29 16 8 O -0.96 -19.70 14.21 -57.54 -0.82 -20.52 16 9 C -0.58 -11.03 5.11 37.16 0.19 -10.84 16 10 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 11 C -0.16 -3.89 7.58 37.16 0.28 -3.61 16 12 C -0.16 -4.01 7.80 37.16 0.29 -3.72 16 13 C -0.50 -13.06 8.01 -34.44 -0.28 -13.34 16 14 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 15 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 16 N -0.88 -23.90 9.39 55.43 0.52 -23.38 16 17 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 C 0.12 1.27 6.43 -3.71 -0.02 1.24 16 22 C -0.12 -1.15 5.30 -26.61 -0.14 -1.30 16 23 C -0.07 -0.67 2.14 -91.73 -0.20 -0.86 16 24 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 25 C 0.48 4.59 7.33 36.01 0.26 4.86 16 26 O -0.51 -6.21 14.34 -18.76 -0.27 -6.48 16 27 O -0.52 -3.59 13.30 -39.25 -0.52 -4.11 16 28 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.89 5.42 -51.93 -0.28 0.61 16 31 H 0.10 1.28 6.86 -51.93 -0.36 0.92 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 34 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 35 H 0.03 0.61 5.96 -51.93 -0.31 0.30 16 36 H 0.09 2.47 5.99 -51.92 -0.31 2.16 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 2.59 6.01 -51.93 -0.31 2.28 16 40 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 41 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 42 H 0.10 1.17 6.86 -51.92 -0.36 0.81 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.41 1.21 9.10 45.56 0.41 1.63 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -33.10 361.44 -8.40 -41.51 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.41 Total: 4.97 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 0.34 Total: -25.06 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.15 Total: -37.20 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.43 Total: -51.39 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.48 Total: 46.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.10 -8.40 -41.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600940276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.207 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds